RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 ITPR1Q14643 2758 aa-2.03□□□□□ -2.73
SMC4-223ENST00000493695 DEFB131BA0A096LNP1 70 aa-2.03□□□□□ -2.73
SMC4-223ENST00000493695 NREPQ16612 68 aa-2.03□□□□□ -2.73
SMC4-223ENST00000493695 RNF17Q9BXT8 1623 aaKnown RBP-2.03□□□□□ -2.73
SMC4-223ENST00000493695 TJP1Q07157 1748 aa-2.04□□□□□ -2.74
SMC4-223ENST00000493695 ATP5EP2Q5VTU8 51 aa-2.04□□□□□ -2.74
SMC4-223ENST00000493695 RICTORQ6R327 1708 aa-2.04□□□□□ -2.74
SMC4-223ENST00000493695 USP9XQ93008 2570 aaPredicted RBP-2.04□□□□□ -2.74
SMC4-223ENST00000493695 ANKRD36CQ5JPF3 1778 aa-2.05□□□□□ -2.74
SMC4-223ENST00000493695 DYNC1H1Q14204 4646 aaKnown RBP-2.05□□□□□ -2.74
SMC4-223ENST00000493695 KANTRA0A1W2PQU2 76 aa-2.05□□□□□ -2.74
SMC4-223ENST00000493695 HMGA1P17096 107 aaKnown RBP-2.06□□□□□ -2.74
SMC4-223ENST00000493695 RIF1Q5UIP0 2472 aaKnown RBP-2.06□□□□□ -2.74
SMC4-223ENST00000493695 ITSN2Q9NZM3 1697 aa-2.06□□□□□ -2.74
SMC4-223ENST00000493695 BPTFQ12830 3046 aa-2.07□□□□□ -2.74
SMC4-223ENST00000493695 DEFB1P60022 68 aa-2.07□□□□□ -2.74
SMC4-223ENST00000493695 DEFB121Q5J5C9 76 aa-2.07□□□□□ -2.74
SMC4-223ENST00000493695 UACAQ9BZF9 1416 aa-2.08□□□□□ -2.74
SMC4-223ENST00000493695 COL12A1Q99715 3063 aa-2.08□□□□□ -2.74
SMC4-223ENST00000493695 KIAA0586Q9BVV6 1533 aa-2.09□□□□□ -2.74
SMC4-223ENST00000493695 PARP4Q9UKK3 1724 aaKnown RBP-2.11□□□□□ -2.75
SMC4-223ENST00000493695 TOGARAM1Q9Y4F4 1720 aa-2.11□□□□□ -2.75
SMC4-223ENST00000493695 KCNQ1DNQ9H478 68 aa-2.12□□□□□ -2.75
SMC4-223ENST00000493695 KDM5DQ9BY66 1539 aa-2.12□□□□□ -2.75
SMC4-223ENST00000493695 MRPL33O75394 65 aaKnown RBP-2.13□□□□□ -2.75
SMC4-223ENST00000493695 ARHGAP35Q9NRY4 1499 aa-2.14□□□□□ -2.75
SMC4-223ENST00000493695 CSMD1Q96PZ7 3565 aa-2.14□□□□□ -2.75
SMC4-223ENST00000493695 INO80Q9ULG1 1556 aaPredicted RBP-2.14□□□□□ -2.75
SMC4-223ENST00000493695 EIF2AK4Q9P2K8 1649 aaKnown RBP-2.15□□□□□ -2.75
SMC4-223ENST00000493695 WT1-ASQ06250 92 aa-2.15□□□□□ -2.75
SMC4-223ENST00000493695 SMIM13P0DJ93 91 aa-2.16□□□□□ -2.76
SMC4-223ENST00000493695 CD163L1Q9NR16 1453 aa-2.16□□□□□ -2.76
SMC4-223ENST00000493695 SRCAPQ6ZRS2 3230 aa-2.16□□□□□ -2.76
SMC4-223ENST00000493695 CHD7Q9P2D1 2997 aa-2.16□□□□□ -2.76
SMC4-223ENST00000493695 HFM1A2PYH4 1435 aa-2.17□□□□□ -2.76
SMC4-223ENST00000493695 A0A087WXM4 84 aa-2.17□□□□□ -2.76
SMC4-223ENST00000493695 CRIP1P50238 77 aa-2.17□□□□□ -2.76
SMC4-223ENST00000493695 CELSR3Q9NYQ7 3312 aa-2.17□□□□□ -2.76
SMC4-223ENST00000493695 KIF1AQ12756 1690 aa-2.18□□□□□ -2.76
SMC4-223ENST00000493695 SMR3BP02814 79 aaPredicted RBP-2.18□□□□□ -2.76
SMC4-223ENST00000493695 ST20Q9HBF5 79 aa-2.18□□□□□ -2.76
SMC4-223ENST00000493695 DNAH17Q9UFH2 4485 aa-2.19□□□□□ -2.76
SMC4-223ENST00000493695 RALGAPBQ86X10 1494 aa-2.2□□□□□ -2.76
SMC4-223ENST00000493695 TIMM8BQ9Y5J9 83 aaPredicted RBP-2.2□□□□□ -2.76
SMC4-223ENST00000493695 NRAPQ86VF7 1730 aa-2.2□□□□□ -2.76
SMC4-223ENST00000493695 NHSQ6T4R5 1651 aa-2.21□□□□□ -2.76
SMC4-223ENST00000493695 DCAF1Q9Y4B6 1507 aa-2.22□□□□□ -2.76
SMC4-223ENST00000493695 IGLV5-48A0A075B6I7 105 aa-2.22□□□□□ -2.76
SMC4-223ENST00000493695 RPS27P42677 84 aaKnown RBP-2.22□□□□□ -2.76
SMC4-223ENST00000493695 MT1XP80297 61 aa-2.22□□□□□ -2.76
SMC4-223ENST00000493695 RPS27LQ71UM5 84 aaKnown RBP-2.22□□□□□ -2.76
SMC4-223ENST00000493695 UBL5Q9BZL1 73 aa-2.22□□□□□ -2.76
SMC4-223ENST00000493695 ABCC1P33527 1531 aa-2.22□□□□□ -2.77
SMC4-223ENST00000493695 LRBAP50851 2863 aa-2.23□□□□□ -2.77
SMC4-223ENST00000493695 MMP24-AS1A0A0U1RRL7 71 aa-2.23□□□□□ -2.77
SMC4-223ENST00000493695 MED14O60244 1454 aa-2.23□□□□□ -2.77
SMC4-223ENST00000493695 ADIRFQ15847 76 aa-2.24□□□□□ -2.77
SMC4-223ENST00000493695 KRTAP8-1Q8IUC2 63 aa-2.24□□□□□ -2.77
SMC4-223ENST00000493695 CFAP74Q9C0B2 1584 aa-2.24□□□□□ -2.77
SMC4-223ENST00000493695 TNP1P09430 55 aa-2.25□□□□□ -2.77
SMC4-223ENST00000493695 H3BUT2 72 aa-2.26□□□□□ -2.77
SMC4-223ENST00000493695 CLPSL2Q6UWE3 100 aa-2.26□□□□□ -2.77
SMC4-223ENST00000493695 CDC42BPAQ5VT25 1732 aa-2.27□□□□□ -2.77
SMC4-223ENST00000493695 LRRIQ1Q96JM4 1722 aa-2.27□□□□□ -2.77
SMC4-223ENST00000493695 CEP295Q9C0D2 2601 aa-2.28□□□□□ -2.77
SMC4-223ENST00000493695 LY75O60449 1722 aa-2.28□□□□□ -2.78
SMC4-223ENST00000493695 BVES-AS1Q5T3Y7 98 aa-2.29□□□□□ -2.78
SMC4-223ENST00000493695 ERVK-7P63135 1459 aa-2.29□□□□□ -2.78
SMC4-223ENST00000493695 S100A13Q99584 98 aa-2.3□□□□□ -2.78
SMC4-223ENST00000493695 LMTK2Q8IWU2 1503 aa-2.31□□□□□ -2.78
SMC4-223ENST00000493695 MYO9AB2RTY4 2548 aa-2.31□□□□□ -2.78
SMC4-223ENST00000493695 MINOS1Q5TGZ0 78 aa-2.31□□□□□ -2.78
SMC4-223ENST00000493695 RB1CC1Q8TDY2 1594 aa-2.32□□□□□ -2.78
SMC4-223ENST00000493695 ETDCA0A1B0GVM5 59 aa-2.33□□□□□ -2.78
SMC4-223ENST00000493695 MT1EP04732 61 aa-2.33□□□□□ -2.78
SMC4-223ENST00000493695 GNG2P59768 71 aa-2.33□□□□□ -2.78
SMC4-223ENST00000493695 ENHOQ6UWT2 76 aa-2.33□□□□□ -2.78
SMC4-223ENST00000493695 TRRAPQ9Y4A5 3859 aa-2.33□□□□□ -2.78
SMC4-223ENST00000493695 SPTAN1Q13813 2472 aaKnown RBP-2.33□□□□□ -2.78
SMC4-223ENST00000493695 DNAH10Q8IVF4 4471 aa-2.34□□□□□ -2.78
SMC4-223ENST00000493695 ADGRG4Q8IZF6 3080 aa-2.34□□□□□ -2.78
SMC4-223ENST00000493695 MGAQ8IWI9 3026 aa-2.35□□□□□ -2.79
SMC4-223ENST00000493695 H3BUA1 57 aa-2.37□□□□□ -2.79
SMC4-223ENST00000493695 MYO5CQ9NQX4 1742 aa-2.37□□□□□ -2.79
SMC4-223ENST00000493695 NCBP2-AS2Q69YL0 99 aa-2.38□□□□□ -2.79
SMC4-223ENST00000493695 ANKARQ7Z5J8 1434 aa-2.38□□□□□ -2.79
SMC4-223ENST00000493695 C18orf32Q8TCD1 76 aa-2.38□□□□□ -2.79
SMC4-223ENST00000493695 SMG1Q96Q15 3661 aaKnown RBP-2.38□□□□□ -2.79
SMC4-223ENST00000493695 EYSQ5T1H1 3165 aa-2.39□□□□□ -2.79
SMC4-223ENST00000493695 C6orf48Q9UBA6 75 aa-2.39□□□□□ -2.79
SMC4-223ENST00000493695 DNAH5Q8TE73 4624 aa-2.39□□□□□ -2.79
SMC4-223ENST00000493695 COL6A5A8TX70 2615 aa-2.39□□□□□ -2.79
SMC4-223ENST00000493695 ABCA8O94911 1581 aa-2.4□□□□□ -2.79
SMC4-223ENST00000493695 DIP2AQ14689 1571 aa-2.4□□□□□ -2.79
SMC4-223ENST00000493695 MAST1Q9Y2H9 1570 aa-2.4□□□□□ -2.79
SMC4-223ENST00000493695 C3P01024 1663 aa-2.41□□□□□ -2.79
SMC4-223ENST00000493695 DEFB114Q30KQ6 69 aa-2.41□□□□□ -2.8
SMC4-223ENST00000493695 NOP10Q9NPE3 64 aaKnown RBP-2.41□□□□□ -2.8
SMC4-223ENST00000493695 CCDC18Q5T9S5 1454 aa-2.43□□□□□ -2.8
SMC4-223ENST00000493695 MT1LQ93083 61 aa-2.43□□□□□ -2.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms