RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 M0QZ58 72 aa0.58□□□□□ -2.32
HMGB1P38-201ENST00000490557 HUWE1Q7Z6Z7 4374 aaKnown RBP0.58□□□□□ -2.32
HMGB1P38-201ENST00000490557 ACACAQ13085 2346 aa0.56□□□□□ -2.32
HMGB1P38-201ENST00000490557 IGSF10Q6WRI0 2623 aa0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 TNP1P09430 55 aa0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 POLR2KP53803 58 aaKnown RBP0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 PRKDCP78527 4128 aaKnown RBP0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 LRP1Q07954 4544 aaKnown RBP0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 MTORP42345 2549 aa0.55□□□□□ -2.32
HMGB1P38-201ENST00000490557 SPRR2BP35325 72 aa0.54□□□□□ -2.32
HMGB1P38-201ENST00000490557 DUOX1Q9NRD9 1551 aa0.53□□□□□ -2.32
HMGB1P38-201ENST00000490557 CACNA1AO00555 2505 aa0.53□□□□□ -2.32
HMGB1P38-201ENST00000490557 RPL39P62891 51 aaKnown RBP0.53□□□□□ -2.32
HMGB1P38-201ENST00000490557 CLPSL2Q6UWE3 100 aa0.53□□□□□ -2.32
HMGB1P38-201ENST00000490557 MROH2BQ7Z745 1585 aa0.53□□□□□ -2.33
HMGB1P38-201ENST00000490557 DMBT1Q9UGM3 2413 aaPredicted RBP0.53□□□□□ -2.33
HMGB1P38-201ENST00000490557 DEFB110Q30KQ9 67 aa0.52□□□□□ -2.33
HMGB1P38-201ENST00000490557 MYCBP2O75592 4640 aa0.51□□□□□ -2.33
HMGB1P38-201ENST00000490557 SRRM2Q9UQ35 2752 aaKnown RBP0.51□□□□□ -2.33
HMGB1P38-201ENST00000490557 NF1P21359 2839 aa0.51□□□□□ -2.33
HMGB1P38-201ENST00000490557 FLNBO75369 2602 aaKnown RBP0.51□□□□□ -2.33
HMGB1P38-201ENST00000490557 SPTBN4Q9H254 2564 aa0.5□□□□□ -2.33
HMGB1P38-201ENST00000490557 SPG11Q96JI7 2443 aa0.5□□□□□ -2.33
HMGB1P38-201ENST00000490557 RIF1Q5UIP0 2472 aaKnown RBP0.49□□□□□ -2.33
HMGB1P38-201ENST00000490557 HRNRQ86YZ3 2850 aaPredicted RBP0.49□□□□□ -2.33
HMGB1P38-201ENST00000490557 NSD1Q96L73 2696 aaPredicted RBP0.48□□□□□ -2.33
HMGB1P38-201ENST00000490557 PHGR1C9JFL3 82 aa0.48□□□□□ -2.33
HMGB1P38-201ENST00000490557 LPAP08519 4548 aa0.48□□□□□ -2.33
HMGB1P38-201ENST00000490557 SONP18583 2426 aaKnown RBP0.48□□□□□ -2.33
HMGB1P38-201ENST00000490557 AHNAK2Q8IVF2 5795 aa0.47□□□□□ -2.33
HMGB1P38-201ENST00000490557 LRRK2Q5S007 2527 aa0.47□□□□□ -2.33
HMGB1P38-201ENST00000490557 RPL39LQ96EH5 51 aaKnown RBP0.47□□□□□ -2.33
HMGB1P38-201ENST00000490557 ANKHD1Q8IWZ3 2542 aaKnown RBP0.46□□□□□ -2.34
HMGB1P38-201ENST00000490557 GCN1Q92616 2671 aaKnown RBP0.46□□□□□ -2.34
HMGB1P38-201ENST00000490557 FAM186AA6NE01 2351 aa0.46□□□□□ -2.34
HMGB1P38-201ENST00000490557 SETD2Q9BYW2 2564 aaPredicted RBP0.46□□□□□ -2.34
HMGB1P38-201ENST00000490557 A0A0C4DFX4 3053 aa0.45□□□□□ -2.34
HMGB1P38-201ENST00000490557 TOMM7Q9P0U1 55 aa0.45□□□□□ -2.34
HMGB1P38-201ENST00000490557 GCC2Q8IWJ2 1684 aa0.45□□□□□ -2.34
HMGB1P38-201ENST00000490557 STAB1Q9NY15 2570 aa0.45□□□□□ -2.34
HMGB1P38-201ENST00000490557 DCHS2Q6V1P9 2916 aa0.44□□□□□ -2.34
HMGB1P38-201ENST00000490557 FLNCQ14315 2725 aa0.44□□□□□ -2.34
HMGB1P38-201ENST00000490557 SPART-AS1P0CW21 52 aa0.44□□□□□ -2.34
HMGB1P38-201ENST00000490557 EPG5Q9HCE0 2579 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 SPRR2AP35326 72 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 LYSTQ99698 3801 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 ZZEF1O43149 2961 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 KMT2AQ03164 3969 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 FAT4Q6V0I7 4981 aa0.43□□□□□ -2.34
HMGB1P38-201ENST00000490557 COL6A5A8TX70 2615 aa0.42□□□□□ -2.34
HMGB1P38-201ENST00000490557 LEAP2Q969E1 77 aa0.42□□□□□ -2.34
HMGB1P38-201ENST00000490557 UTP20O75691 2785 aaKnown RBP0.42□□□□□ -2.34
HMGB1P38-201ENST00000490557 KRTAP6-2Q3LI66 62 aa0.41□□□□□ -2.34
HMGB1P38-201ENST00000490557 FASNP49327 2511 aaKnown RBP0.41□□□□□ -2.34
HMGB1P38-201ENST00000490557 FLNAP21333 2647 aaKnown RBP0.41□□□□□ -2.34
HMGB1P38-201ENST00000490557 MUC5BQ9HC84 5762 aaPredicted RBP0.4□□□□□ -2.34
HMGB1P38-201ENST00000490557 DMXL1Q9Y485 3027 aa0.4□□□□□ -2.35
HMGB1P38-201ENST00000490557 COL7A1Q02388 2944 aa0.4□□□□□ -2.35
HMGB1P38-201ENST00000490557 TENM2Q9NT68 2774 aa0.39□□□□□ -2.35
HMGB1P38-201ENST00000490557 LRP1BQ9NZR2 4599 aa0.39□□□□□ -2.35
HMGB1P38-201ENST00000490557 ACACBO00763 2458 aa0.38□□□□□ -2.35
HMGB1P38-201ENST00000490557 MT1AP04731 61 aa0.38□□□□□ -2.35
HMGB1P38-201ENST00000490557 HMCN2Q8NDA2 5059 aa0.38□□□□□ -2.35
HMGB1P38-201ENST00000490557 CUBNO60494 3623 aa0.38□□□□□ -2.35
HMGB1P38-201ENST00000490557 AHNAKQ09666 5890 aaKnown RBP0.38□□□□□ -2.35
HMGB1P38-201ENST00000490557 PDZD2O15018 2839 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 PKD1P98161 4303 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 MAST4O15021 2626 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 HSPG2P98160 4391 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 COL6A3P12111 3177 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 HECTD4Q9Y4D8 3996 aa0.37□□□□□ -2.35
HMGB1P38-201ENST00000490557 SACSQ9NZJ4 4579 aa0.36□□□□□ -2.35
HMGB1P38-201ENST00000490557 ANKRD11Q6UB99 2663 aaPredicted RBP0.36□□□□□ -2.35
HMGB1P38-201ENST00000490557 DNAH9Q9NYC9 4486 aa0.36□□□□□ -2.35
HMGB1P38-201ENST00000490557 CCDC168Q8NDH2 2452 aa0.36□□□□□ -2.35
HMGB1P38-201ENST00000490557 ARHGAP5-AS1Q96IT6 56 aa0.36□□□□□ -2.35
HMGB1P38-201ENST00000490557 VPS13BQ7Z7G8 4022 aa0.35□□□□□ -2.35
HMGB1P38-201ENST00000490557 DNAH11Q96DT5 4516 aa0.34□□□□□ -2.35
HMGB1P38-201ENST00000490557 TACC2O95359 2948 aa0.34□□□□□ -2.36
HMGB1P38-201ENST00000490557 SPRR2EP22531 72 aa0.34□□□□□ -2.36
HMGB1P38-201ENST00000490557 COL12A1Q99715 3063 aa0.34□□□□□ -2.36
HMGB1P38-201ENST00000490557 NBEAL2Q6ZNJ1 2754 aa0.34□□□□□ -2.36
HMGB1P38-201ENST00000490557 ANK3Q12955 4377 aaKnown RBP0.34□□□□□ -2.36
HMGB1P38-201ENST00000490557 KRTAP8-1Q8IUC2 63 aa0.33□□□□□ -2.36
HMGB1P38-201ENST00000490557 RANBP2P49792 3224 aaKnown RBP0.33□□□□□ -2.36
HMGB1P38-201ENST00000490557 MYO18BQ8IUG5 2567 aa0.33□□□□□ -2.36
HMGB1P38-201ENST00000490557 LINC01590Q5TEZ4 76 aa0.32□□□□□ -2.36
HMGB1P38-201ENST00000490557 FLGP20930 4061 aaPredicted RBP0.32□□□□□ -2.36
HMGB1P38-201ENST00000490557 ZANQ9Y493 2812 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 SPRR2FQ96RM1 72 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 NBEAQ8NFP9 2946 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 DNAH2Q9P225 4427 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 TGP01266 2768 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 DNAH3Q8TD57 4116 aa0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 TEP1Q99973 2627 aaKnown RBP0.31□□□□□ -2.36
HMGB1P38-201ENST00000490557 TLN2Q9Y4G6 2542 aa0.3□□□□□ -2.36
HMGB1P38-201ENST00000490557 MGAM2Q2M2H8 2515 aa0.3□□□□□ -2.36
HMGB1P38-201ENST00000490557 STAB2Q8WWQ8 2551 aa0.29□□□□□ -2.36
HMGB1P38-201ENST00000490557 PKHD1P08F94 4074 aa0.28□□□□□ -2.36
HMGB1P38-201ENST00000490557 SVEP1Q4LDE5 3571 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms