RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PANO1I0J062 215 aa9.91□□□□□ -0.82
CCDC88B-209ENST00000494080 LCE6AA0A183 80 aa9.9□□□□□ -0.82
CCDC88B-209ENST00000494080 PLAC8Q9NZF1 115 aa9.9□□□□□ -0.82
CCDC88B-209ENST00000494080 SPINT4Q6UDR6 99 aa9.89□□□□□ -0.83
CCDC88B-209ENST00000494080 FBN1P35555 2871 aaKnown RBP9.86□□□□□ -0.83
CCDC88B-209ENST00000494080 SPRR1BP22528 89 aa9.86□□□□□ -0.83
CCDC88B-209ENST00000494080 VWFP04275 2813 aa9.85□□□□□ -0.83
CCDC88B-209ENST00000494080 Q8N1X5 172 aa9.85□□□□□ -0.83
CCDC88B-209ENST00000494080 OTOGQ6ZRI0 2925 aa9.85□□□□□ -0.83
CCDC88B-209ENST00000494080 A6NN06 94 aa9.84□□□□□ -0.83
CCDC88B-209ENST00000494080 CSAG1Q6PB30 78 aa9.84□□□□□ -0.83
CCDC88B-209ENST00000494080 PDZD2O15018 2839 aa9.82□□□□□ -0.84
CCDC88B-209ENST00000494080 J3QL48 77 aa9.8□□□□□ -0.84
CCDC88B-209ENST00000494080 KRTAP10-2P60368 255 aa9.8□□□□□ -0.84
CCDC88B-209ENST00000494080 SPENQ96T58 3664 aaKnown RBP9.8□□□□□ -0.84
CCDC88B-209ENST00000494080 NBPF19A0A087WUL8 3843 aa9.76□□□□□ -0.85
CCDC88B-209ENST00000494080 KRTAP7-1Q8IUC3 87 aa9.76□□□□□ -0.85
CCDC88B-209ENST00000494080 KRTAP11-1Q8IUC1 163 aa9.75□□□□□ -0.85
CCDC88B-209ENST00000494080 CSMD2Q7Z408 3487 aa9.75□□□□□ -0.85
CCDC88B-209ENST00000494080 KRTAP10-1P60331 282 aa9.73□□□□□ -0.85
CCDC88B-209ENST00000494080 Q6ZR54 194 aa9.72□□□□□ -0.85
CCDC88B-209ENST00000494080 ADM2Q7Z4H4 148 aa9.72□□□□□ -0.85
CCDC88B-209ENST00000494080 COX6B2Q6YFQ2 88 aa9.72□□□□□ -0.85
CCDC88B-209ENST00000494080 ZFHX3Q15911 3703 aa9.71□□□□□ -0.85
CCDC88B-209ENST00000494080 PKD1L1Q8TDX9 2849 aa9.71□□□□□ -0.85
CCDC88B-209ENST00000494080 Q5W150 140 aa9.71□□□□□ -0.86
CCDC88B-209ENST00000494080 Q6ZRN7 208 aaPredicted RBP9.67□□□□□ -0.86
CCDC88B-209ENST00000494080 A0A0D9SG42 100 aa9.64□□□□□ -0.87
CCDC88B-209ENST00000494080 A0A087X002 238 aa9.63□□□□□ -0.87
CCDC88B-209ENST00000494080 NOTCH2NLQ7Z3S9 236 aa9.63□□□□□ -0.87
CCDC88B-209ENST00000494080 A0A1B0GU33 70 aa9.62□□□□□ -0.87
CCDC88B-209ENST00000494080 DMAC1Q96GE9 116 aa9.62□□□□□ -0.87
CCDC88B-209ENST00000494080 CRIPTQ9P021 101 aa9.6□□□□□ -0.87
CCDC88B-209ENST00000494080 LINC00483Q53H64 154 aa9.58□□□□□ -0.88
CCDC88B-209ENST00000494080 BSNQ9UPA5 3926 aa9.56□□□□□ -0.88
CCDC88B-209ENST00000494080 TGP01266 2768 aa9.52□□□□□ -0.88
CCDC88B-209ENST00000494080 SPATA8Q6RVD6 105 aa9.52□□□□□ -0.89
CCDC88B-209ENST00000494080 TENM2Q9NT68 2774 aa9.49□□□□□ -0.89
CCDC88B-209ENST00000494080 ASB16-AS1Q495Z4 193 aa9.49□□□□□ -0.89
CCDC88B-209ENST00000494080 KRTAP13-1Q8IUC0 172 aa9.42□□□□□ -0.9
CCDC88B-209ENST00000494080 Q6ZSA8 131 aa9.4□□□□□ -0.9
CCDC88B-209ENST00000494080 Q5VSD8 79 aa9.37□□□□□ -0.91
CCDC88B-209ENST00000494080 SRRM2Q9UQ35 2752 aaKnown RBP9.34□□□□□ -0.91
CCDC88B-209ENST00000494080 KRTAP13-2Q52LG2 175 aa9.31□□□□□ -0.92
CCDC88B-209ENST00000494080 TRRAPQ9Y4A5 3859 aa9.28□□□□□ -0.92
CCDC88B-209ENST00000494080 H1FX-AS1Q4G0G2 97 aa9.26□□□□□ -0.93
CCDC88B-209ENST00000494080 KRTAP25-1Q3LHN0 102 aa9.25□□□□□ -0.93
CCDC88B-209ENST00000494080 ROMO1P60602 79 aa9.21□□□□□ -0.93
CCDC88B-209ENST00000494080 RPL37P61927 97 aaKnown RBP9.2□□□□□ -0.94
CCDC88B-209ENST00000494080 CAMK2N1Q7Z7J9 78 aa9.2□□□□□ -0.94
CCDC88B-209ENST00000494080 M0R2T5 61 aa9.17□□□□□ -0.94
CCDC88B-209ENST00000494080 ANK3Q12955 4377 aaKnown RBP9.14□□□□□ -0.95
CCDC88B-209ENST00000494080 VPS13CQ709C8 3753 aa9.12□□□□□ -0.95
CCDC88B-209ENST00000494080 KRTAP21-3Q3LHN1 58 aa9.1□□□□□ -0.95
CCDC88B-209ENST00000494080 S4R3F8 94 aa9.08□□□□□ -0.96
CCDC88B-209ENST00000494080 NDUFAF8A1L188 74 aa9.06□□□□□ -0.96
CCDC88B-209ENST00000494080 LUZP6Q538Z0 58 aa9.04□□□□□ -0.96
CCDC88B-209ENST00000494080 R4GN34 69 aa9.04□□□□□ -0.96
CCDC88B-209ENST00000494080 FBN3Q75N90 2809 aa9.04□□□□□ -0.96
CCDC88B-209ENST00000494080 A8MUU9 505 aa9.03□□□□□ -0.96
CCDC88B-209ENST00000494080 KRTAP16-1A8MUX0 517 aa9.02□□□□□ -0.97
CCDC88B-209ENST00000494080 RPS29P62273 56 aaKnown RBP9□□□□□ -0.97
CCDC88B-209ENST00000494080 KRTAP1-4P0C5Y4 121 aa9□□□□□ -0.97
CCDC88B-209ENST00000494080 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
CCDC88B-209ENST00000494080 ZNF469Q96JG9 3925 aaPredicted RBP8.94□□□□□ -0.98
CCDC88B-209ENST00000494080 H0YAA0 97 aa8.88□□□□□ -0.99
CCDC88B-209ENST00000494080 M0QZ58 72 aa8.88□□□□□ -0.99
CCDC88B-209ENST00000494080 MEGF8Q7Z7M0 2845 aa8.86□□□□□ -0.99
CCDC88B-209ENST00000494080 A0A0A0MQY5 61 aa8.83□□□□□ -1
CCDC88B-209ENST00000494080 KRTAP13-3Q3SY46 172 aa8.83□□□□□ -1
CCDC88B-209ENST00000494080 COL7A1Q02388 2944 aa8.81□□□□□ -1
CCDC88B-209ENST00000494080 C20orf166-AS1Q96NR2 134 aa8.76□□□□□ -1.01
CCDC88B-209ENST00000494080 C10orf95Q9H7T3 257 aa8.73□□□□□ -1.01
CCDC88B-209ENST00000494080 XP32Q5T750 250 aa8.6□□□□□ -1.03
CCDC88B-209ENST00000494080 A0A1B0GVY2 172 aa8.56□□□□□ -1.04
CCDC88B-209ENST00000494080 CSMD3Q7Z407 3707 aa8.53□□□□□ -1.04
CCDC88B-209ENST00000494080 AKAP9Q99996 3911 aa8.48□□□□□ -1.05
CCDC88B-209ENST00000494080 PLAC4Q8WY50 150 aa8.47□□□□□ -1.05
CCDC88B-209ENST00000494080 HUWE1Q7Z6Z7 4374 aaKnown RBP8.43□□□□□ -1.06
CCDC88B-209ENST00000494080 P0C880 135 aa8.42□□□□□ -1.06
CCDC88B-209ENST00000494080 KRTAP10-8P60410 259 aa8.41□□□□□ -1.06
CCDC88B-209ENST00000494080 TPRXLQ17RH7 258 aa8.35□□□□□ -1.07
CCDC88B-209ENST00000494080 KRTAP3-1Q9BYR8 98 aa8.29□□□□□ -1.08
CCDC88B-209ENST00000494080 KRTAP12-2P59991 146 aa8.18□□□□□ -1.1
CCDC88B-209ENST00000494080 DNAH9Q9NYC9 4486 aa8.15□□□□□ -1.1
CCDC88B-209ENST00000494080 TNP1P09430 55 aa8.12□□□□□ -1.11
CCDC88B-209ENST00000494080 DNHD1Q96M86 4753 aa8.11□□□□□ -1.11
CCDC88B-209ENST00000494080 KRTAP13-4Q3LI77 160 aa8.1□□□□□ -1.11
CCDC88B-209ENST00000494080 PLECQ15149 4684 aaKnown RBP8.06□□□□□ -1.12
CCDC88B-209ENST00000494080 PP632Q6XCG6 107 aa8.06□□□□□ -1.12
CCDC88B-209ENST00000494080 KRTAP10-6P60371 365 aaPredicted RBP8.05□□□□□ -1.12
CCDC88B-209ENST00000494080 KRTAP12-1P59990 96 aa8.05□□□□□ -1.12
CCDC88B-209ENST00000494080 KRTAP10-4P60372 401 aaPredicted RBP7.98□□□□□ -1.13
CCDC88B-209ENST00000494080 KRTAP15-1Q3LI76 137 aa7.97□□□□□ -1.13
CCDC88B-209ENST00000494080 DNAH10Q8IVF4 4471 aa7.96□□□□□ -1.13
CCDC88B-209ENST00000494080 MT1HL1P0DM35 61 aa7.94□□□□□ -1.14
CCDC88B-209ENST00000494080 DNAH11Q96DT5 4516 aa7.93□□□□□ -1.14
CCDC88B-209ENST00000494080 DNAH1Q9P2D7 4330 aa7.91□□□□□ -1.14
CCDC88B-209ENST00000494080 DNAH5Q8TE73 4624 aa7.9□□□□□ -1.14
CCDC88B-209ENST00000494080 KRTAP10-10P60014 251 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms