RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 RPL37P61927 97 aaKnown RBP6.74□□□□□ -1.33
CPNE4-209ENST00000512055 KRTAP1-5Q9BYS1 174 aa6.72□□□□□ -1.33
CPNE4-209ENST00000512055 PSORS1C2Q9UIG4 136 aa6.72□□□□□ -1.33
CPNE4-209ENST00000512055 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.71□□□□□ -1.33
CPNE4-209ENST00000512055 SPRR4Q96PI1 79 aa6.71□□□□□ -1.34
CPNE4-209ENST00000512055 STAB2Q8WWQ8 2551 aa6.7□□□□□ -1.34
CPNE4-209ENST00000512055 BSNQ9UPA5 3926 aa6.69□□□□□ -1.34
CPNE4-209ENST00000512055 DMBT1Q9UGM3 2413 aaPredicted RBP6.69□□□□□ -1.34
CPNE4-209ENST00000512055 PLAC4Q8WY50 150 aa6.69□□□□□ -1.34
CPNE4-209ENST00000512055 ASB16-AS1Q495Z4 193 aa6.68□□□□□ -1.34
CPNE4-209ENST00000512055 TENM4Q6N022 2769 aa6.68□□□□□ -1.34
CPNE4-209ENST00000512055 CUBNO60494 3623 aa6.68□□□□□ -1.34
CPNE4-209ENST00000512055 R4GN34 69 aa6.67□□□□□ -1.34
CPNE4-209ENST00000512055 SEC61BP60468 96 aaKnown RBP6.66□□□□□ -1.34
CPNE4-209ENST00000512055 TNP2Q05952 138 aa6.65□□□□□ -1.34
CPNE4-209ENST00000512055 SPRR1AP35321 89 aa6.64□□□□□ -1.35
CPNE4-209ENST00000512055 Q6ZSA8 131 aa6.64□□□□□ -1.35
CPNE4-209ENST00000512055 MMP24-AS1A0A0U1RRL7 71 aa6.63□□□□□ -1.35
CPNE4-209ENST00000512055 KRTAP25-1Q3LHN0 102 aa6.63□□□□□ -1.35
CPNE4-209ENST00000512055 S4R3F8 94 aa6.61□□□□□ -1.35
CPNE4-209ENST00000512055 ADM2Q7Z4H4 148 aa6.61□□□□□ -1.35
CPNE4-209ENST00000512055 CSMD2Q7Z408 3487 aa6.6□□□□□ -1.35
CPNE4-209ENST00000512055 C20orf166-AS1Q96NR2 134 aa6.59□□□□□ -1.35
CPNE4-209ENST00000512055 TENM1Q9UKZ4 2725 aa6.59□□□□□ -1.35
CPNE4-209ENST00000512055 SPATA8Q6RVD6 105 aa6.59□□□□□ -1.35
CPNE4-209ENST00000512055 A6NN06 94 aa6.59□□□□□ -1.35
CPNE4-209ENST00000512055 NBPF19A0A087WUL8 3843 aa6.58□□□□□ -1.36
CPNE4-209ENST00000512055 Q5W150 140 aa6.58□□□□□ -1.36
CPNE4-209ENST00000512055 PDZD2O15018 2839 aa6.57□□□□□ -1.36
CPNE4-209ENST00000512055 ZCCHC13Q8WW36 166 aaKnown RBP6.56□□□□□ -1.36
CPNE4-209ENST00000512055 VWFP04275 2813 aa6.54□□□□□ -1.36
CPNE4-209ENST00000512055 PANO1I0J062 215 aa6.53□□□□□ -1.36
CPNE4-209ENST00000512055 M0QZ58 72 aa6.53□□□□□ -1.36
CPNE4-209ENST00000512055 TENM3Q9P273 2699 aa6.53□□□□□ -1.36
CPNE4-209ENST00000512055 KRTAP4-16G5E9R7 235 aaPredicted RBP6.52□□□□□ -1.37
CPNE4-209ENST00000512055 OTOGQ6ZRI0 2925 aa6.52□□□□□ -1.37
CPNE4-209ENST00000512055 PLAC8Q9NZF1 115 aa6.5□□□□□ -1.37
CPNE4-209ENST00000512055 FBN1P35555 2871 aaKnown RBP6.49□□□□□ -1.37
CPNE4-209ENST00000512055 Q5VSD8 79 aa6.48□□□□□ -1.37
CPNE4-209ENST00000512055 VPS13CQ709C8 3753 aa6.47□□□□□ -1.37
CPNE4-209ENST00000512055 KRTAP7-1Q8IUC3 87 aa6.47□□□□□ -1.37
CPNE4-209ENST00000512055 SPRR1BP22528 89 aa6.47□□□□□ -1.37
CPNE4-209ENST00000512055 KRTAP11-1Q8IUC1 163 aa6.45□□□□□ -1.38
CPNE4-209ENST00000512055 ZFHX3Q15911 3703 aa6.45□□□□□ -1.38
CPNE4-209ENST00000512055 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
CPNE4-209ENST00000512055 KRTAP10-2P60368 255 aa6.43□□□□□ -1.38
CPNE4-209ENST00000512055 A8MU10 97 aa6.43□□□□□ -1.38
CPNE4-209ENST00000512055 Q6ZR54 194 aa6.4□□□□□ -1.38
CPNE4-209ENST00000512055 KRTAP10-1P60331 282 aa6.39□□□□□ -1.39
CPNE4-209ENST00000512055 Q6ZRN7 208 aaPredicted RBP6.38□□□□□ -1.39
CPNE4-209ENST00000512055 C10orf95Q9H7T3 257 aa6.38□□□□□ -1.39
CPNE4-209ENST00000512055 A8MUU9 505 aa6.36□□□□□ -1.39
CPNE4-209ENST00000512055 PKD1L1Q8TDX9 2849 aa6.29□□□□□ -1.4
CPNE4-209ENST00000512055 A0A087X002 238 aa6.28□□□□□ -1.4
CPNE4-209ENST00000512055 KRTAP29-1A8MX34 341 aaPredicted RBP6.27□□□□□ -1.41
CPNE4-209ENST00000512055 TRRAPQ9Y4A5 3859 aa6.25□□□□□ -1.41
CPNE4-209ENST00000512055 NOTCH2NLQ7Z3S9 236 aa6.25□□□□□ -1.41
CPNE4-209ENST00000512055 ANK3Q12955 4377 aaKnown RBP6.24□□□□□ -1.41
CPNE4-209ENST00000512055 KRTAP13-1Q8IUC0 172 aa6.23□□□□□ -1.41
CPNE4-209ENST00000512055 LCE6AA0A183 80 aa6.22□□□□□ -1.41
CPNE4-209ENST00000512055 TGP01266 2768 aa6.21□□□□□ -1.42
CPNE4-209ENST00000512055 TENM2Q9NT68 2774 aa6.21□□□□□ -1.42
CPNE4-209ENST00000512055 ZNF469Q96JG9 3925 aaPredicted RBP6.2□□□□□ -1.42
CPNE4-209ENST00000512055 KRTAP13-2Q52LG2 175 aa6.13□□□□□ -1.43
CPNE4-209ENST00000512055 TNP1P09430 55 aa6.11□□□□□ -1.43
CPNE4-209ENST00000512055 PP632Q6XCG6 107 aa6.11□□□□□ -1.43
CPNE4-209ENST00000512055 P0C880 135 aa6.05□□□□□ -1.44
CPNE4-209ENST00000512055 KRTAP10-8P60410 259 aa5.98□□□□□ -1.45
CPNE4-209ENST00000512055 KRTAP21-3Q3LHN1 58 aa5.96□□□□□ -1.45
CPNE4-209ENST00000512055 KRTAP1-4P0C5Y4 121 aa5.94□□□□□ -1.46
CPNE4-209ENST00000512055 SRRM2Q9UQ35 2752 aaKnown RBP5.93□□□□□ -1.46
CPNE4-209ENST00000512055 FBN3Q75N90 2809 aa5.92□□□□□ -1.46
CPNE4-209ENST00000512055 RPS29P62273 56 aaKnown RBP5.91□□□□□ -1.46
CPNE4-209ENST00000512055 AKAP9Q99996 3911 aa5.9□□□□□ -1.46
CPNE4-209ENST00000512055 MEGF8Q7Z7M0 2845 aa5.85□□□□□ -1.47
CPNE4-209ENST00000512055 H0YAA0 97 aa5.82□□□□□ -1.48
CPNE4-209ENST00000512055 CSMD3Q7Z407 3707 aa5.76□□□□□ -1.49
CPNE4-209ENST00000512055 COL7A1Q02388 2944 aa5.76□□□□□ -1.49
CPNE4-209ENST00000512055 HUWE1Q7Z6Z7 4374 aaKnown RBP5.75□□□□□ -1.49
CPNE4-209ENST00000512055 A0A1B0GVY2 172 aa5.66□□□□□ -1.5
CPNE4-209ENST00000512055 KRTAP13-3Q3SY46 172 aa5.65□□□□□ -1.5
CPNE4-209ENST00000512055 XP32Q5T750 250 aa5.64□□□□□ -1.51
CPNE4-209ENST00000512055 DNAH9Q9NYC9 4486 aa5.56□□□□□ -1.52
CPNE4-209ENST00000512055 KRTAP10-10P60014 251 aa5.53□□□□□ -1.52
CPNE4-209ENST00000512055 KRTAP12-2P59991 146 aa5.49□□□□□ -1.53
CPNE4-209ENST00000512055 PLECQ15149 4684 aaKnown RBP5.47□□□□□ -1.53
CPNE4-209ENST00000512055 ANK2Q01484 3957 aa5.47□□□□□ -1.53
CPNE4-209ENST00000512055 TPRXLQ17RH7 258 aa5.47□□□□□ -1.53
CPNE4-209ENST00000512055 DNAH10Q8IVF4 4471 aa5.46□□□□□ -1.53
CPNE4-209ENST00000512055 PRO2289Q9P1D8 64 aa5.46□□□□□ -1.54
CPNE4-209ENST00000512055 DNAH1Q9P2D7 4330 aa5.4□□□□□ -1.55
CPNE4-209ENST00000512055 INE1O15225 51 aa5.39□□□□□ -1.55
CPNE4-209ENST00000512055 KRTAP3-1Q9BYR8 98 aa5.39□□□□□ -1.55
CPNE4-209ENST00000512055 DNHD1Q96M86 4753 aa5.38□□□□□ -1.55
CPNE4-209ENST00000512055 DNAH11Q96DT5 4516 aa5.34□□□□□ -1.55
CPNE4-209ENST00000512055 STARD9Q9P2P6 4700 aa5.33□□□□□ -1.56
CPNE4-209ENST00000512055 KRTAP13-4Q3LI77 160 aa5.32□□□□□ -1.56
CPNE4-209ENST00000512055 KRTAP10-4P60372 401 aaPredicted RBP5.31□□□□□ -1.56
CPNE4-209ENST00000512055 PRKDCP78527 4128 aaKnown RBP5.31□□□□□ -1.56
CPNE4-209ENST00000512055 VPS13DQ5THJ4 4388 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms