RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 PP632Q6XCG6 107 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 POLQO75417 2590 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 SPRR1AP35321 89 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 MAP1AP78559 2803 aaPredicted RBP1.66□□□□□ -2.14
UBR3-208ENST00000474426 AKAP6Q13023 2319 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 ROS1P08922 2347 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 PRLHP81277 87 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
UBR3-208ENST00000474426 EPG5Q9HCE0 2579 aa1.65□□□□□ -2.14
UBR3-208ENST00000474426 RIF1Q5UIP0 2472 aaKnown RBP1.65□□□□□ -2.14
UBR3-208ENST00000474426 CCDC168Q8NDH2 2452 aa1.65□□□□□ -2.14
UBR3-208ENST00000474426 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.14
UBR3-208ENST00000474426 VPS13CQ709C8 3753 aa1.65□□□□□ -2.14
UBR3-208ENST00000474426 IGKV2D-30A0A075B6S6 120 aa1.65□□□□□ -2.14
UBR3-208ENST00000474426 FLNCQ14315 2725 aa1.65□□□□□ -2.15
UBR3-208ENST00000474426 SETD2Q9BYW2 2564 aaPredicted RBP1.65□□□□□ -2.15
UBR3-208ENST00000474426 MEGF8Q7Z7M0 2845 aa1.65□□□□□ -2.15
UBR3-208ENST00000474426 IGSF10Q6WRI0 2623 aa1.65□□□□□ -2.15
UBR3-208ENST00000474426 HRNRQ86YZ3 2850 aaPredicted RBP1.64□□□□□ -2.15
UBR3-208ENST00000474426 DEFB103AP81534 67 aa1.64□□□□□ -2.15
UBR3-208ENST00000474426 KRTAP2-2Q9BYT5 123 aa1.64□□□□□ -2.15
UBR3-208ENST00000474426 DMBT1Q9UGM3 2413 aaPredicted RBP1.64□□□□□ -2.15
UBR3-208ENST00000474426 MXRA5Q9NR99 2828 aa1.64□□□□□ -2.15
UBR3-208ENST00000474426 KRTAP10-6P60371 365 aaPredicted RBP1.64□□□□□ -2.15
UBR3-208ENST00000474426 USMG5Q96IX5 58 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 VPS13DQ5THJ4 4388 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 ANK2Q01484 3957 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 KRTAP10-11P60412 298 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 APLNQ9ULZ1 77 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 A0A1B0GVY2 172 aa1.63□□□□□ -2.15
UBR3-208ENST00000474426 HTN1P15515 57 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 DEFB108BQ8NET1 73 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 SPINK1P00995 79 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 ABCA2Q9BZC7 2435 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 SPRR1BP22528 89 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 RHPN1-AS1Q9BWJ2 59 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 HIVEP2P31629 2446 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 NOTCH3Q9UM47 2321 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 FRAS1Q86XX4 4008 aa1.62□□□□□ -2.15
UBR3-208ENST00000474426 S4R3F8 94 aa1.61□□□□□ -2.15
UBR3-208ENST00000474426 USP9YO00507 2555 aaPredicted RBP1.61□□□□□ -2.15
UBR3-208ENST00000474426 PKD1L1Q8TDX9 2849 aa1.61□□□□□ -2.15
UBR3-208ENST00000474426 MAP1BP46821 2468 aaKnown RBP1.61□□□□□ -2.15
UBR3-208ENST00000474426 KRTAP13-4Q3LI77 160 aa1.61□□□□□ -2.15
UBR3-208ENST00000474426 HELZ2Q9BYK8 2649 aaKnown RBP1.6□□□□□ -2.15
UBR3-208ENST00000474426 MYO18BQ8IUG5 2567 aa1.6□□□□□ -2.15
UBR3-208ENST00000474426 MYCBP2O75592 4640 aa1.6□□□□□ -2.15
UBR3-208ENST00000474426 LCE5AQ5TCM9 118 aa1.6□□□□□ -2.15
UBR3-208ENST00000474426 CFAP46Q8IYW2 2715 aa1.6□□□□□ -2.15
UBR3-208ENST00000474426 ZNF469Q96JG9 3925 aaPredicted RBP1.59□□□□□ -2.15
UBR3-208ENST00000474426 HIVEP1P15822 2718 aa1.59□□□□□ -2.15
UBR3-208ENST00000474426 ZANQ9Y493 2812 aa1.59□□□□□ -2.15
UBR3-208ENST00000474426 COL7A1Q02388 2944 aa1.59□□□□□ -2.15
UBR3-208ENST00000474426 DNAH11Q96DT5 4516 aa1.59□□□□□ -2.15
UBR3-208ENST00000474426 MAST4O15021 2626 aa1.59□□□□□ -2.16
UBR3-208ENST00000474426 DNAH8Q96JB1 4490 aa1.59□□□□□ -2.16
UBR3-208ENST00000474426 BRD3OSQ6XYD6 125 aa1.59□□□□□ -2.16
UBR3-208ENST00000474426 DNAH3Q8TD57 4116 aa1.58□□□□□ -2.16
UBR3-208ENST00000474426 PTPN13Q12923 2485 aa1.58□□□□□ -2.16
UBR3-208ENST00000474426 NIPBLQ6KC79 2804 aaeCLIP1.58□□□□□ -2.16
UBR3-208ENST00000474426 APC2O95996 2303 aa1.58□□□□□ -2.16
UBR3-208ENST00000474426 DEFB119Q8N690 84 aa1.57□□□□□ -2.16
UBR3-208ENST00000474426 EP300Q09472 2414 aaPredicted RBP1.57□□□□□ -2.16
UBR3-208ENST00000474426 DEFB136Q30KP8 78 aa1.57□□□□□ -2.16
UBR3-208ENST00000474426 LCE1FQ5T754 118 aa1.57□□□□□ -2.16
UBR3-208ENST00000474426 TRRAPQ9Y4A5 3859 aa1.56□□□□□ -2.16
UBR3-208ENST00000474426 H3BUA1 57 aa1.56□□□□□ -2.16
UBR3-208ENST00000474426 ANKRD11Q6UB99 2663 aaPredicted RBP1.56□□□□□ -2.16
UBR3-208ENST00000474426 TEX15Q9BXT5 2789 aa1.56□□□□□ -2.16
UBR3-208ENST00000474426 COL6A5A8TX70 2615 aa1.56□□□□□ -2.16
UBR3-208ENST00000474426 A0A0D9SG42 100 aa1.56□□□□□ -2.16
UBR3-208ENST00000474426 ZFYVE26Q68DK2 2539 aa1.55□□□□□ -2.16
UBR3-208ENST00000474426 FASNP49327 2511 aaKnown RBP1.55□□□□□ -2.16
UBR3-208ENST00000474426 KRTAP10-1P60331 282 aa1.55□□□□□ -2.16
UBR3-208ENST00000474426 KRTAP12-1P59990 96 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 ITPR3Q14573 2671 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 KRTAP1-4P0C5Y4 121 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 NCOR2Q9Y618 2525 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 ACACBO00763 2458 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 ITPR2Q14571 2701 aa1.54□□□□□ -2.16
UBR3-208ENST00000474426 HIVEP3Q5T1R4 2406 aa1.53□□□□□ -2.16
UBR3-208ENST00000474426 FAM186AA6NE01 2351 aa1.53□□□□□ -2.16
UBR3-208ENST00000474426 CD52P31358 61 aa1.53□□□□□ -2.16
UBR3-208ENST00000474426 RYR3Q15413 4870 aa1.53□□□□□ -2.16
UBR3-208ENST00000474426 USP9XQ93008 2570 aaPredicted RBP1.53□□□□□ -2.16
UBR3-208ENST00000474426 KRTAP10-3P60369 221 aa1.53□□□□□ -2.17
UBR3-208ENST00000474426 CENPEQ02224 2701 aa1.53□□□□□ -2.17
UBR3-208ENST00000474426 LRRK2Q5S007 2527 aa1.52□□□□□ -2.17
UBR3-208ENST00000474426 DOPEY1Q5JWR5 2465 aa1.52□□□□□ -2.17
UBR3-208ENST00000474426 CMYA5Q8N3K9 4069 aa1.52□□□□□ -2.17
UBR3-208ENST00000474426 KRTAP1-1Q07627 177 aa1.51□□□□□ -2.17
UBR3-208ENST00000474426 LCE1EQ5T753 118 aa1.51□□□□□ -2.17
UBR3-208ENST00000474426 NOP10Q9NPE3 64 aaKnown RBP1.51□□□□□ -2.17
UBR3-208ENST00000474426 PRO0255Q9UI72 69 aa1.51□□□□□ -2.17
UBR3-208ENST00000474426 DYNC2H1Q8NCM8 4307 aaKnown RBP1.51□□□□□ -2.17
UBR3-208ENST00000474426 DEFB124Q8NES8 71 aa1.51□□□□□ -2.17
UBR3-208ENST00000474426 DNAH1Q9P2D7 4330 aa1.51□□□□□ -2.17
UBR3-208ENST00000474426 ANK3Q12955 4377 aaKnown RBP1.5□□□□□ -2.17
UBR3-208ENST00000474426 BIRC6Q9NR09 4857 aa1.5□□□□□ -2.17
UBR3-208ENST00000474426 FLNBO75369 2602 aaKnown RBP1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms