RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 UNQ6190/PRO20217Q6UXQ8 127 aa3.25□□□□□ -1.89
USP54-216ENST00000498143 PRLHP81277 87 aa3.24□□□□□ -1.89
USP54-216ENST00000498143 WDFY3Q8IZQ1 3526 aa3.24□□□□□ -1.89
USP54-216ENST00000498143 C9orf163Q8N9P6 203 aa3.24□□□□□ -1.89
USP54-216ENST00000498143 PANO1I0J062 215 aa3.24□□□□□ -1.89
USP54-216ENST00000498143 SPINK1P00995 79 aa3.24□□□□□ -1.89
USP54-216ENST00000498143 LELP1Q5T871 98 aa3.23□□□□□ -1.89
USP54-216ENST00000498143 SPINK6Q6UWN8 80 aa3.23□□□□□ -1.89
USP54-216ENST00000498143 KRTAP9-2Q9BYQ4 174 aa3.23□□□□□ -1.89
USP54-216ENST00000498143 LINC00483Q53H64 154 aa3.23□□□□□ -1.89
USP54-216ENST00000498143 A0A087WSZ3 146 aa3.23□□□□□ -1.89
USP54-216ENST00000498143 ST20-AS1Q8NBB2 130 aa3.22□□□□□ -1.89
USP54-216ENST00000498143 A0A1W2PNM2 257 aa3.22□□□□□ -1.89
USP54-216ENST00000498143 SPATA8Q6RVD6 105 aa3.22□□□□□ -1.89
USP54-216ENST00000498143 CSMD2Q7Z408 3487 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 H3BNG1 76 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 CSMD1Q96PZ7 3565 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 A0A1B0GVX0 72 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 A0A1B0GUV1 79 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 A8MU10 97 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 K7EQZ3 153 aa3.21□□□□□ -1.9
USP54-216ENST00000498143 A0A096LNI7 61 aa3.19□□□□□ -1.9
USP54-216ENST00000498143 IGLV6-57P01721 117 aa3.19□□□□□ -1.9
USP54-216ENST00000498143 Q6ZSA8 131 aa3.17□□□□□ -1.9
USP54-216ENST00000498143 Q8NDZ9 215 aa3.17□□□□□ -1.9
USP54-216ENST00000498143 HYDINQ4G0P3 5121 aa3.16□□□□□ -1.9
USP54-216ENST00000498143 CNBPP62633 177 aaKnown RBP3.16□□□□□ -1.9
USP54-216ENST00000498143 IGKV2-30P06310 120 aa3.16□□□□□ -1.9
USP54-216ENST00000498143 LINC00304Q8N9R0 145 aa3.16□□□□□ -1.9
USP54-216ENST00000498143 A8MUU9 505 aa3.16□□□□□ -1.9
USP54-216ENST00000498143 MRPL34Q9BQ48 92 aaKnown RBP3.16□□□□□ -1.9
USP54-216ENST00000498143 Q6ZRX8 168 aa3.15□□□□□ -1.91
USP54-216ENST00000498143 IGKV2D-30A0A075B6S6 120 aa3.15□□□□□ -1.91
USP54-216ENST00000498143 KLK9Q2XQG4 91 aa3.14□□□□□ -1.91
USP54-216ENST00000498143 CRCT1Q9UGL9 99 aa3.14□□□□□ -1.91
USP54-216ENST00000498143 ZCCHC13Q8WW36 166 aaKnown RBP3.13□□□□□ -1.91
USP54-216ENST00000498143 Q5W150 140 aa3.13□□□□□ -1.91
USP54-216ENST00000498143 A0A1B0GU33 70 aa3.12□□□□□ -1.91
USP54-216ENST00000498143 HRES1P13985 223 aa3.12□□□□□ -1.91
USP54-216ENST00000498143 GVQW2A0A096LPI5 108 aaPredicted RBP3.12□□□□□ -1.91
USP54-216ENST00000498143 Q8N377 158 aa3.11□□□□□ -1.91
USP54-216ENST00000498143 SPACA4Q8TDM5 124 aa3.11□□□□□ -1.91
USP54-216ENST00000498143 IGLV5-48A0A075B6I7 105 aa3.1□□□□□ -1.91
USP54-216ENST00000498143 DSCR10P59022 87 aa3.1□□□□□ -1.91
USP54-216ENST00000498143 RYR1P21817 5038 aa3.09□□□□□ -1.91
USP54-216ENST00000498143 A0A1W2PNN7 141 aa3.09□□□□□ -1.91
USP54-216ENST00000498143 HRNRQ86YZ3 2850 aaPredicted RBP3.09□□□□□ -1.92
USP54-216ENST00000498143 SPRR4Q96PI1 79 aa3.08□□□□□ -1.92
USP54-216ENST00000498143 ZNF861PO60384 105 aa3.07□□□□□ -1.92
USP54-216ENST00000498143 KRTAP1-5Q9BYS1 174 aa3.07□□□□□ -1.92
USP54-216ENST00000498143 PCLOQ9Y6V0 5065 aa3.07□□□□□ -1.92
USP54-216ENST00000498143 IGFL1Q6UW32 110 aa3.07□□□□□ -1.92
USP54-216ENST00000498143 HERC2O95714 4834 aa3.06□□□□□ -1.92
USP54-216ENST00000498143 LINC00612Q8N6U2 182 aa3.06□□□□□ -1.92
USP54-216ENST00000498143 SPENQ96T58 3664 aaKnown RBP3.04□□□□□ -1.92
USP54-216ENST00000498143 C15orf56Q8N910 161 aa3.04□□□□□ -1.92
USP54-216ENST00000498143 PLAC4Q8WY50 150 aa3.04□□□□□ -1.92
USP54-216ENST00000498143 KIAA1109Q2LD37 5005 aa3.04□□□□□ -1.92
USP54-216ENST00000498143 RPL37P61927 97 aaKnown RBP3.04□□□□□ -1.92
USP54-216ENST00000498143 PLAC8Q9NZF1 115 aa3.03□□□□□ -1.92
USP54-216ENST00000498143 A0A0G2JQZ4 141 aa3.02□□□□□ -1.93
USP54-216ENST00000498143 R4GN34 69 aa3.02□□□□□ -1.93
USP54-216ENST00000498143 KRTAP9-7A8MTY7 169 aa3.02□□□□□ -1.93
USP54-216ENST00000498143 KRTAP11-1Q8IUC1 163 aa3.02□□□□□ -1.93
USP54-216ENST00000498143 PP632Q6XCG6 107 aa3.02□□□□□ -1.93
USP54-216ENST00000498143 FAM168BA1KXE4 195 aa3.01□□□□□ -1.93
USP54-216ENST00000498143 RYR3Q15413 4870 aa3□□□□□ -1.93
USP54-216ENST00000498143 Q96NJ1 140 aa3□□□□□ -1.93
USP54-216ENST00000498143 KRTAP4-16G5E9R7 235 aaPredicted RBP3□□□□□ -1.93
USP54-216ENST00000498143 PRR34Q9NV39 138 aa2.99□□□□□ -1.93
USP54-216ENST00000498143 P0C880 135 aa2.99□□□□□ -1.93
USP54-216ENST00000498143 C9orf92A6NGG3 77 aa2.98□□□□□ -1.93
USP54-216ENST00000498143 A0A0D9SG42 100 aa2.98□□□□□ -1.93
USP54-216ENST00000498143 GIG44P09565 113 aaPredicted RBP2.98□□□□□ -1.93
USP54-216ENST00000498143 MMP24-AS1A0A0U1RRL7 71 aa2.97□□□□□ -1.93
USP54-216ENST00000498143 SVEP1Q4LDE5 3571 aa2.97□□□□□ -1.93
USP54-216ENST00000498143 UBR4Q5T4S7 5183 aa2.96□□□□□ -1.94
USP54-216ENST00000498143 BSNQ9UPA5 3926 aa2.95□□□□□ -1.94
USP54-216ENST00000498143 H1FX-AS1Q4G0G2 97 aa2.95□□□□□ -1.94
USP54-216ENST00000498143 Q6ZRN7 208 aaPredicted RBP2.95□□□□□ -1.94
USP54-216ENST00000498143 RYR2Q92736 4967 aa2.94□□□□□ -1.94
USP54-216ENST00000498143 LINC00472Q9H8W2 130 aa2.93□□□□□ -1.94
USP54-216ENST00000498143 KRTAP19-4Q3LI73 84 aa2.93□□□□□ -1.94
USP54-216ENST00000498143 ANAPC11Q9NYG5 84 aa2.92□□□□□ -1.94
USP54-216ENST00000498143 PRO2289Q9P1D8 64 aa2.92□□□□□ -1.94
USP54-216ENST00000498143 KRTAP10-10P60014 251 aa2.91□□□□□ -1.94
USP54-216ENST00000498143 SPRR1AP35321 89 aa2.9□□□□□ -1.94
USP54-216ENST00000498143 XP32Q5T750 250 aa2.9□□□□□ -1.94
USP54-216ENST00000498143 KRTAP26-1Q6PEX3 210 aa2.89□□□□□ -1.95
USP54-216ENST00000498143 TRRAPQ9Y4A5 3859 aa2.88□□□□□ -1.95
USP54-216ENST00000498143 EPPK1P58107 5090 aaKnown RBP2.88□□□□□ -1.95
USP54-216ENST00000498143 FSIP2Q5CZC0 6907 aa2.87□□□□□ -1.95
USP54-216ENST00000498143 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
USP54-216ENST00000498143 INE1O15225 51 aa2.85□□□□□ -1.95
USP54-216ENST00000498143 SPRR1BP22528 89 aa2.85□□□□□ -1.95
USP54-216ENST00000498143 KRTAP3-1Q9BYR8 98 aa2.85□□□□□ -1.95
USP54-216ENST00000498143 KMT2CQ8NEZ4 4911 aaKnown RBP2.85□□□□□ -1.95
USP54-216ENST00000498143 KRTAP10-8P60410 259 aa2.85□□□□□ -1.95
USP54-216ENST00000498143 ANK3Q12955 4377 aaKnown RBP2.84□□□□□ -1.95
USP54-216ENST00000498143 ABCA13Q86UQ4 5058 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms