RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 HCG22E2RYF7 251 aa4.51□□□□□ -1.69
SYNE1-231ENST00000498751 MOBPQ13875 183 aa4.51□□□□□ -1.69
SYNE1-231ENST00000498751 Q8N9L7 120 aa4.51□□□□□ -1.69
SYNE1-231ENST00000498751 PKD1P98161 4303 aa4.5□□□□□ -1.69
SYNE1-231ENST00000498751 SPINK6Q6UWN8 80 aa4.5□□□□□ -1.69
SYNE1-231ENST00000498751 NDUFC1O43677 76 aa4.49□□□□□ -1.69
SYNE1-231ENST00000498751 RPS29P62273 56 aaKnown RBP4.49□□□□□ -1.69
SYNE1-231ENST00000498751 NDUFB1O75438 58 aa4.48□□□□□ -1.69
SYNE1-231ENST00000498751 TMEM258P61165 79 aa4.48□□□□□ -1.69
SYNE1-231ENST00000498751 KRTAP13-2Q52LG2 175 aa4.48□□□□□ -1.69
SYNE1-231ENST00000498751 KRTAP9-8Q9BYQ0 159 aa4.48□□□□□ -1.69
SYNE1-231ENST00000498751 KRTAP10-4P60372 401 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-231ENST00000498751 C5orf47Q569G3 176 aa4.47□□□□□ -1.69
SYNE1-231ENST00000498751 HYDINQ4G0P3 5121 aa4.47□□□□□ -1.69
SYNE1-231ENST00000498751 SACSQ9NZJ4 4579 aa4.46□□□□□ -1.7
SYNE1-231ENST00000498751 A0A087X002 238 aa4.46□□□□□ -1.7
SYNE1-231ENST00000498751 A0A0U1RQV1 116 aa4.46□□□□□ -1.7
SYNE1-231ENST00000498751 MMP24-AS1A0A0U1RRL7 71 aa4.46□□□□□ -1.7
SYNE1-231ENST00000498751 ANAPC11Q9NYG5 84 aa4.46□□□□□ -1.7
SYNE1-231ENST00000498751 A0A1B0GVX0 72 aa4.45□□□□□ -1.7
SYNE1-231ENST00000498751 H3BPC8 53 aa4.45□□□□□ -1.7
SYNE1-231ENST00000498751 H7BZZ5 65 aa4.45□□□□□ -1.7
SYNE1-231ENST00000498751 C20orf197Q8N268 126 aa4.45□□□□□ -1.7
SYNE1-231ENST00000498751 TMEM254Q8TBM7 123 aa4.45□□□□□ -1.7
SYNE1-231ENST00000498751 ZCCHC13Q8WW36 166 aaKnown RBP4.45□□□□□ -1.7
SYNE1-231ENST00000498751 RPS28P62857 69 aaKnown RBP4.44□□□□□ -1.7
SYNE1-231ENST00000498751 DEFB116Q30KQ4 102 aa4.44□□□□□ -1.7
SYNE1-231ENST00000498751 CASC2Q6XLA1 102 aa4.44□□□□□ -1.7
SYNE1-231ENST00000498751 CYSTM1Q9H1C7 97 aa4.44□□□□□ -1.7
SYNE1-231ENST00000498751 LRP1BQ9NZR2 4599 aa4.44□□□□□ -1.7
SYNE1-231ENST00000498751 C8orf87E5RJ46 101 aa4.43□□□□□ -1.7
SYNE1-231ENST00000498751 SPINK1P00995 79 aa4.43□□□□□ -1.7
SYNE1-231ENST00000498751 LIMD2Q9BT23 127 aa4.43□□□□□ -1.7
SYNE1-231ENST00000498751 TP53AIP1Q9HCN2 124 aa4.43□□□□□ -1.7
SYNE1-231ENST00000498751 C8orf17Q9NRJ1 99 aa4.43□□□□□ -1.7
SYNE1-231ENST00000498751 hDV103S1A0JD37 113 aa4.42□□□□□ -1.7
SYNE1-231ENST00000498751 ATP5EP56381 51 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-231ENST00000498751 SPAG11AQ6PDA7 123 aa4.42□□□□□ -1.7
SYNE1-231ENST00000498751 SRRM2Q9UQ35 2752 aaKnown RBP4.42□□□□□ -1.7
SYNE1-231ENST00000498751 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
SYNE1-231ENST00000498751 CDK2AP2O75956 126 aa4.4□□□□□ -1.71
SYNE1-231ENST00000498751 KRTAP15-1Q3LI76 137 aa4.39□□□□□ -1.71
SYNE1-231ENST00000498751 C1orf195Q5TG92 126 aa4.39□□□□□ -1.71
SYNE1-231ENST00000498751 HRCT1Q6UXD1 115 aa4.39□□□□□ -1.71
SYNE1-231ENST00000498751 WFDC13Q8IUB5 93 aa4.39□□□□□ -1.71
SYNE1-231ENST00000498751 TYMSOSQ8TAI1 123 aa4.39□□□□□ -1.71
SYNE1-231ENST00000498751 MRPL34Q9BQ48 92 aaKnown RBP4.39□□□□□ -1.71
SYNE1-231ENST00000498751 Q8N9P0 234 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-231ENST00000498751 SNURFQ9Y675 71 aa4.37□□□□□ -1.71
SYNE1-231ENST00000498751 RYR2Q92736 4967 aa4.36□□□□□ -1.71
SYNE1-231ENST00000498751 TRAV22A0A0B4J277 110 aa4.36□□□□□ -1.71
SYNE1-231ENST00000498751 FAM236DA0A1B0GTK5 79 aa4.36□□□□□ -1.71
SYNE1-231ENST00000498751 FAM236CP0DP71 79 aa4.36□□□□□ -1.71
SYNE1-231ENST00000498751 MP68P56378 58 aa4.36□□□□□ -1.71
SYNE1-231ENST00000498751 DYNC1H1Q14204 4646 aaKnown RBP4.36□□□□□ -1.71
SYNE1-231ENST00000498751 IGHV6-1A0A0B4J1U7 121 aa4.35□□□□□ -1.71
SYNE1-231ENST00000498751 LINC00304Q8N9R0 145 aa4.35□□□□□ -1.71
SYNE1-231ENST00000498751 SPANXA2-OT1Q8N9U9 137 aa4.35□□□□□ -1.71
SYNE1-231ENST00000498751 KRTAP16-1A8MUX0 517 aa4.34□□□□□ -1.71
SYNE1-231ENST00000498751 KRTAP13-3Q3SY46 172 aa4.34□□□□□ -1.71
SYNE1-231ENST00000498751 CYP4F30PQ9H0H9 118 aa4.34□□□□□ -1.71
SYNE1-231ENST00000498751 VPS13BQ7Z7G8 4022 aa4.34□□□□□ -1.71
SYNE1-231ENST00000498751 H0Y9P7 68 aa4.33□□□□□ -1.72
SYNE1-231ENST00000498751 SMR3BP02814 79 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-231ENST00000498751 LINC00313P59037 77 aa4.33□□□□□ -1.72
SYNE1-231ENST00000498751 NOTCH2NLQ7Z3S9 236 aa4.33□□□□□ -1.72
SYNE1-231ENST00000498751 SERP1Q9Y6X1 66 aa4.33□□□□□ -1.72
SYNE1-231ENST00000498751 PKHD1P08F94 4074 aa4.32□□□□□ -1.72
SYNE1-231ENST00000498751 PRR26Q8N8Z3 221 aa4.32□□□□□ -1.72
SYNE1-231ENST00000498751 APOBP04114 4563 aaKnown RBP4.32□□□□□ -1.72
SYNE1-231ENST00000498751 KMT2CQ8NEZ4 4911 aaKnown RBP4.31□□□□□ -1.72
SYNE1-231ENST00000498751 LINC00208Q96KT6 92 aa4.31□□□□□ -1.72
SYNE1-231ENST00000498751 KRTAP10-8P60410 259 aa4.3□□□□□ -1.72
SYNE1-231ENST00000498751 LOC101927531A0A1B0GV80 90 aa4.29□□□□□ -1.72
SYNE1-231ENST00000498751 C1orf64Q8NEQ6 169 aa4.29□□□□□ -1.72
SYNE1-231ENST00000498751 IGLV7-46A0A075B6I9 117 aa4.28□□□□□ -1.72
SYNE1-231ENST00000498751 OXTP01178 125 aa4.26□□□□□ -1.73
SYNE1-231ENST00000498751 Q5VSD8 79 aa4.26□□□□□ -1.73
SYNE1-231ENST00000498751 Q5W150 140 aa4.25□□□□□ -1.73
SYNE1-231ENST00000498751 C20orf166-AS1Q96NR2 134 aa4.25□□□□□ -1.73
SYNE1-231ENST00000498751 NDUFS5O43920 106 aa4.24□□□□□ -1.73
SYNE1-231ENST00000498751 PKHD1L1Q86WI1 4243 aa4.24□□□□□ -1.73
SYNE1-231ENST00000498751 SMIM26A0A096LP01 95 aa4.23□□□□□ -1.73
SYNE1-231ENST00000498751 A8MUU9 505 aa4.23□□□□□ -1.73
SYNE1-231ENST00000498751 FP248Q71RG6 208 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-231ENST00000498751 IGKV2-30P06310 120 aa4.22□□□□□ -1.73
SYNE1-231ENST00000498751 FAT1Q14517 4588 aa4.22□□□□□ -1.73
SYNE1-231ENST00000498751 MT1HL1P0DM35 61 aa4.19□□□□□ -1.74
SYNE1-231ENST00000498751 RYR3Q15413 4870 aa4.18□□□□□ -1.74
SYNE1-231ENST00000498751 Q75L30 129 aa4.18□□□□□ -1.74
SYNE1-231ENST00000498751 HSPG2P98160 4391 aa4.17□□□□□ -1.74
SYNE1-231ENST00000498751 FLG2Q5D862 2391 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-231ENST00000498751 C4orf26Q17RF5 130 aa4.16□□□□□ -1.74
SYNE1-231ENST00000498751 DMAC1Q96GE9 116 aa4.16□□□□□ -1.74
SYNE1-231ENST00000498751 RYR1P21817 5038 aa4.16□□□□□ -1.74
SYNE1-231ENST00000498751 Q1T7F1 81 aa4.15□□□□□ -1.75
SYNE1-231ENST00000498751 HRES1P13985 223 aa4.14□□□□□ -1.75
SYNE1-231ENST00000498751 PCOTHQ58A44 107 aa4.14□□□□□ -1.75
SYNE1-231ENST00000498751 C7orf65Q6ZTY9 151 aa4.14□□□□□ -1.75
SYNE1-231ENST00000498751 V9GYY9 64 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms