RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 A8MUN3 132 aa4.93□□□□□ -1.62
USP54-215ENST00000497106 DYNC2H1Q8NCM8 4307 aaKnown RBP4.93□□□□□ -1.62
USP54-215ENST00000497106 H0Y9P7 68 aa4.92□□□□□ -1.62
USP54-215ENST00000497106 CHKB-CPT1BH3BT56 60 aa4.92□□□□□ -1.62
USP54-215ENST00000497106 A0A087X002 238 aa4.91□□□□□ -1.62
USP54-215ENST00000497106 CYP4F30PQ9H0H9 118 aa4.91□□□□□ -1.62
USP54-215ENST00000497106 Q8N1X5 172 aa4.91□□□□□ -1.62
USP54-215ENST00000497106 MEGF8Q7Z7M0 2845 aa4.9□□□□□ -1.62
USP54-215ENST00000497106 A6NN06 94 aa4.9□□□□□ -1.63
USP54-215ENST00000497106 VPS13DQ5THJ4 4388 aa4.9□□□□□ -1.63
USP54-215ENST00000497106 J3QL48 77 aa4.89□□□□□ -1.63
USP54-215ENST00000497106 KRTAP13-2Q52LG2 175 aa4.89□□□□□ -1.63
USP54-215ENST00000497106 LINC00208Q96KT6 92 aa4.89□□□□□ -1.63
USP54-215ENST00000497106 C1orf64Q8NEQ6 169 aa4.89□□□□□ -1.63
USP54-215ENST00000497106 KRTAP1-4P0C5Y4 121 aa4.88□□□□□ -1.63
USP54-215ENST00000497106 MMP24-AS1A0A0U1RRL7 71 aa4.88□□□□□ -1.63
USP54-215ENST00000497106 LOC101927531A0A1B0GV80 90 aa4.88□□□□□ -1.63
USP54-215ENST00000497106 Q96NJ1 140 aa4.87□□□□□ -1.63
USP54-215ENST00000497106 DNAH6Q9C0G6 4158 aa4.87□□□□□ -1.63
USP54-215ENST00000497106 Q5VV11 94 aa4.87□□□□□ -1.63
USP54-215ENST00000497106 TENM2Q9NT68 2774 aa4.86□□□□□ -1.63
USP54-215ENST00000497106 A6NED7 52 aa4.85□□□□□ -1.63
USP54-215ENST00000497106 OCR1Q9BZK8 76 aa4.85□□□□□ -1.63
USP54-215ENST00000497106 DNHD1Q96M86 4753 aa4.85□□□□□ -1.63
USP54-215ENST00000497106 PRR15LQ9BU68 103 aa4.85□□□□□ -1.63
USP54-215ENST00000497106 CDC42SE1Q9NRR8 79 aa4.84□□□□□ -1.63
USP54-215ENST00000497106 PLECQ15149 4684 aaKnown RBP4.84□□□□□ -1.63
USP54-215ENST00000497106 PRKDCP78527 4128 aaKnown RBP4.83□□□□□ -1.64
USP54-215ENST00000497106 LINC01554Q52M75 96 aa4.83□□□□□ -1.64
USP54-215ENST00000497106 Q75L30 129 aa4.82□□□□□ -1.64
USP54-215ENST00000497106 PRR4Q16378 134 aa4.81□□□□□ -1.64
USP54-215ENST00000497106 KRTAP29-1A8MX34 341 aaPredicted RBP4.81□□□□□ -1.64
USP54-215ENST00000497106 IGLV7-46A0A075B6I9 117 aa4.8□□□□□ -1.64
USP54-215ENST00000497106 K7ERS5 55 aa4.79□□□□□ -1.64
USP54-215ENST00000497106 DNAH1Q9P2D7 4330 aa4.79□□□□□ -1.64
USP54-215ENST00000497106 A8MU10 97 aa4.78□□□□□ -1.64
USP54-215ENST00000497106 STARD9Q9P2P6 4700 aa4.78□□□□□ -1.64
USP54-215ENST00000497106 DNAH7Q8WXX0 4024 aa4.78□□□□□ -1.64
USP54-215ENST00000497106 C9orf92A6NGG3 77 aa4.77□□□□□ -1.65
USP54-215ENST00000497106 DNAH17Q9UFH2 4485 aa4.77□□□□□ -1.65
USP54-215ENST00000497106 RETNLBQ9BQ08 111 aa4.77□□□□□ -1.65
USP54-215ENST00000497106 IGKV2D-30A0A075B6S6 120 aa4.76□□□□□ -1.65
USP54-215ENST00000497106 IGKV2-30P06310 120 aa4.76□□□□□ -1.65
USP54-215ENST00000497106 Q8N9P0 234 aaPredicted RBP4.76□□□□□ -1.65
USP54-215ENST00000497106 PCOTHQ58A44 107 aa4.76□□□□□ -1.65
USP54-215ENST00000497106 TGP01266 2768 aa4.76□□□□□ -1.65
USP54-215ENST00000497106 SPANXA2-OT1Q8N9U9 137 aa4.76□□□□□ -1.65
USP54-215ENST00000497106 ZCCHC13Q8WW36 166 aaKnown RBP4.74□□□□□ -1.65
USP54-215ENST00000497106 COL7A1Q02388 2944 aa4.73□□□□□ -1.65
USP54-215ENST00000497106 DNAH10Q8IVF4 4471 aa4.73□□□□□ -1.65
USP54-215ENST00000497106 ACYP2P14621 99 aa4.72□□□□□ -1.65
USP54-215ENST00000497106 KRTAP10-8P60410 259 aa4.72□□□□□ -1.65
USP54-215ENST00000497106 KRTAP10-4P60372 401 aaPredicted RBP4.7□□□□□ -1.66
USP54-215ENST00000497106 DNAH2Q9P225 4427 aa4.69□□□□□ -1.66
USP54-215ENST00000497106 Q5W150 140 aa4.68□□□□□ -1.66
USP54-215ENST00000497106 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
USP54-215ENST00000497106 DNAH11Q96DT5 4516 aa4.67□□□□□ -1.66
USP54-215ENST00000497106 NOTCH2NLQ7Z3S9 236 aa4.66□□□□□ -1.66
USP54-215ENST00000497106 COX6B2Q6YFQ2 88 aa4.66□□□□□ -1.66
USP54-215ENST00000497106 C20orf166-AS1Q96NR2 134 aa4.65□□□□□ -1.66
USP54-215ENST00000497106 LINC01558Q9Y6Z2 57 aa4.65□□□□□ -1.66
USP54-215ENST00000497106 SEC61BP60468 96 aaKnown RBP4.65□□□□□ -1.66
USP54-215ENST00000497106 A8MUU9 505 aa4.65□□□□□ -1.67
USP54-215ENST00000497106 DNAH8Q96JB1 4490 aa4.64□□□□□ -1.67
USP54-215ENST00000497106 A0A0A0MQY5 61 aa4.63□□□□□ -1.67
USP54-215ENST00000497106 COA5Q86WW8 74 aa4.62□□□□□ -1.67
USP54-215ENST00000497106 RPL37P61927 97 aaKnown RBP4.62□□□□□ -1.67
USP54-215ENST00000497106 KRTAP16-1A8MUX0 517 aa4.61□□□□□ -1.67
USP54-215ENST00000497106 HRES1P13985 223 aa4.61□□□□□ -1.67
USP54-215ENST00000497106 TPRXLQ17RH7 258 aa4.6□□□□□ -1.67
USP54-215ENST00000497106 DYNC1H1Q14204 4646 aaKnown RBP4.6□□□□□ -1.67
USP54-215ENST00000497106 SPINK7P58062 85 aa4.59□□□□□ -1.68
USP54-215ENST00000497106 CSMD3Q7Z407 3707 aa4.58□□□□□ -1.68
USP54-215ENST00000497106 SACSQ9NZJ4 4579 aa4.57□□□□□ -1.68
USP54-215ENST00000497106 DNAH5Q8TE73 4624 aa4.56□□□□□ -1.68
USP54-215ENST00000497106 KMT2AQ03164 3969 aa4.56□□□□□ -1.68
USP54-215ENST00000497106 KRTAP13-3Q3SY46 172 aa4.56□□□□□ -1.68
USP54-215ENST00000497106 DMAC1Q96GE9 116 aa4.55□□□□□ -1.68
USP54-215ENST00000497106 ADM2Q7Z4H4 148 aa4.55□□□□□ -1.68
USP54-215ENST00000497106 XP32Q5T750 250 aa4.54□□□□□ -1.68
USP54-215ENST00000497106 RYR2Q92736 4967 aa4.54□□□□□ -1.68
USP54-215ENST00000497106 FAT2Q9NYQ8 4349 aa4.53□□□□□ -1.68
USP54-215ENST00000497106 MT1HL1P0DM35 61 aa4.53□□□□□ -1.68
USP54-215ENST00000497106 LRP1BQ9NZR2 4599 aa4.53□□□□□ -1.68
USP54-215ENST00000497106 CSAG1Q6PB30 78 aa4.52□□□□□ -1.69
USP54-215ENST00000497106 A0A1B0GU69 56 aa4.51□□□□□ -1.69
USP54-215ENST00000497106 DMBT1Q9UGM3 2413 aaPredicted RBP4.51□□□□□ -1.69
USP54-215ENST00000497106 FLG2Q5D862 2391 aaPredicted RBP4.49□□□□□ -1.69
USP54-215ENST00000497106 HECTD4Q9Y4D8 3996 aa4.49□□□□□ -1.69
USP54-215ENST00000497106 ROMO1P60602 79 aa4.46□□□□□ -1.69
USP54-215ENST00000497106 LYSTQ99698 3801 aa4.45□□□□□ -1.7
USP54-215ENST00000497106 FRAS1Q86XX4 4008 aa4.45□□□□□ -1.7
USP54-215ENST00000497106 S4R3F8 94 aa4.45□□□□□ -1.7
USP54-215ENST00000497106 SPATA8Q6RVD6 105 aa4.44□□□□□ -1.7
USP54-215ENST00000497106 MIR22HGQ0VDD5 57 aa4.43□□□□□ -1.7
USP54-215ENST00000497106 HYDINQ4G0P3 5121 aa4.43□□□□□ -1.7
USP54-215ENST00000497106 APOBP04114 4563 aaKnown RBP4.42□□□□□ -1.7
USP54-215ENST00000497106 H1FX-AS1Q4G0G2 97 aa4.42□□□□□ -1.7
USP54-215ENST00000497106 PKD1P98161 4303 aa4.41□□□□□ -1.7
USP54-215ENST00000497106 UQCR11O14957 56 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms