RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 IGLV5-48A0A075B6I7 105 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 SPRR2BP35325 72 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 SMIM2Q9BVW6 85 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 SETXQ7Z333 2677 aaKnown RBP0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 IGSF10Q6WRI0 2623 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 VPS13BQ7Z7G8 4022 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 LYSTQ99698 3801 aa0.23□□□□□ -2.37
HMGB1P35-201ENST00000503360 ACANP16112 2415 aa0.22□□□□□ -2.37
HMGB1P35-201ENST00000503360 WFDC10BQ8IUB3 73 aa0.22□□□□□ -2.37
HMGB1P35-201ENST00000503360 KAAG1Q9UBP8 84 aa0.22□□□□□ -2.37
HMGB1P35-201ENST00000503360 NSD1Q96L73 2696 aaPredicted RBP0.22□□□□□ -2.37
HMGB1P35-201ENST00000503360 HRNRQ86YZ3 2850 aaPredicted RBP0.22□□□□□ -2.37
HMGB1P35-201ENST00000503360 PKD1L2Q7Z442 2459 aa0.21□□□□□ -2.38
HMGB1P35-201ENST00000503360 FAT4Q6V0I7 4981 aa0.21□□□□□ -2.38
HMGB1P35-201ENST00000503360 H3BNG1 76 aa0.21□□□□□ -2.38
HMGB1P35-201ENST00000503360 TFF3Q07654 80 aa0.21□□□□□ -2.38
HMGB1P35-201ENST00000503360 CELSR1Q9NYQ6 3014 aa0.2□□□□□ -2.38
HMGB1P35-201ENST00000503360 HECTD4Q9Y4D8 3996 aa0.2□□□□□ -2.38
HMGB1P35-201ENST00000503360 TNRC18O15417 2968 aaPredicted RBP0.2□□□□□ -2.38
HMGB1P35-201ENST00000503360 SAMD9LQ8IVG5 1584 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 TRPM2O94759 1503 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 MMP24-AS1A0A0U1RRL7 71 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 DEFB131AP59861 70 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 PKD1P98161 4303 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 STAB1Q9NY15 2570 aa0.19□□□□□ -2.38
HMGB1P35-201ENST00000503360 CLTCL1P53675 1640 aa0.18□□□□□ -2.38
HMGB1P35-201ENST00000503360 A8MTW9 85 aa0.18□□□□□ -2.38
HMGB1P35-201ENST00000503360 FLNBO75369 2602 aaKnown RBP0.18□□□□□ -2.38
HMGB1P35-201ENST00000503360 HSPG2P98160 4391 aa0.18□□□□□ -2.38
HMGB1P35-201ENST00000503360 DNAH3Q8TD57 4116 aa0.18□□□□□ -2.38
HMGB1P35-201ENST00000503360 COL7A1Q02388 2944 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 SETD2Q9BYW2 2564 aaPredicted RBP0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 FLNCQ14315 2725 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 SACSQ9NZJ4 4579 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 CUBNO60494 3623 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 M0QY20 66 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 DNAH11Q96DT5 4516 aa0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 ANK3Q12955 4377 aaKnown RBP0.17□□□□□ -2.38
HMGB1P35-201ENST00000503360 PKHD1P08F94 4074 aa0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 LRP1BQ9NZR2 4599 aa0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 FLNAP21333 2647 aaKnown RBP0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 NDUFA1O15239 70 aa0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 SPRR2AP35326 72 aa0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 SSPOA2VEC9 5147 aa0.16□□□□□ -2.38
HMGB1P35-201ENST00000503360 PKHD1L1Q86WI1 4243 aa0.15□□□□□ -2.38
HMGB1P35-201ENST00000503360 DNAH9Q9NYC9 4486 aa0.15□□□□□ -2.38
HMGB1P35-201ENST00000503360 M0QZ58 72 aa0.15□□□□□ -2.39
HMGB1P35-201ENST00000503360 TNP1P09430 55 aa0.15□□□□□ -2.39
HMGB1P35-201ENST00000503360 HMCN2Q8NDA2 5059 aa0.15□□□□□ -2.39
HMGB1P35-201ENST00000503360 MT1AP04731 61 aa0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 KRTAP6-2Q3LI66 62 aa0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 SPRR2GQ9BYE4 73 aa0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 DUOX1Q9NRD9 1551 aa0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 SONP18583 2426 aaKnown RBP0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 DCHS2Q6V1P9 2916 aa0.14□□□□□ -2.39
HMGB1P35-201ENST00000503360 SPTBN4Q9H254 2564 aa0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 APOBP04114 4563 aaKnown RBP0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 FAT3Q8TDW7 4589 aa0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 PDZD2O15018 2839 aa0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 NF1P21359 2839 aa0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 DEFB110Q30KQ9 67 aa0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 FLGP20930 4061 aaPredicted RBP0.13□□□□□ -2.39
HMGB1P35-201ENST00000503360 COL6A3P12111 3177 aa0.12□□□□□ -2.39
HMGB1P35-201ENST00000503360 GCN1Q92616 2671 aaKnown RBP0.12□□□□□ -2.39
HMGB1P35-201ENST00000503360 ANKHD1Q8IWZ3 2542 aaKnown RBP0.12□□□□□ -2.39
HMGB1P35-201ENST00000503360 ACACAQ13085 2346 aa0.12□□□□□ -2.39
HMGB1P35-201ENST00000503360 FAM186AA6NE01 2351 aa0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 DNAH2Q9P225 4427 aa0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 SPENQ96T58 3664 aaKnown RBP0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 SVEP1Q4LDE5 3571 aa0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 LRP2P98164 4655 aa0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 SRRM2Q9UQ35 2752 aaKnown RBP0.11□□□□□ -2.39
HMGB1P35-201ENST00000503360 RIF1Q5UIP0 2472 aaKnown RBP0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 ZZEF1O43149 2961 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 ANKRD11Q6UB99 2663 aaPredicted RBP0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 SPRR2EP22531 72 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 MAP1AP78559 2803 aaPredicted RBP0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 DNAH6Q9C0G6 4158 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 TEP1Q99973 2627 aaKnown RBP0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 MROH2BQ7Z745 1585 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 VPS13DQ5THJ4 4388 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 MTORP42345 2549 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 A0A0C4DFX4 3053 aa0.1□□□□□ -2.39
HMGB1P35-201ENST00000503360 DYNC2H1Q8NCM8 4307 aaKnown RBP0.09□□□□□ -2.39
HMGB1P35-201ENST00000503360 EPG5Q9HCE0 2579 aa0.09□□□□□ -2.39
HMGB1P35-201ENST00000503360 TENM2Q9NT68 2774 aa0.09□□□□□ -2.39
HMGB1P35-201ENST00000503360 SPG11Q96JI7 2443 aa0.09□□□□□ -2.4
HMGB1P35-201ENST00000503360 LAMA5O15230 3695 aa0.09□□□□□ -2.4
HMGB1P35-201ENST00000503360 LRRK2Q5S007 2527 aa0.09□□□□□ -2.4
HMGB1P35-201ENST00000503360 TACC2O95359 2948 aa0.08□□□□□ -2.4
HMGB1P35-201ENST00000503360 ACACBO00763 2458 aa0.08□□□□□ -2.4
HMGB1P35-201ENST00000503360 ZANQ9Y493 2812 aa0.08□□□□□ -2.4
HMGB1P35-201ENST00000503360 DMXL1Q9Y485 3027 aa0.08□□□□□ -2.4
HMGB1P35-201ENST00000503360 DNAH1Q9P2D7 4330 aa0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 SPRR2FQ96RM1 72 aa0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 RANBP2P49792 3224 aaKnown RBP0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 NBEAL1Q6ZS30 2694 aa0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 DNAH7Q8WXX0 4024 aa0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 HIVEP1P15822 2718 aa0.07□□□□□ -2.4
HMGB1P35-201ENST00000503360 GCC2Q8IWJ2 1684 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms