RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 RPS28P62857 69 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-211ENST00000471947 SPAG11AQ6PDA7 123 aa8.03□□□□□ -1.12
CCDC88A-211ENST00000471947 DNAH6Q9C0G6 4158 aa8.02□□□□□ -1.13
CCDC88A-211ENST00000471947 KRTAP29-1A8MX34 341 aaPredicted RBP8.02□□□□□ -1.13
CCDC88A-211ENST00000471947 FP248Q71RG6 208 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-211ENST00000471947 DNAH2Q9P225 4427 aa8.01□□□□□ -1.13
CCDC88A-211ENST00000471947 SSBP3-AS1Q7Z2R9 100 aa8.01□□□□□ -1.13
CCDC88A-211ENST00000471947 Q8N9P0 234 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-211ENST00000471947 HYDINQ4G0P3 5121 aa8□□□□□ -1.13
CCDC88A-211ENST00000471947 LINC00483Q53H64 154 aa8□□□□□ -1.13
CCDC88A-211ENST00000471947 LINC00336Q6ZUF6 198 aa8□□□□□ -1.13
CCDC88A-211ENST00000471947 PRR15LQ9BU68 103 aa7.99□□□□□ -1.13
CCDC88A-211ENST00000471947 Q5W150 140 aa7.99□□□□□ -1.13
CCDC88A-211ENST00000471947 A8MUN3 132 aa7.98□□□□□ -1.13
CCDC88A-211ENST00000471947 Q5XG85 94 aa7.98□□□□□ -1.13
CCDC88A-211ENST00000471947 DNAH8Q96JB1 4490 aa7.98□□□□□ -1.13
CCDC88A-211ENST00000471947 SPTSSBQ8NFR3 76 aa7.97□□□□□ -1.13
CCDC88A-211ENST00000471947 ATP5EP56381 51 aaPredicted RBP7.96□□□□□ -1.13
CCDC88A-211ENST00000471947 C1orf195Q5TG92 126 aa7.96□□□□□ -1.13
CCDC88A-211ENST00000471947 LINC00304Q8N9R0 145 aa7.96□□□□□ -1.13
CCDC88A-211ENST00000471947 FAT1Q14517 4588 aa7.96□□□□□ -1.14
CCDC88A-211ENST00000471947 LRP1BQ9NZR2 4599 aa7.96□□□□□ -1.14
CCDC88A-211ENST00000471947 CD164Q04900 197 aa7.95□□□□□ -1.14
CCDC88A-211ENST00000471947 DNAH17Q9UFH2 4485 aa7.94□□□□□ -1.14
CCDC88A-211ENST00000471947 COA5Q86WW8 74 aa7.93□□□□□ -1.14
CCDC88A-211ENST00000471947 LCE6AA0A183 80 aa7.93□□□□□ -1.14
CCDC88A-211ENST00000471947 LIMD2Q9BT23 127 aa7.92□□□□□ -1.14
CCDC88A-211ENST00000471947 TP53AIP1Q9HCN2 124 aa7.92□□□□□ -1.14
CCDC88A-211ENST00000471947 Q8N1X5 172 aa7.91□□□□□ -1.14
CCDC88A-211ENST00000471947 A6NED7 52 aa7.88□□□□□ -1.15
CCDC88A-211ENST00000471947 ZCCHC13Q8WW36 166 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-211ENST00000471947 SEC61GP60059 68 aa7.87□□□□□ -1.15
CCDC88A-211ENST00000471947 DNAH5Q8TE73 4624 aa7.87□□□□□ -1.15
CCDC88A-211ENST00000471947 FAM229AH3BQW9 127 aa7.85□□□□□ -1.15
CCDC88A-211ENST00000471947 KRTAP1-4P0C5Y4 121 aa7.85□□□□□ -1.15
CCDC88A-211ENST00000471947 V9GYY9 64 aa7.85□□□□□ -1.15
CCDC88A-211ENST00000471947 Q6ZSA8 131 aa7.84□□□□□ -1.15
CCDC88A-211ENST00000471947 C7orf65Q6ZTY9 151 aa7.84□□□□□ -1.15
CCDC88A-211ENST00000471947 PKHD1P08F94 4074 aa7.83□□□□□ -1.16
CCDC88A-211ENST00000471947 HECTD4Q9Y4D8 3996 aa7.83□□□□□ -1.16
CCDC88A-211ENST00000471947 HRES1P13985 223 aa7.81□□□□□ -1.16
CCDC88A-211ENST00000471947 DYNC2H1Q8NCM8 4307 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-211ENST00000471947 PRO0628Q9UI54 55 aa7.81□□□□□ -1.16
CCDC88A-211ENST00000471947 A8MU10 97 aa7.8□□□□□ -1.16
CCDC88A-211ENST00000471947 LOC101927531A0A1B0GV80 90 aa7.79□□□□□ -1.16
CCDC88A-211ENST00000471947 C8orf87E5RJ46 101 aa7.78□□□□□ -1.16
CCDC88A-211ENST00000471947 H3BPC8 53 aa7.78□□□□□ -1.16
CCDC88A-211ENST00000471947 CYP4F30PQ9H0H9 118 aa7.78□□□□□ -1.16
CCDC88A-211ENST00000471947 Q5VSD8 79 aa7.75□□□□□ -1.17
CCDC88A-211ENST00000471947 IGLV7-46A0A075B6I9 117 aa7.74□□□□□ -1.17
CCDC88A-211ENST00000471947 KMT2CQ8NEZ4 4911 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-211ENST00000471947 VPS13BQ7Z7G8 4022 aa7.72□□□□□ -1.17
CCDC88A-211ENST00000471947 DYNC1H1Q14204 4646 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-211ENST00000471947 ACYP2P14621 99 aa7.71□□□□□ -1.17
CCDC88A-211ENST00000471947 MYCBP2O75592 4640 aa7.69□□□□□ -1.18
CCDC88A-211ENST00000471947 SPANXA2-OT1Q8N9U9 137 aa7.68□□□□□ -1.18
CCDC88A-211ENST00000471947 SACSQ9NZJ4 4579 aa7.66□□□□□ -1.18
CCDC88A-211ENST00000471947 PMAIP1Q13794 54 aa7.66□□□□□ -1.18
CCDC88A-211ENST00000471947 KRTAP21-3Q3LHN1 58 aa7.66□□□□□ -1.18
CCDC88A-211ENST00000471947 A0A1B0GU69 56 aa7.63□□□□□ -1.19
CCDC88A-211ENST00000471947 FAT2Q9NYQ8 4349 aa7.62□□□□□ -1.19
CCDC88A-211ENST00000471947 KIAA1109Q2LD37 5005 aa7.62□□□□□ -1.19
CCDC88A-211ENST00000471947 Q5VV11 94 aa7.62□□□□□ -1.19
CCDC88A-211ENST00000471947 LRP1Q07954 4544 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-211ENST00000471947 SPINK7P58062 85 aa7.6□□□□□ -1.19
CCDC88A-211ENST00000471947 ASB16-AS1Q495Z4 193 aa7.59□□□□□ -1.19
CCDC88A-211ENST00000471947 Q1T7F1 81 aa7.58□□□□□ -1.2
CCDC88A-211ENST00000471947 A0A1B0GVY2 172 aa7.58□□□□□ -1.2
CCDC88A-211ENST00000471947 ATP11AUNQ6ZP68 121 aa7.58□□□□□ -1.2
CCDC88A-211ENST00000471947 FAT3Q8TDW7 4589 aa7.54□□□□□ -1.2
CCDC88A-211ENST00000471947 APOBP04114 4563 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-211ENST00000471947 ALMS1Q8TCU4 4167 aa7.53□□□□□ -1.2
CCDC88A-211ENST00000471947 KRTAP16-1A8MUX0 517 aa7.53□□□□□ -1.2
CCDC88A-211ENST00000471947 RYR3Q15413 4870 aa7.48□□□□□ -1.21
CCDC88A-211ENST00000471947 RYR1P21817 5038 aa7.46□□□□□ -1.21
CCDC88A-211ENST00000471947 DMAC1Q96GE9 116 aa7.46□□□□□ -1.22
CCDC88A-211ENST00000471947 KRTAP13-3Q3SY46 172 aa7.45□□□□□ -1.22
CCDC88A-211ENST00000471947 LCA10Q71F78 164 aa7.45□□□□□ -1.22
CCDC88A-211ENST00000471947 PKD1P98161 4303 aa7.45□□□□□ -1.22
CCDC88A-211ENST00000471947 J3QL48 77 aa7.44□□□□□ -1.22
CCDC88A-211ENST00000471947 RYR2Q92736 4967 aa7.42□□□□□ -1.22
CCDC88A-211ENST00000471947 LINC01558Q9Y6Z2 57 aa7.42□□□□□ -1.22
CCDC88A-211ENST00000471947 A0A0D9SG42 100 aa7.37□□□□□ -1.23
CCDC88A-211ENST00000471947 KRTAP10-4P60372 401 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-211ENST00000471947 Q75L30 129 aa7.37□□□□□ -1.23
CCDC88A-211ENST00000471947 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
CCDC88A-211ENST00000471947 KRTAP17-1Q9BYP8 105 aa7.34□□□□□ -1.23
CCDC88A-211ENST00000471947 KRTAP4-5Q9BYR2 181 aa7.34□□□□□ -1.24
CCDC88A-211ENST00000471947 UQCR11O14957 56 aa7.32□□□□□ -1.24
CCDC88A-211ENST00000471947 SPATA8Q6RVD6 105 aa7.31□□□□□ -1.24
CCDC88A-211ENST00000471947 CDC42SE1Q9NRR8 79 aa7.3□□□□□ -1.24
CCDC88A-211ENST00000471947 PRAC1Q96KF2 57 aa7.29□□□□□ -1.24
CCDC88A-211ENST00000471947 RBM12B-AS1Q9P1G2 102 aa7.29□□□□□ -1.24
CCDC88A-211ENST00000471947 A8MUU9 505 aa7.29□□□□□ -1.24
CCDC88A-211ENST00000471947 C20orf166-AS1Q96NR2 134 aa7.27□□□□□ -1.25
CCDC88A-211ENST00000471947 CRIPTQ9P021 101 aa7.26□□□□□ -1.25
CCDC88A-211ENST00000471947 EPPK1P58107 5090 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-211ENST00000471947 XP32Q5T750 250 aa7.25□□□□□ -1.25
CCDC88A-211ENST00000471947 KRTAP10-8P60410 259 aa7.24□□□□□ -1.25
CCDC88A-211ENST00000471947 RPS29P62273 56 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms