RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MTURNQ8N3F0 131 aa11.44□□□□□ -0.58
USP53-208ENST00000514305 A0A1B0GW54 56 aa11.42□□□□□ -0.58
USP53-208ENST00000514305 VPS25Q9BRG1 176 aa11.42□□□□□ -0.58
USP53-208ENST00000514305 MUC2Q02817 5179 aa11.41□□□□□ -0.58
USP53-208ENST00000514305 LOC110117498A0A087WWA1 95 aa11.41□□□□□ -0.58
USP53-208ENST00000514305 A0A1W2PNM2 257 aa11.41□□□□□ -0.58
USP53-208ENST00000514305 ASB16-AS1Q495Z4 193 aa11.41□□□□□ -0.58
USP53-208ENST00000514305 OBSCN-AS1Q96MR7 158 aa11.41□□□□□ -0.58
USP53-208ENST00000514305 RETNLBQ9BQ08 111 aa11.4□□□□□ -0.58
USP53-208ENST00000514305 A0A087WSZ3 146 aa11.39□□□□□ -0.59
USP53-208ENST00000514305 C14orf132Q9NPU4 83 aa11.38□□□□□ -0.59
USP53-208ENST00000514305 IGLV7-46A0A075B6I9 117 aa11.37□□□□□ -0.59
USP53-208ENST00000514305 Q6ZQT0 140 aa11.37□□□□□ -0.59
USP53-208ENST00000514305 PRO0461Q9UI25 63 aa11.37□□□□□ -0.59
USP53-208ENST00000514305 C1orf195Q5TG92 126 aa11.33□□□□□ -0.6
USP53-208ENST00000514305 CDIP1Q9H305 208 aa11.33□□□□□ -0.6
USP53-208ENST00000514305 TPRXLQ17RH7 258 aa11.31□□□□□ -0.6
USP53-208ENST00000514305 A0A1B0GV90 55 aa11.27□□□□□ -0.61
USP53-208ENST00000514305 ETDBQ3ZM63 59 aa11.23□□□□□ -0.61
USP53-208ENST00000514305 NREPQ16612 68 aa11.21□□□□□ -0.61
USP53-208ENST00000514305 J3KT08 172 aa11.2□□□□□ -0.62
USP53-208ENST00000514305 IGKV4-1P06312 121 aa11.17□□□□□ -0.62
USP53-208ENST00000514305 LINC00472Q9H8W2 130 aa11.17□□□□□ -0.62
USP53-208ENST00000514305 KRTAP13-3Q3SY46 172 aa11.16□□□□□ -0.62
USP53-208ENST00000514305 SIGMAR1Q99720 223 aa11.16□□□□□ -0.62
USP53-208ENST00000514305 Q96NJ1 140 aa11.15□□□□□ -0.62
USP53-208ENST00000514305 MUC17Q685J3 4493 aa11.12□□□□□ -0.63
USP53-208ENST00000514305 NDUFB1O75438 58 aa11.12□□□□□ -0.63
USP53-208ENST00000514305 UBL5Q9BZL1 73 aa11.11□□□□□ -0.63
USP53-208ENST00000514305 DEFB116Q30KQ4 102 aa11.09□□□□□ -0.63
USP53-208ENST00000514305 C9orf92A6NGG3 77 aa11.08□□□□□ -0.64
USP53-208ENST00000514305 FAT4Q6V0I7 4981 aa11.08□□□□□ -0.64
USP53-208ENST00000514305 ACYP1P07311 99 aa11.07□□□□□ -0.64
USP53-208ENST00000514305 C8orf87E5RJ46 101 aa11.03□□□□□ -0.64
USP53-208ENST00000514305 BPY2O14599 106 aa11.03□□□□□ -0.64
USP53-208ENST00000514305 LINC00313P59037 77 aa11.03□□□□□ -0.64
USP53-208ENST00000514305 Q6ZVQ6 151 aa11.03□□□□□ -0.64
USP53-208ENST00000514305 A8MWP4 228 aa11.01□□□□□ -0.65
USP53-208ENST00000514305 J3QR89 54 aa11.01□□□□□ -0.65
USP53-208ENST00000514305 LINC00846Q9NV44 126 aa11.01□□□□□ -0.65
USP53-208ENST00000514305 IGHV6-1A0A0B4J1U7 121 aa11□□□□□ -0.65
USP53-208ENST00000514305 FAM240AA0A1B0GVK7 77 aa11□□□□□ -0.65
USP53-208ENST00000514305 A0A1B0GVX0 72 aa11□□□□□ -0.65
USP53-208ENST00000514305 SEC61BP60468 96 aaKnown RBP10.99□□□□□ -0.65
USP53-208ENST00000514305 DSCR10P59022 87 aa10.95□□□□□ -0.66
USP53-208ENST00000514305 KRTAP3-1Q9BYR8 98 aa10.94□□□□□ -0.66
USP53-208ENST00000514305 PRR15Q8IV56 129 aa10.93□□□□□ -0.66
USP53-208ENST00000514305 IGKV3D-7A0A0C4DH55 119 aa10.91□□□□□ -0.66
USP53-208ENST00000514305 RPL37P61927 97 aaKnown RBP10.88□□□□□ -0.67
USP53-208ENST00000514305 CXCL6P80162 114 aa10.88□□□□□ -0.67
USP53-208ENST00000514305 Q75L30 129 aa10.88□□□□□ -0.67
USP53-208ENST00000514305 C8orf17Q9NRJ1 99 aa10.87□□□□□ -0.67
USP53-208ENST00000514305 K7EQZ3 153 aa10.85□□□□□ -0.67
USP53-208ENST00000514305 ATP11AUNQ6ZP68 121 aa10.85□□□□□ -0.67
USP53-208ENST00000514305 C20orf166-AS1Q96NR2 134 aa10.85□□□□□ -0.67
USP53-208ENST00000514305 KRTAP4-1Q9BYQ7 146 aa10.85□□□□□ -0.67
USP53-208ENST00000514305 ATP5EP2Q5VTU8 51 aa10.83□□□□□ -0.68
USP53-208ENST00000514305 A8MUU9 505 aa10.82□□□□□ -0.68
USP53-208ENST00000514305 NOTCH2NLQ7Z3S9 236 aa10.82□□□□□ -0.68
USP53-208ENST00000514305 KRTAP16-1A8MUX0 517 aa10.79□□□□□ -0.68
USP53-208ENST00000514305 K7ERU9 68 aa10.79□□□□□ -0.68
USP53-208ENST00000514305 hDV103S1A0JD37 113 aa10.78□□□□□ -0.68
USP53-208ENST00000514305 LINC00643Q86TS7 51 aa10.78□□□□□ -0.68
USP53-208ENST00000514305 TMEM254Q8TBM7 123 aa10.78□□□□□ -0.68
USP53-208ENST00000514305 PCOTHQ58A44 107 aa10.77□□□□□ -0.69
USP53-208ENST00000514305 MMP24-AS1A0A0U1RRL7 71 aa10.76□□□□□ -0.69
USP53-208ENST00000514305 Q8N9L7 120 aa10.75□□□□□ -0.69
USP53-208ENST00000514305 MRPL34Q9BQ48 92 aaKnown RBP10.75□□□□□ -0.69
USP53-208ENST00000514305 CASC2Q6XLA1 102 aa10.73□□□□□ -0.69
USP53-208ENST00000514305 Q8N9P0 234 aaPredicted RBP10.73□□□□□ -0.69
USP53-208ENST00000514305 HCG22E2RYF7 251 aa10.7□□□□□ -0.7
USP53-208ENST00000514305 NDUFS5O43920 106 aa10.68□□□□□ -0.7
USP53-208ENST00000514305 WFDC13Q8IUB5 93 aa10.68□□□□□ -0.7
USP53-208ENST00000514305 HIST1H4AP62805 103 aaKnown RBP10.66□□□□□ -0.7
USP53-208ENST00000514305 ZCCHC13Q8WW36 166 aaKnown RBP10.62□□□□□ -0.71
USP53-208ENST00000514305 TP53AIP1Q9HCN2 124 aa10.56□□□□□ -0.72
USP53-208ENST00000514305 KRTAP19-2Q3LHN2 52 aa10.55□□□□□ -0.72
USP53-208ENST00000514305 MT1HP80294 61 aa10.52□□□□□ -0.73
USP53-208ENST00000514305 IMUPQ9GZP8 106 aa10.5□□□□□ -0.73
USP53-208ENST00000514305 FSIP2Q5CZC0 6907 aa10.45□□□□□ -0.74
USP53-208ENST00000514305 A0A087WVE0 104 aa10.45□□□□□ -0.74
USP53-208ENST00000514305 COX6B2Q6YFQ2 88 aa10.43□□□□□ -0.74
USP53-208ENST00000514305 CRCT1Q9UGL9 99 aa10.43□□□□□ -0.74
USP53-208ENST00000514305 M0R2T5 61 aa10.41□□□□□ -0.74
USP53-208ENST00000514305 SPINK7P58062 85 aa10.41□□□□□ -0.74
USP53-208ENST00000514305 KRTAP5-3Q6L8H2 238 aa10.4□□□□□ -0.74
USP53-208ENST00000514305 UQCRQO14949 82 aa10.38□□□□□ -0.75
USP53-208ENST00000514305 MT-ATP8P03928 68 aa10.38□□□□□ -0.75
USP53-208ENST00000514305 SCGB1A1P11684 91 aa10.38□□□□□ -0.75
USP53-208ENST00000514305 Q5W150 140 aa10.37□□□□□ -0.75
USP53-208ENST00000514305 RBM12B-AS1Q9P1G2 102 aa10.37□□□□□ -0.75
USP53-208ENST00000514305 C7orf65Q6ZTY9 151 aa10.36□□□□□ -0.75
USP53-208ENST00000514305 KRTAP10-6P60371 365 aaPredicted RBP10.35□□□□□ -0.75
USP53-208ENST00000514305 IGKV2D-30A0A075B6S6 120 aa10.33□□□□□ -0.76
USP53-208ENST00000514305 IGKV2-30P06310 120 aa10.33□□□□□ -0.76
USP53-208ENST00000514305 TRAV22A0A0B4J277 110 aa10.32□□□□□ -0.76
USP53-208ENST00000514305 ATOX1O00244 68 aa10.3□□□□□ -0.76
USP53-208ENST00000514305 FAM236DA0A1B0GTK5 79 aa10.28□□□□□ -0.76
USP53-208ENST00000514305 FAM236CP0DP71 79 aa10.28□□□□□ -0.76
USP53-208ENST00000514305 HRES1P13985 223 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms