RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CCKP06307 115 aa5.1□□□□□ -1.59
NUP54-207ENST00000508583 PCP4L1A6NKN8 68 aa5.09□□□□□ -1.59
NUP54-207ENST00000508583 H3BT86 120 aa5.09□□□□□ -1.59
NUP54-207ENST00000508583 A0A1B0GW54 56 aa5.08□□□□□ -1.6
NUP54-207ENST00000508583 A0A1W2PNM2 257 aa5.08□□□□□ -1.6
NUP54-207ENST00000508583 SPCS1Q9Y6A9 102 aa5.08□□□□□ -1.6
NUP54-207ENST00000508583 VPS25Q9BRG1 176 aa5.07□□□□□ -1.6
NUP54-207ENST00000508583 LOC110117498A0A087WWA1 95 aa5.06□□□□□ -1.6
NUP54-207ENST00000508583 SEC61BP60468 96 aaKnown RBP5.05□□□□□ -1.6
NUP54-207ENST00000508583 GTF2H5Q6ZYL4 71 aa5.05□□□□□ -1.6
NUP54-207ENST00000508583 RNF213Q63HN8 5207 aa5.05□□□□□ -1.6
NUP54-207ENST00000508583 KRTAP9-3Q9BYQ3 159 aa5.04□□□□□ -1.6
NUP54-207ENST00000508583 C9orf92A6NGG3 77 aa5.03□□□□□ -1.6
NUP54-207ENST00000508583 K7EP34 96 aa5.03□□□□□ -1.6
NUP54-207ENST00000508583 Q6ZQT0 140 aa5.03□□□□□ -1.6
NUP54-207ENST00000508583 OBSCN-AS1Q96MR7 158 aa5.03□□□□□ -1.6
NUP54-207ENST00000508583 SIGMAR1Q99720 223 aa5.02□□□□□ -1.61
NUP54-207ENST00000508583 C14orf132Q9NPU4 83 aa5.02□□□□□ -1.61
NUP54-207ENST00000508583 A0A0U1RQV1 116 aa5.01□□□□□ -1.61
NUP54-207ENST00000508583 J3KT08 172 aa5.01□□□□□ -1.61
NUP54-207ENST00000508583 IGKV4-1P06312 121 aa5□□□□□ -1.61
NUP54-207ENST00000508583 MTURNQ8N3F0 131 aa5□□□□□ -1.61
NUP54-207ENST00000508583 Q96NJ1 140 aa5□□□□□ -1.61
NUP54-207ENST00000508583 LINC00472Q9H8W2 130 aa4.99□□□□□ -1.61
NUP54-207ENST00000508583 F8W1H4 67 aa4.97□□□□□ -1.61
NUP54-207ENST00000508583 NDUFB1O75438 58 aa4.97□□□□□ -1.61
NUP54-207ENST00000508583 LINC00313P59037 77 aa4.96□□□□□ -1.62
NUP54-207ENST00000508583 RPL37P61927 97 aaKnown RBP4.96□□□□□ -1.62
NUP54-207ENST00000508583 NREPQ16612 68 aa4.96□□□□□ -1.62
NUP54-207ENST00000508583 MUC2Q02817 5179 aa4.95□□□□□ -1.62
NUP54-207ENST00000508583 C8orf87E5RJ46 101 aa4.95□□□□□ -1.62
NUP54-207ENST00000508583 Q75L30 129 aa4.95□□□□□ -1.62
NUP54-207ENST00000508583 PRO0461Q9UI25 63 aa4.95□□□□□ -1.62
NUP54-207ENST00000508583 MUC17Q685J3 4493 aa4.93□□□□□ -1.62
NUP54-207ENST00000508583 IGHV6-1A0A0B4J1U7 121 aa4.93□□□□□ -1.62
NUP54-207ENST00000508583 A0A1B0GVX0 72 aa4.93□□□□□ -1.62
NUP54-207ENST00000508583 DEFB116Q30KQ4 102 aa4.93□□□□□ -1.62
NUP54-207ENST00000508583 ATP11AUNQ6ZP68 121 aa4.93□□□□□ -1.62
NUP54-207ENST00000508583 PCOTHQ58A44 107 aa4.92□□□□□ -1.62
NUP54-207ENST00000508583 A8MWP4 228 aa4.91□□□□□ -1.62
NUP54-207ENST00000508583 DSCR10P59022 87 aa4.91□□□□□ -1.62
NUP54-207ENST00000508583 C20orf166-AS1Q96NR2 134 aa4.91□□□□□ -1.62
NUP54-207ENST00000508583 UBL5Q9BZL1 73 aa4.9□□□□□ -1.63
NUP54-207ENST00000508583 A8MUU9 505 aa4.89□□□□□ -1.63
NUP54-207ENST00000508583 BPY2O14599 106 aa4.89□□□□□ -1.63
NUP54-207ENST00000508583 ETDBQ3ZM63 59 aa4.88□□□□□ -1.63
NUP54-207ENST00000508583 PRR15Q8IV56 129 aa4.87□□□□□ -1.63
NUP54-207ENST00000508583 Q6ZVQ6 151 aa4.86□□□□□ -1.63
NUP54-207ENST00000508583 KRTAP4-1Q9BYQ7 146 aa4.86□□□□□ -1.63
NUP54-207ENST00000508583 IGKV3D-7A0A0C4DH55 119 aa4.85□□□□□ -1.63
NUP54-207ENST00000508583 KRTAP16-1A8MUX0 517 aa4.85□□□□□ -1.63
NUP54-207ENST00000508583 C8orf17Q9NRJ1 99 aa4.85□□□□□ -1.63
NUP54-207ENST00000508583 ACYP1P07311 99 aa4.84□□□□□ -1.63
NUP54-207ENST00000508583 NOTCH2NLQ7Z3S9 236 aa4.84□□□□□ -1.63
NUP54-207ENST00000508583 LINC00846Q9NV44 126 aa4.83□□□□□ -1.64
NUP54-207ENST00000508583 FAM240AA0A1B0GVK7 77 aa4.82□□□□□ -1.64
NUP54-207ENST00000508583 hDV103S1A0JD37 113 aa4.81□□□□□ -1.64
NUP54-207ENST00000508583 K7EQZ3 153 aa4.81□□□□□ -1.64
NUP54-207ENST00000508583 Q8N9P0 234 aaPredicted RBP4.81□□□□□ -1.64
NUP54-207ENST00000508583 TMEM254Q8TBM7 123 aa4.81□□□□□ -1.64
NUP54-207ENST00000508583 A0A1B0GV90 55 aa4.8□□□□□ -1.64
NUP54-207ENST00000508583 CXCL6P80162 114 aa4.8□□□□□ -1.64
NUP54-207ENST00000508583 MRPL34Q9BQ48 92 aaKnown RBP4.8□□□□□ -1.64
NUP54-207ENST00000508583 MMP24-AS1A0A0U1RRL7 71 aa4.79□□□□□ -1.64
NUP54-207ENST00000508583 ZCCHC13Q8WW36 166 aaKnown RBP4.78□□□□□ -1.64
NUP54-207ENST00000508583 J3QR89 54 aa4.77□□□□□ -1.65
NUP54-207ENST00000508583 ATP5EP2Q5VTU8 51 aa4.77□□□□□ -1.65
NUP54-207ENST00000508583 CASC2Q6XLA1 102 aa4.77□□□□□ -1.65
NUP54-207ENST00000508583 FAT4Q6V0I7 4981 aa4.76□□□□□ -1.65
NUP54-207ENST00000508583 NDUFS5O43920 106 aa4.76□□□□□ -1.65
NUP54-207ENST00000508583 COX6B2Q6YFQ2 88 aa4.76□□□□□ -1.65
NUP54-207ENST00000508583 HCG22E2RYF7 251 aa4.75□□□□□ -1.65
NUP54-207ENST00000508583 PCP4P48539 62 aa4.75□□□□□ -1.65
NUP54-207ENST00000508583 Q8N9L7 120 aa4.75□□□□□ -1.65
NUP54-207ENST00000508583 WFDC13Q8IUB5 93 aa4.74□□□□□ -1.65
NUP54-207ENST00000508583 RBM12B-AS1Q9P1G2 102 aa4.73□□□□□ -1.65
NUP54-207ENST00000508583 KRTAP19-2Q3LHN2 52 aa4.71□□□□□ -1.66
NUP54-207ENST00000508583 SPINK7P58062 85 aa4.7□□□□□ -1.66
NUP54-207ENST00000508583 LINC00643Q86TS7 51 aa4.7□□□□□ -1.66
NUP54-207ENST00000508583 FAM236DA0A1B0GTK5 79 aa4.69□□□□□ -1.66
NUP54-207ENST00000508583 FAM236CP0DP71 79 aa4.69□□□□□ -1.66
NUP54-207ENST00000508583 KRTAP19-4Q3LI73 84 aa4.69□□□□□ -1.66
NUP54-207ENST00000508583 TP53AIP1Q9HCN2 124 aa4.69□□□□□ -1.66
NUP54-207ENST00000508583 HIST1H4AP62805 103 aaKnown RBP4.67□□□□□ -1.66
NUP54-207ENST00000508583 C7orf65Q6ZTY9 151 aa4.66□□□□□ -1.66
NUP54-207ENST00000508583 M0R2T5 61 aa4.65□□□□□ -1.67
NUP54-207ENST00000508583 HRES1P13985 223 aa4.65□□□□□ -1.67
NUP54-207ENST00000508583 MT1HP80294 61 aa4.64□□□□□ -1.67
NUP54-207ENST00000508583 IGKV2D-30A0A075B6S6 120 aa4.63□□□□□ -1.67
NUP54-207ENST00000508583 K7ERU9 68 aa4.63□□□□□ -1.67
NUP54-207ENST00000508583 IGKV2-30P06310 120 aa4.63□□□□□ -1.67
NUP54-207ENST00000508583 MPLKIPQ8TAP9 179 aa4.63□□□□□ -1.67
NUP54-207ENST00000508583 Q5W150 140 aa4.62□□□□□ -1.67
NUP54-207ENST00000508583 TRAV22A0A0B4J277 110 aa4.59□□□□□ -1.67
NUP54-207ENST00000508583 ATOX1O00244 68 aa4.58□□□□□ -1.68
NUP54-207ENST00000508583 UQCRQO14949 82 aa4.58□□□□□ -1.68
NUP54-207ENST00000508583 A0A087WVE0 104 aa4.56□□□□□ -1.68
NUP54-207ENST00000508583 LOC101927531A0A1B0GV80 90 aa4.55□□□□□ -1.68
NUP54-207ENST00000508583 IMUPQ9GZP8 106 aa4.55□□□□□ -1.68
NUP54-207ENST00000508583 FLGP20930 4061 aaPredicted RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms