RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 WNK2Q9Y3S1 2297 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 DNAH12Q6ZR08 3092 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 IGLV5-48A0A075B6I7 105 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 GVQW2A0A096LPI5 108 aaPredicted RBP0.41□□□□□ -2.34
SMC4-220ENST00000488017 A8MTW9 85 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 M0QY20 66 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 INE1O15225 51 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 PRCDQ00LT1 54 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 WT1-ASQ06250 92 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 DEFB104AQ8WTQ1 72 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 LRBAP50851 2863 aa0.41□□□□□ -2.34
SMC4-220ENST00000488017 CHD9Q3L8U1 2897 aa0.4□□□□□ -2.34
SMC4-220ENST00000488017 PKDREJQ9NTG1 2253 aa0.4□□□□□ -2.34
SMC4-220ENST00000488017 SPTBN1Q01082 2364 aaKnown RBP0.4□□□□□ -2.34
SMC4-220ENST00000488017 DNAH9Q9NYC9 4486 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 AKAP13Q12802 2813 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 MEGF8Q7Z7M0 2845 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 SPTBN4Q9H254 2564 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 DMXL2Q8TDJ6 3036 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 CACNA1EQ15878 2313 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 MMP24-AS1A0A0U1RRL7 71 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 COX17Q14061 63 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 SSBP3-AS1Q7Z2R9 100 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 PKHD1P08F94 4074 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 TRANK1O15050 2925 aa0.4□□□□□ -2.35
SMC4-220ENST00000488017 CSPG4Q6UVK1 2322 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 LRP1Q07954 4544 aaKnown RBP0.39□□□□□ -2.35
SMC4-220ENST00000488017 K7EIL1 84 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 K7EIM0 57 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 ACYP2P14621 99 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 RPL39P5Q59GN2 51 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 CLPSL2Q6UWE3 100 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 WFDC13Q8IUB5 93 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 DEFB123Q8N688 67 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 PLAC4Q8WY50 150 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 ADGRG4Q8IZF6 3080 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 ACACAQ13085 2346 aa0.39□□□□□ -2.35
SMC4-220ENST00000488017 FAT1Q14517 4588 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 NF1P21359 2839 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 KMT2DO14686 5537 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 EYSQ5T1H1 3165 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 STATHP02808 62 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 DEFB130BP0DP73 79 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 DEFB130AP0DP74 79 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 H1FX-AS1Q4G0G2 97 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 C10orf99Q6UWK7 81 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 TMEM167AQ8TBQ9 72 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 MRPL34Q9BQ48 92 aaKnown RBP0.38□□□□□ -2.35
SMC4-220ENST00000488017 C6orf48Q9UBA6 75 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 KAAG1Q9UBP8 84 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 FAM208BQ5VWN6 2430 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 DYNC1H1Q14204 4646 aaKnown RBP0.38□□□□□ -2.35
SMC4-220ENST00000488017 SRRM2Q9UQ35 2752 aaKnown RBP0.38□□□□□ -2.35
SMC4-220ENST00000488017 SPTBN2O15020 2390 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 WNK1Q9H4A3 2382 aa0.38□□□□□ -2.35
SMC4-220ENST00000488017 COL6A5A8TX70 2615 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 HERC1Q15751 4861 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 AKAP6Q13023 2319 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 SPTY2D1-AS1A0A0U1RR47 76 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 DEFB108AA8MXU0 73 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 MRPL33O75394 65 aaKnown RBP0.37□□□□□ -2.35
SMC4-220ENST00000488017 DEFB1P60022 68 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 RPL37P61927 97 aaKnown RBP0.37□□□□□ -2.35
SMC4-220ENST00000488017 KLK9Q2XQG4 91 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 MINOS1Q5TGZ0 78 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 WFDC10BQ8IUB3 73 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 C4orf3Q8WVX3 66 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 TP53AIP1Q9HCN2 124 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 ZNF462Q96JM2 2506 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 TNXBP22105 4242 aa0.37□□□□□ -2.35
SMC4-220ENST00000488017 STARD9Q9P2P6 4700 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 CCDC168Q8NDH2 2452 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 SPRR1BP22528 89 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 SPRR1AP35321 89 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 COX6B2Q6YFQ2 88 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 COX14Q96I36 57 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 TPRP12270 2363 aaKnown RBP0.36□□□□□ -2.35
SMC4-220ENST00000488017 ITPR1Q14643 2758 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 COL7A1Q02388 2944 aa0.36□□□□□ -2.35
SMC4-220ENST00000488017 JMJD1CQ15652 2540 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 EP300Q09472 2414 aaPredicted RBP0.35□□□□□ -2.35
SMC4-220ENST00000488017 APELAP0DMC3 54 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 TOMM7Q9P0U1 55 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 S4R3F8 94 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 C2CD3Q4AC94 2353 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 TACC2O95359 2948 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 TTC28Q96AY4 2481 aa0.35□□□□□ -2.35
SMC4-220ENST00000488017 F8P00451 2351 aa0.34□□□□□ -2.35
SMC4-220ENST00000488017 ITPR3Q14573 2671 aa0.34□□□□□ -2.35
SMC4-220ENST00000488017 SPTA1P02549 2419 aa0.34□□□□□ -2.35
SMC4-220ENST00000488017 H0YGG7 62 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 DEFB109BQ30KR1 87 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 NAV2Q8IVL1 2488 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 MAP1AP78559 2803 aaPredicted RBP0.34□□□□□ -2.36
SMC4-220ENST00000488017 NCOR2Q9Y618 2525 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 LRP1BQ9NZR2 4599 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 ZNF292O60281 2723 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 NCOR1O75376 2440 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 ABCA2Q9BZC7 2435 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms