RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 MT1BP07438 61 aa4.21□□□□□ -1.74
COL17A1-207ENST00000488320 FAM236AA0A1B0GUQ0 79 aa4.2□□□□□ -1.74
COL17A1-207ENST00000488320 FAM236BA0A1B0GV22 79 aa4.2□□□□□ -1.74
COL17A1-207ENST00000488320 FABP2P12104 132 aa4.19□□□□□ -1.74
COL17A1-207ENST00000488320 A0A1B0GVX0 72 aa4.18□□□□□ -1.74
COL17A1-207ENST00000488320 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
COL17A1-207ENST00000488320 LINC00472Q9H8W2 130 aa4.18□□□□□ -1.74
COL17A1-207ENST00000488320 TRBV7-4A0A0J9YYF1 115 aa4.17□□□□□ -1.74
COL17A1-207ENST00000488320 KRTDAPP60985 99 aa4.17□□□□□ -1.74
COL17A1-207ENST00000488320 ANKRD29Q8N6D5 301 aa4.17□□□□□ -1.74
COL17A1-207ENST00000488320 RAB37Q96AX2 223 aa4.17□□□□□ -1.74
COL17A1-207ENST00000488320 IMUPQ9GZP8 106 aa4.17□□□□□ -1.74
COL17A1-207ENST00000488320 ATOH7Q8N100 152 aa4.16□□□□□ -1.74
COL17A1-207ENST00000488320 A0A1B0GV72 72 aa4.14□□□□□ -1.75
COL17A1-207ENST00000488320 H0YGX0 51 aa4.14□□□□□ -1.75
COL17A1-207ENST00000488320 KRTAP19-8Q3LI54 63 aa4.14□□□□□ -1.75
COL17A1-207ENST00000488320 DSCR8Q96T75 97 aa4.14□□□□□ -1.75
COL17A1-207ENST00000488320 TRACP01848 142 aa4.13□□□□□ -1.75
COL17A1-207ENST00000488320 IGKV3D-7A0A0C4DH55 119 aa4.11□□□□□ -1.75
COL17A1-207ENST00000488320 CCKP06307 115 aa4.11□□□□□ -1.75
COL17A1-207ENST00000488320 SPRR2GQ9BYE4 73 aa4.1□□□□□ -1.75
COL17A1-207ENST00000488320 NDUFB1O75438 58 aa4.09□□□□□ -1.75
COL17A1-207ENST00000488320 HIST1H4GQ99525 98 aa4.09□□□□□ -1.75
COL17A1-207ENST00000488320 VPS25Q9BRG1 176 aa4.09□□□□□ -1.75
COL17A1-207ENST00000488320 HIST1H2BKO60814 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BJP06899 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 SPRR2DP22532 72 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BOP23527 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BBP33778 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BDP58876 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 SNRPEP62304 92 aaKnown RBP4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BCP62807 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST2H2BEQ16778 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 C5orf47Q569G3 176 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BHQ93079 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BNQ99877 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 HIST1H2BMQ99879 126 aa4.08□□□□□ -1.76
COL17A1-207ENST00000488320 A0A1B0GX51 115 aa4.07□□□□□ -1.76
COL17A1-207ENST00000488320 J3KT08 172 aa4.07□□□□□ -1.76
COL17A1-207ENST00000488320 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
COL17A1-207ENST00000488320 GPR98Q8WXG9 6306 aa4.05□□□□□ -1.76
COL17A1-207ENST00000488320 C8orf17Q9NRJ1 99 aa4.05□□□□□ -1.76
COL17A1-207ENST00000488320 HSBP1L1C9JCN9 74 aa4.04□□□□□ -1.76
COL17A1-207ENST00000488320 IGKV2D-30A0A075B6S6 120 aa4.03□□□□□ -1.76
COL17A1-207ENST00000488320 DNAL4O96015 105 aa4.03□□□□□ -1.76
COL17A1-207ENST00000488320 IGKV2-30P06310 120 aa4.03□□□□□ -1.76
COL17A1-207ENST00000488320 KRTAP8-1Q8IUC2 63 aa4.03□□□□□ -1.76
COL17A1-207ENST00000488320 ORMDL1Q9P0S3 153 aa4.03□□□□□ -1.76
COL17A1-207ENST00000488320 H3BQ85 93 aa4.02□□□□□ -1.77
COL17A1-207ENST00000488320 TMEM256-PLSCR3K7ERE1 68 aa4.02□□□□□ -1.77
COL17A1-207ENST00000488320 Q6ZVQ6 151 aa4.02□□□□□ -1.77
COL17A1-207ENST00000488320 C2orf91Q6ZV80 131 aa4.01□□□□□ -1.77
COL17A1-207ENST00000488320 KLKP1Q107X0 134 aa4□□□□□ -1.77
COL17A1-207ENST00000488320 CSAG1Q6PB30 78 aa4□□□□□ -1.77
COL17A1-207ENST00000488320 NDUFS5O43920 106 aa3.99□□□□□ -1.77
COL17A1-207ENST00000488320 A0A0B4J2C4 111 aa3.98□□□□□ -1.77
COL17A1-207ENST00000488320 C21orf62-AS1Q17RA5 79 aa3.98□□□□□ -1.77
COL17A1-207ENST00000488320 C4orf26Q17RF5 130 aa3.98□□□□□ -1.77
COL17A1-207ENST00000488320 C7orf65Q6ZTY9 151 aa3.98□□□□□ -1.77
COL17A1-207ENST00000488320 KRTAP3-1Q9BYR8 98 aa3.98□□□□□ -1.77
COL17A1-207ENST00000488320 RBM3P98179 157 aaKnown RBP3.97□□□□□ -1.77
COL17A1-207ENST00000488320 MRPL34Q9BQ48 92 aaKnown RBP3.97□□□□□ -1.77
COL17A1-207ENST00000488320 S4R3F8 94 aa3.97□□□□□ -1.77
COL17A1-207ENST00000488320 COA6Q5JTJ3 125 aaKnown RBP3.96□□□□□ -1.78
COL17A1-207ENST00000488320 TRIAP1O43715 76 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 UBE2V1Q13404 147 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 Q6ZQT0 140 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 PRR15Q8IV56 129 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 PRO1854Q9UHT4 67 aa3.95□□□□□ -1.78
COL17A1-207ENST00000488320 TMEM254Q8TBM7 123 aa3.94□□□□□ -1.78
COL17A1-207ENST00000488320 LCA10Q71F78 164 aa3.93□□□□□ -1.78
COL17A1-207ENST00000488320 C9JAW5 83 aa3.92□□□□□ -1.78
COL17A1-207ENST00000488320 PSMB2P49721 201 aa3.92□□□□□ -1.78
COL17A1-207ENST00000488320 COX8AP10176 69 aa3.91□□□□□ -1.78
COL17A1-207ENST00000488320 CRIPTQ9P021 101 aa3.91□□□□□ -1.78
COL17A1-207ENST00000488320 MMP24-AS1A0A0U1RRL7 71 aa3.9□□□□□ -1.79
COL17A1-207ENST00000488320 hDV103S1A0JD37 113 aa3.9□□□□□ -1.79
COL17A1-207ENST00000488320 Q5W150 140 aa3.9□□□□□ -1.79
COL17A1-207ENST00000488320 C9orf118A6NHY6 69 aa3.89□□□□□ -1.79
COL17A1-207ENST00000488320 COX6CP09669 75 aa3.89□□□□□ -1.79
COL17A1-207ENST00000488320 DLEU1O43261 78 aa3.88□□□□□ -1.79
COL17A1-207ENST00000488320 S100A2P29034 98 aa3.88□□□□□ -1.79
COL17A1-207ENST00000488320 CEND1Q8N111 149 aa3.87□□□□□ -1.79
COL17A1-207ENST00000488320 C14orf144Q96I85 54 aa3.87□□□□□ -1.79
COL17A1-207ENST00000488320 HIST3H2BBQ8N257 126 aa3.86□□□□□ -1.79
COL17A1-207ENST00000488320 C1orf64Q8NEQ6 169 aa3.86□□□□□ -1.79
COL17A1-207ENST00000488320 HIGD1BQ9P298 99 aa3.86□□□□□ -1.79
COL17A1-207ENST00000488320 TMA7Q9Y2S6 64 aaKnown RBP3.86□□□□□ -1.79
COL17A1-207ENST00000488320 K7EQZ3 153 aa3.85□□□□□ -1.79
COL17A1-207ENST00000488320 MT1XP80297 61 aa3.85□□□□□ -1.79
COL17A1-207ENST00000488320 NREPQ16612 68 aa3.85□□□□□ -1.79
COL17A1-207ENST00000488320 DSTQ03001 7570 aaKnown RBP3.84□□□□□ -1.79
COL17A1-207ENST00000488320 KRTAP12-2P59991 146 aa3.84□□□□□ -1.79
COL17A1-207ENST00000488320 A0A1B0GW54 56 aa3.83□□□□□ -1.8
COL17A1-207ENST00000488320 BAALC-AS2P0C853 105 aa3.83□□□□□ -1.8
COL17A1-207ENST00000488320 FXYD2P54710 66 aa3.83□□□□□ -1.8
COL17A1-207ENST00000488320 PLAC4Q8WY50 150 aa3.83□□□□□ -1.8
COL17A1-207ENST00000488320 HIST1H2BLQ99880 126 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms