RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CSAG1Q6PB30 78 aa6.91□□□□□ -1.3
TCOF1-211ENST00000513346 C9orf92A6NGG3 77 aa6.91□□□□□ -1.3
TCOF1-211ENST00000513346 BSNQ9UPA5 3926 aa6.9□□□□□ -1.3
TCOF1-211ENST00000513346 KRTAP4-16G5E9R7 235 aaPredicted RBP6.9□□□□□ -1.31
TCOF1-211ENST00000513346 CELSR1Q9NYQ6 3014 aa6.89□□□□□ -1.31
TCOF1-211ENST00000513346 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.89□□□□□ -1.31
TCOF1-211ENST00000513346 NBPF19A0A087WUL8 3843 aa6.89□□□□□ -1.31
TCOF1-211ENST00000513346 ASB16-AS1Q495Z4 193 aa6.88□□□□□ -1.31
TCOF1-211ENST00000513346 CRIPTQ9P021 101 aa6.88□□□□□ -1.31
TCOF1-211ENST00000513346 TENM3Q9P273 2699 aa6.87□□□□□ -1.31
TCOF1-211ENST00000513346 A8MU10 97 aa6.86□□□□□ -1.31
TCOF1-211ENST00000513346 Q8N1X5 172 aa6.86□□□□□ -1.31
TCOF1-211ENST00000513346 COX6B2Q6YFQ2 88 aa6.85□□□□□ -1.31
TCOF1-211ENST00000513346 Q6ZR54 194 aa6.85□□□□□ -1.31
TCOF1-211ENST00000513346 TENM1Q9UKZ4 2725 aa6.84□□□□□ -1.31
TCOF1-211ENST00000513346 FLG2Q5D862 2391 aaPredicted RBP6.83□□□□□ -1.32
TCOF1-211ENST00000513346 PDZD2O15018 2839 aa6.82□□□□□ -1.32
TCOF1-211ENST00000513346 A0A1B0GU33 70 aa6.81□□□□□ -1.32
TCOF1-211ENST00000513346 TGP01266 2768 aa6.81□□□□□ -1.32
TCOF1-211ENST00000513346 CSMD2Q7Z408 3487 aa6.81□□□□□ -1.32
TCOF1-211ENST00000513346 KRTAP1-5Q9BYS1 174 aa6.81□□□□□ -1.32
TCOF1-211ENST00000513346 Q5W150 140 aa6.8□□□□□ -1.32
TCOF1-211ENST00000513346 DMAC1Q96GE9 116 aa6.79□□□□□ -1.32
TCOF1-211ENST00000513346 VWFP04275 2813 aa6.78□□□□□ -1.32
TCOF1-211ENST00000513346 PLAC8Q9NZF1 115 aa6.78□□□□□ -1.32
TCOF1-211ENST00000513346 TENM2Q9NT68 2774 aa6.78□□□□□ -1.32
TCOF1-211ENST00000513346 SPATA8Q6RVD6 105 aa6.76□□□□□ -1.33
TCOF1-211ENST00000513346 VPS13CQ709C8 3753 aa6.72□□□□□ -1.33
TCOF1-211ENST00000513346 A0A0D9SG42 100 aa6.72□□□□□ -1.33
TCOF1-211ENST00000513346 CUBNO60494 3623 aa6.72□□□□□ -1.33
TCOF1-211ENST00000513346 ADM2Q7Z4H4 148 aa6.69□□□□□ -1.34
TCOF1-211ENST00000513346 SRRM2Q9UQ35 2752 aaKnown RBP6.67□□□□□ -1.34
TCOF1-211ENST00000513346 LINC00483Q53H64 154 aa6.65□□□□□ -1.34
TCOF1-211ENST00000513346 Q6ZSA8 131 aa6.65□□□□□ -1.35
TCOF1-211ENST00000513346 KRTAP7-1Q8IUC3 87 aa6.65□□□□□ -1.35
TCOF1-211ENST00000513346 KRTAP10-1P60331 282 aa6.63□□□□□ -1.35
TCOF1-211ENST00000513346 KRTAP10-2P60368 255 aa6.63□□□□□ -1.35
TCOF1-211ENST00000513346 A0A087X002 238 aa6.62□□□□□ -1.35
TCOF1-211ENST00000513346 NOTCH2NLQ7Z3S9 236 aa6.62□□□□□ -1.35
TCOF1-211ENST00000513346 PANO1I0J062 215 aa6.61□□□□□ -1.35
TCOF1-211ENST00000513346 Q5VSD8 79 aa6.61□□□□□ -1.35
TCOF1-211ENST00000513346 ROMO1P60602 79 aa6.57□□□□□ -1.36
TCOF1-211ENST00000513346 KRTAP25-1Q3LHN0 102 aa6.56□□□□□ -1.36
TCOF1-211ENST00000513346 H1FX-AS1Q4G0G2 97 aa6.56□□□□□ -1.36
TCOF1-211ENST00000513346 KRTAP11-1Q8IUC1 163 aa6.56□□□□□ -1.36
TCOF1-211ENST00000513346 RPL37P61927 97 aaKnown RBP6.53□□□□□ -1.36
TCOF1-211ENST00000513346 LUZP6Q538Z0 58 aa6.53□□□□□ -1.36
TCOF1-211ENST00000513346 Q6ZRN7 208 aaPredicted RBP6.46□□□□□ -1.37
TCOF1-211ENST00000513346 M0R2T5 61 aa6.46□□□□□ -1.38
TCOF1-211ENST00000513346 KRTAP13-1Q8IUC0 172 aa6.45□□□□□ -1.38
TCOF1-211ENST00000513346 SEC61BP60468 96 aaKnown RBP6.43□□□□□ -1.38
TCOF1-211ENST00000513346 KRTAP16-1A8MUX0 517 aa6.4□□□□□ -1.39
TCOF1-211ENST00000513346 A0A0A0MQY5 61 aa6.39□□□□□ -1.39
TCOF1-211ENST00000513346 S4R3F8 94 aa6.38□□□□□ -1.39
TCOF1-211ENST00000513346 CAMK2N1Q7Z7J9 78 aa6.36□□□□□ -1.39
TCOF1-211ENST00000513346 A8MUU9 505 aa6.34□□□□□ -1.39
TCOF1-211ENST00000513346 TRRAPQ9Y4A5 3859 aa6.33□□□□□ -1.4
TCOF1-211ENST00000513346 NDUFAF8A1L188 74 aa6.32□□□□□ -1.4
TCOF1-211ENST00000513346 FBN3Q75N90 2809 aa6.32□□□□□ -1.4
TCOF1-211ENST00000513346 ZNF469Q96JG9 3925 aaPredicted RBP6.29□□□□□ -1.4
TCOF1-211ENST00000513346 R4GN34 69 aa6.27□□□□□ -1.41
TCOF1-211ENST00000513346 COL7A1Q02388 2944 aa6.26□□□□□ -1.41
TCOF1-211ENST00000513346 AKAP9Q99996 3911 aa6.26□□□□□ -1.41
TCOF1-211ENST00000513346 KRTAP13-2Q52LG2 175 aa6.24□□□□□ -1.41
TCOF1-211ENST00000513346 RPS29P62273 56 aaKnown RBP6.23□□□□□ -1.41
TCOF1-211ENST00000513346 H0YAA0 97 aa6.2□□□□□ -1.42
TCOF1-211ENST00000513346 C20orf166-AS1Q96NR2 134 aa6.15□□□□□ -1.43
TCOF1-211ENST00000513346 M0QZ58 72 aa6.14□□□□□ -1.43
TCOF1-211ENST00000513346 KRTAP13-3Q3SY46 172 aa6.13□□□□□ -1.43
TCOF1-211ENST00000513346 ANK3Q12955 4377 aaKnown RBP6.12□□□□□ -1.43
TCOF1-211ENST00000513346 C10orf95Q9H7T3 257 aa6.06□□□□□ -1.44
TCOF1-211ENST00000513346 KRTAP1-4P0C5Y4 121 aa6.02□□□□□ -1.45
TCOF1-211ENST00000513346 MEGF8Q7Z7M0 2845 aa6.01□□□□□ -1.45
TCOF1-211ENST00000513346 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
TCOF1-211ENST00000513346 DNHD1Q96M86 4753 aa5.94□□□□□ -1.46
TCOF1-211ENST00000513346 P0C880 135 aa5.94□□□□□ -1.46
TCOF1-211ENST00000513346 A0A1B0GVY2 172 aa5.92□□□□□ -1.46
TCOF1-211ENST00000513346 XP32Q5T750 250 aa5.87□□□□□ -1.47
TCOF1-211ENST00000513346 TPRXLQ17RH7 258 aa5.84□□□□□ -1.48
TCOF1-211ENST00000513346 PP632Q6XCG6 107 aa5.81□□□□□ -1.48
TCOF1-211ENST00000513346 KRTAP10-8P60410 259 aa5.74□□□□□ -1.49
TCOF1-211ENST00000513346 TNP1P09430 55 aa5.73□□□□□ -1.49
TCOF1-211ENST00000513346 KRTAP3-1Q9BYR8 98 aa5.7□□□□□ -1.5
TCOF1-211ENST00000513346 CSMD3Q7Z407 3707 aa5.69□□□□□ -1.5
TCOF1-211ENST00000513346 KRTAP12-2P59991 146 aa5.69□□□□□ -1.5
TCOF1-211ENST00000513346 ANK2Q01484 3957 aa5.69□□□□□ -1.5
TCOF1-211ENST00000513346 KRTAP12-1P59990 96 aa5.62□□□□□ -1.51
TCOF1-211ENST00000513346 KRTAP4-5Q9BYR2 181 aa5.6□□□□□ -1.51
TCOF1-211ENST00000513346 KRTAP15-1Q3LI76 137 aa5.59□□□□□ -1.51
TCOF1-211ENST00000513346 KRTAP10-6P60371 365 aaPredicted RBP5.58□□□□□ -1.52
TCOF1-211ENST00000513346 KRTAP13-4Q3LI77 160 aa5.58□□□□□ -1.52
TCOF1-211ENST00000513346 HUWE1Q7Z6Z7 4374 aaKnown RBP5.56□□□□□ -1.52
TCOF1-211ENST00000513346 KRTAP10-10P60014 251 aa5.56□□□□□ -1.52
TCOF1-211ENST00000513346 LYSTQ99698 3801 aa5.53□□□□□ -1.52
TCOF1-211ENST00000513346 CMYA5Q8N3K9 4069 aa5.49□□□□□ -1.53
TCOF1-211ENST00000513346 DNAH9Q9NYC9 4486 aa5.46□□□□□ -1.53
TCOF1-211ENST00000513346 DNAH10Q8IVF4 4471 aa5.45□□□□□ -1.54
TCOF1-211ENST00000513346 PRKDCP78527 4128 aaKnown RBP5.42□□□□□ -1.54
TCOF1-211ENST00000513346 KRTAP3-2Q9BYR7 98 aa5.41□□□□□ -1.54
TCOF1-211ENST00000513346 PRO2289Q9P1D8 64 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms