RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 PLAC8Q9NZF1 115 aa6.66□□□□□ -1.34
COL27A1-204ENST00000477421 A0A1B0GU69 56 aa6.64□□□□□ -1.35
COL27A1-204ENST00000477421 ANK3Q12955 4377 aaKnown RBP6.63□□□□□ -1.35
COL27A1-204ENST00000477421 SEC61BP60468 96 aaKnown RBP6.63□□□□□ -1.35
COL27A1-204ENST00000477421 Q6ZRN7 208 aaPredicted RBP6.62□□□□□ -1.35
COL27A1-204ENST00000477421 LINC00304Q8N9R0 145 aa6.62□□□□□ -1.35
COL27A1-204ENST00000477421 Q8N9P0 234 aaPredicted RBP6.59□□□□□ -1.35
COL27A1-204ENST00000477421 KRTAP10-1P60331 282 aa6.59□□□□□ -1.35
COL27A1-204ENST00000477421 A0A087X002 238 aa6.58□□□□□ -1.36
COL27A1-204ENST00000477421 NOTCH2NLQ7Z3S9 236 aa6.58□□□□□ -1.36
COL27A1-204ENST00000477421 Q6ZR54 194 aa6.58□□□□□ -1.36
COL27A1-204ENST00000477421 SPANXA2-OT1Q8N9U9 137 aa6.58□□□□□ -1.36
COL27A1-204ENST00000477421 Q8N1X5 172 aa6.57□□□□□ -1.36
COL27A1-204ENST00000477421 KTN1-AS1Q86SY8 53 aa6.57□□□□□ -1.36
COL27A1-204ENST00000477421 FBN3Q75N90 2809 aa6.56□□□□□ -1.36
COL27A1-204ENST00000477421 CYP4F30PQ9H0H9 118 aa6.55□□□□□ -1.36
COL27A1-204ENST00000477421 KRTAP29-1A8MX34 341 aaPredicted RBP6.55□□□□□ -1.36
COL27A1-204ENST00000477421 IGLV7-46A0A075B6I9 117 aa6.53□□□□□ -1.36
COL27A1-204ENST00000477421 ATP11AUNQ6ZP68 121 aa6.53□□□□□ -1.36
COL27A1-204ENST00000477421 HRES1P13985 223 aa6.52□□□□□ -1.37
COL27A1-204ENST00000477421 COL7A1Q02388 2944 aa6.5□□□□□ -1.37
COL27A1-204ENST00000477421 K7ERS5 55 aa6.5□□□□□ -1.37
COL27A1-204ENST00000477421 Q1T7F1 81 aa6.5□□□□□ -1.37
COL27A1-204ENST00000477421 LINC00483Q53H64 154 aa6.49□□□□□ -1.37
COL27A1-204ENST00000477421 ZCCHC13Q8WW36 166 aaKnown RBP6.48□□□□□ -1.37
COL27A1-204ENST00000477421 CSMD3Q7Z407 3707 aa6.47□□□□□ -1.37
COL27A1-204ENST00000477421 KRTAP13-1Q8IUC0 172 aa6.47□□□□□ -1.37
COL27A1-204ENST00000477421 Q5W150 140 aa6.46□□□□□ -1.38
COL27A1-204ENST00000477421 LCA10Q71F78 164 aa6.43□□□□□ -1.38
COL27A1-204ENST00000477421 UQCR11O14957 56 aa6.42□□□□□ -1.38
COL27A1-204ENST00000477421 Q5VV11 94 aa6.42□□□□□ -1.38
COL27A1-204ENST00000477421 MEGF8Q7Z7M0 2845 aa6.41□□□□□ -1.38
COL27A1-204ENST00000477421 MIR22HGQ0VDD5 57 aa6.39□□□□□ -1.39
COL27A1-204ENST00000477421 LCE6AA0A183 80 aa6.38□□□□□ -1.39
COL27A1-204ENST00000477421 KRTAP13-2Q52LG2 175 aa6.37□□□□□ -1.39
COL27A1-204ENST00000477421 AKAP9Q99996 3911 aa6.37□□□□□ -1.39
COL27A1-204ENST00000477421 SPINK7P58062 85 aa6.37□□□□□ -1.39
COL27A1-204ENST00000477421 CDC42SE1Q9NRR8 79 aa6.34□□□□□ -1.39
COL27A1-204ENST00000477421 A8MU10 97 aa6.33□□□□□ -1.4
COL27A1-204ENST00000477421 LINC01558Q9Y6Z2 57 aa6.33□□□□□ -1.4
COL27A1-204ENST00000477421 LINC01554Q52M75 96 aa6.31□□□□□ -1.4
COL27A1-204ENST00000477421 PRAC1Q96KF2 57 aa6.29□□□□□ -1.4
COL27A1-204ENST00000477421 A0A0D9SG42 100 aa6.26□□□□□ -1.41
COL27A1-204ENST00000477421 DMAC1Q96GE9 116 aa6.25□□□□□ -1.41
COL27A1-204ENST00000477421 Q5VSD8 79 aa6.22□□□□□ -1.41
COL27A1-204ENST00000477421 A0A1B0GU33 70 aa6.18□□□□□ -1.42
COL27A1-204ENST00000477421 ASB16-AS1Q495Z4 193 aa6.18□□□□□ -1.42
COL27A1-204ENST00000477421 KRTAP1-4P0C5Y4 121 aa6.17□□□□□ -1.42
COL27A1-204ENST00000477421 Q6ZSA8 131 aa6.17□□□□□ -1.42
COL27A1-204ENST00000477421 KRTAP16-1A8MUX0 517 aa6.16□□□□□ -1.42
COL27A1-204ENST00000477421 ADM2Q7Z4H4 148 aa6.13□□□□□ -1.43
COL27A1-204ENST00000477421 SPINT4Q6UDR6 99 aa6.12□□□□□ -1.43
COL27A1-204ENST00000477421 CRIPTQ9P021 101 aa6.11□□□□□ -1.43
COL27A1-204ENST00000477421 COX6B2Q6YFQ2 88 aa6.1□□□□□ -1.43
COL27A1-204ENST00000477421 HUWE1Q7Z6Z7 4374 aaKnown RBP6.08□□□□□ -1.44
COL27A1-204ENST00000477421 SPATA8Q6RVD6 105 aa6.08□□□□□ -1.44
COL27A1-204ENST00000477421 A6NN06 94 aa6.05□□□□□ -1.44
COL27A1-204ENST00000477421 KRTAP3-3Q9BYR6 98 aa6.02□□□□□ -1.45
COL27A1-204ENST00000477421 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
COL27A1-204ENST00000477421 CSAG1Q6PB30 78 aa6.02□□□□□ -1.45
COL27A1-204ENST00000477421 S4R3F8 94 aa6.02□□□□□ -1.45
COL27A1-204ENST00000477421 LUZP6Q538Z0 58 aa6□□□□□ -1.45
COL27A1-204ENST00000477421 RPS29P62273 56 aaKnown RBP5.99□□□□□ -1.45
COL27A1-204ENST00000477421 H1FX-AS1Q4G0G2 97 aa5.96□□□□□ -1.45
COL27A1-204ENST00000477421 KRTAP21-3Q3LHN1 58 aa5.96□□□□□ -1.46
COL27A1-204ENST00000477421 DNAH10Q8IVF4 4471 aa5.95□□□□□ -1.46
COL27A1-204ENST00000477421 A8MUU9 505 aa5.94□□□□□ -1.46
COL27A1-204ENST00000477421 KRTAP13-3Q3SY46 172 aa5.93□□□□□ -1.46
COL27A1-204ENST00000477421 C20orf166-AS1Q96NR2 134 aa5.92□□□□□ -1.46
COL27A1-204ENST00000477421 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
COL27A1-204ENST00000477421 DNAH9Q9NYC9 4486 aa5.88□□□□□ -1.47
COL27A1-204ENST00000477421 DNHD1Q96M86 4753 aa5.88□□□□□ -1.47
COL27A1-204ENST00000477421 RPL37P61927 97 aaKnown RBP5.88□□□□□ -1.47
COL27A1-204ENST00000477421 PLECQ15149 4684 aaKnown RBP5.88□□□□□ -1.47
COL27A1-204ENST00000477421 ANK2Q01484 3957 aa5.88□□□□□ -1.47
COL27A1-204ENST00000477421 R4GN34 69 aa5.86□□□□□ -1.47
COL27A1-204ENST00000477421 XP32Q5T750 250 aa5.82□□□□□ -1.48
COL27A1-204ENST00000477421 A0A1B0GVY2 172 aa5.81□□□□□ -1.48
COL27A1-204ENST00000477421 M0QZ58 72 aa5.81□□□□□ -1.48
COL27A1-204ENST00000477421 CAMK2N1Q7Z7J9 78 aa5.8□□□□□ -1.48
COL27A1-204ENST00000477421 ROMO1P60602 79 aa5.8□□□□□ -1.48
COL27A1-204ENST00000477421 DNAH11Q96DT5 4516 aa5.78□□□□□ -1.48
COL27A1-204ENST00000477421 M0R2T5 61 aa5.76□□□□□ -1.49
COL27A1-204ENST00000477421 H0YAA0 97 aa5.76□□□□□ -1.49
COL27A1-204ENST00000477421 PRKDCP78527 4128 aaKnown RBP5.75□□□□□ -1.49
COL27A1-204ENST00000477421 STARD9Q9P2P6 4700 aa5.75□□□□□ -1.49
COL27A1-204ENST00000477421 DNAH1Q9P2D7 4330 aa5.74□□□□□ -1.49
COL27A1-204ENST00000477421 LYSTQ99698 3801 aa5.73□□□□□ -1.49
COL27A1-204ENST00000477421 KRTAP10-8P60410 259 aa5.7□□□□□ -1.5
COL27A1-204ENST00000477421 KRTAP3-1Q9BYR8 98 aa5.68□□□□□ -1.5
COL27A1-204ENST00000477421 P0C880 135 aa5.67□□□□□ -1.5
COL27A1-204ENST00000477421 KMT2AQ03164 3969 aa5.66□□□□□ -1.5
COL27A1-204ENST00000477421 KRTAP25-1Q3LHN0 102 aa5.65□□□□□ -1.5
COL27A1-204ENST00000477421 LCE2DQ5TA82 110 aaPredicted RBP5.64□□□□□ -1.51
COL27A1-204ENST00000477421 DNAH5Q8TE73 4624 aa5.64□□□□□ -1.51
COL27A1-204ENST00000477421 FAT1Q14517 4588 aa5.63□□□□□ -1.51
COL27A1-204ENST00000477421 LRP1BQ9NZR2 4599 aa5.6□□□□□ -1.51
COL27A1-204ENST00000477421 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
COL27A1-204ENST00000477421 VPS13DQ5THJ4 4388 aa5.59□□□□□ -1.51
COL27A1-204ENST00000477421 DNAH8Q96JB1 4490 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 176.4 ms