RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 ZCCHC13Q8WW36 166 aaKnown RBP9.09□□□□□ -0.95
LIMS2-213ENST00000469300 SPINK7P58062 85 aa9.08□□□□□ -0.96
LIMS2-213ENST00000469300 LINC00483Q53H64 154 aa9.08□□□□□ -0.96
LIMS2-213ENST00000469300 CSMD1Q96PZ7 3565 aa9.07□□□□□ -0.96
LIMS2-213ENST00000469300 DMAC1Q96GE9 116 aa9.06□□□□□ -0.96
LIMS2-213ENST00000469300 SMG1Q96Q15 3661 aaKnown RBP9.06□□□□□ -0.96
LIMS2-213ENST00000469300 A0A1B0GU33 70 aa9.05□□□□□ -0.96
LIMS2-213ENST00000469300 KRTAP4-16G5E9R7 235 aaPredicted RBP9.05□□□□□ -0.96
LIMS2-213ENST00000469300 CELSR1Q9NYQ6 3014 aa9.04□□□□□ -0.96
LIMS2-213ENST00000469300 A0A0D9SG42 100 aa9.04□□□□□ -0.96
LIMS2-213ENST00000469300 HRES1P13985 223 aa9.03□□□□□ -0.96
LIMS2-213ENST00000469300 SEC61BP60468 96 aaKnown RBP9.02□□□□□ -0.97
LIMS2-213ENST00000469300 ASB16-AS1Q495Z4 193 aa9.02□□□□□ -0.97
LIMS2-213ENST00000469300 A0A0A0MQY5 61 aa9□□□□□ -0.97
LIMS2-213ENST00000469300 Q6ZRN7 208 aaPredicted RBP9□□□□□ -0.97
LIMS2-213ENST00000469300 PANO1I0J062 215 aa8.98□□□□□ -0.97
LIMS2-213ENST00000469300 TENM4Q6N022 2769 aa8.97□□□□□ -0.97
LIMS2-213ENST00000469300 CUBNO60494 3623 aa8.95□□□□□ -0.98
LIMS2-213ENST00000469300 SVEP1Q4LDE5 3571 aa8.92□□□□□ -0.98
LIMS2-213ENST00000469300 Q5W150 140 aa8.92□□□□□ -0.98
LIMS2-213ENST00000469300 M0R2T5 61 aa8.88□□□□□ -0.99
LIMS2-213ENST00000469300 RPS29P62273 56 aaKnown RBP8.86□□□□□ -0.99
LIMS2-213ENST00000469300 FLG2Q5D862 2391 aaPredicted RBP8.85□□□□□ -0.99
LIMS2-213ENST00000469300 DMBT1Q9UGM3 2413 aaPredicted RBP8.85□□□□□ -0.99
LIMS2-213ENST00000469300 A6NN06 94 aa8.84□□□□□ -0.99
LIMS2-213ENST00000469300 S4R3F8 94 aa8.83□□□□□ -1
LIMS2-213ENST00000469300 A0A087X002 238 aa8.82□□□□□ -1
LIMS2-213ENST00000469300 KRTAP16-1A8MUX0 517 aa8.78□□□□□ -1
LIMS2-213ENST00000469300 TENM3Q9P273 2699 aa8.76□□□□□ -1.01
LIMS2-213ENST00000469300 TENM1Q9UKZ4 2725 aa8.74□□□□□ -1.01
LIMS2-213ENST00000469300 CAMK2N1Q7Z7J9 78 aa8.74□□□□□ -1.01
LIMS2-213ENST00000469300 KRTAP29-1A8MX34 341 aaPredicted RBP8.74□□□□□ -1.01
LIMS2-213ENST00000469300 ROMO1P60602 79 aa8.74□□□□□ -1.01
LIMS2-213ENST00000469300 KRTAP7-1Q8IUC3 87 aa8.74□□□□□ -1.01
LIMS2-213ENST00000469300 KRTAP11-1Q8IUC1 163 aa8.73□□□□□ -1.01
LIMS2-213ENST00000469300 SPATA8Q6RVD6 105 aa8.72□□□□□ -1.01
LIMS2-213ENST00000469300 KRTAP13-1Q8IUC0 172 aa8.72□□□□□ -1.01
LIMS2-213ENST00000469300 FBN1P35555 2871 aaKnown RBP8.7□□□□□ -1.02
LIMS2-213ENST00000469300 RPL37P61927 97 aaKnown RBP8.69□□□□□ -1.02
LIMS2-213ENST00000469300 VWFP04275 2813 aa8.68□□□□□ -1.02
LIMS2-213ENST00000469300 R4GN34 69 aa8.64□□□□□ -1.03
LIMS2-213ENST00000469300 PDZD2O15018 2839 aa8.63□□□□□ -1.03
LIMS2-213ENST00000469300 KRTAP13-2Q52LG2 175 aa8.61□□□□□ -1.03
LIMS2-213ENST00000469300 PKD1L1Q8TDX9 2849 aa8.61□□□□□ -1.03
LIMS2-213ENST00000469300 KRTAP25-1Q3LHN0 102 aa8.6□□□□□ -1.03
LIMS2-213ENST00000469300 H1FX-AS1Q4G0G2 97 aa8.59□□□□□ -1.03
LIMS2-213ENST00000469300 SPENQ96T58 3664 aaKnown RBP8.59□□□□□ -1.03
LIMS2-213ENST00000469300 CSMD2Q7Z408 3487 aa8.59□□□□□ -1.03
LIMS2-213ENST00000469300 A8MU10 97 aa8.57□□□□□ -1.04
LIMS2-213ENST00000469300 NOTCH2NLQ7Z3S9 236 aa8.56□□□□□ -1.04
LIMS2-213ENST00000469300 ADM2Q7Z4H4 148 aa8.56□□□□□ -1.04
LIMS2-213ENST00000469300 OTOGQ6ZRI0 2925 aa8.56□□□□□ -1.04
LIMS2-213ENST00000469300 NBPF19A0A087WUL8 3843 aa8.51□□□□□ -1.05
LIMS2-213ENST00000469300 ZFHX3Q15911 3703 aa8.49□□□□□ -1.05
LIMS2-213ENST00000469300 NDUFAF8A1L188 74 aa8.47□□□□□ -1.05
LIMS2-213ENST00000469300 M0QZ58 72 aa8.44□□□□□ -1.06
LIMS2-213ENST00000469300 TGP01266 2768 aa8.41□□□□□ -1.06
LIMS2-213ENST00000469300 TENM2Q9NT68 2774 aa8.38□□□□□ -1.07
LIMS2-213ENST00000469300 A8MUU9 505 aa8.36□□□□□ -1.07
LIMS2-213ENST00000469300 C20orf166-AS1Q96NR2 134 aa8.33□□□□□ -1.08
LIMS2-213ENST00000469300 KRTAP1-4P0C5Y4 121 aa8.33□□□□□ -1.08
LIMS2-213ENST00000469300 PLAC4Q8WY50 150 aa8.32□□□□□ -1.08
LIMS2-213ENST00000469300 BSNQ9UPA5 3926 aa8.27□□□□□ -1.09
LIMS2-213ENST00000469300 SRRM2Q9UQ35 2752 aaKnown RBP8.18□□□□□ -1.1
LIMS2-213ENST00000469300 TPRXLQ17RH7 258 aa8.15□□□□□ -1.1
LIMS2-213ENST00000469300 TRRAPQ9Y4A5 3859 aa8.14□□□□□ -1.11
LIMS2-213ENST00000469300 XP32Q5T750 250 aa8.14□□□□□ -1.11
LIMS2-213ENST00000469300 A0A1B0GVY2 172 aa8.08□□□□□ -1.12
LIMS2-213ENST00000469300 FBN3Q75N90 2809 aa8.04□□□□□ -1.12
LIMS2-213ENST00000469300 VPS13CQ709C8 3753 aa8.01□□□□□ -1.13
LIMS2-213ENST00000469300 KRTAP10-8P60410 259 aa7.98□□□□□ -1.13
LIMS2-213ENST00000469300 KRTAP13-3Q3SY46 172 aa7.97□□□□□ -1.13
LIMS2-213ENST00000469300 ANK3Q12955 4377 aaKnown RBP7.9□□□□□ -1.14
LIMS2-213ENST00000469300 C10orf95Q9H7T3 257 aa7.86□□□□□ -1.15
LIMS2-213ENST00000469300 H0YAA0 97 aa7.85□□□□□ -1.15
LIMS2-213ENST00000469300 TNP1P09430 55 aa7.85□□□□□ -1.15
LIMS2-213ENST00000469300 P0C880 135 aa7.85□□□□□ -1.15
LIMS2-213ENST00000469300 COL7A1Q02388 2944 aa7.84□□□□□ -1.15
LIMS2-213ENST00000469300 PP632Q6XCG6 107 aa7.81□□□□□ -1.16
LIMS2-213ENST00000469300 MEGF8Q7Z7M0 2845 aa7.8□□□□□ -1.16
LIMS2-213ENST00000469300 ZNF469Q96JG9 3925 aaPredicted RBP7.76□□□□□ -1.17
LIMS2-213ENST00000469300 KRTAP10-10P60014 251 aa7.67□□□□□ -1.18
LIMS2-213ENST00000469300 CSMD3Q7Z407 3707 aa7.65□□□□□ -1.18
LIMS2-213ENST00000469300 PRO2289Q9P1D8 64 aa7.58□□□□□ -1.2
LIMS2-213ENST00000469300 AKAP9Q99996 3911 aa7.37□□□□□ -1.23
LIMS2-213ENST00000469300 MT1HL1P0DM35 61 aa7.35□□□□□ -1.23
LIMS2-213ENST00000469300 HUWE1Q7Z6Z7 4374 aaKnown RBP7.31□□□□□ -1.24
LIMS2-213ENST00000469300 KRTAP3-1Q9BYR8 98 aa7.29□□□□□ -1.24
LIMS2-213ENST00000469300 KRTAP10-4P60372 401 aaPredicted RBP7.24□□□□□ -1.25
LIMS2-213ENST00000469300 KRTAP12-2P59991 146 aa7.2□□□□□ -1.26
LIMS2-213ENST00000469300 KRTAP12-1P59990 96 aa7.12□□□□□ -1.27
LIMS2-213ENST00000469300 KRTAP13-4Q3LI77 160 aa7.12□□□□□ -1.27
LIMS2-213ENST00000469300 KRTAP15-1Q3LI76 137 aa7.06□□□□□ -1.28
LIMS2-213ENST00000469300 KRTAP4-5Q9BYR2 181 aa7.05□□□□□ -1.28
LIMS2-213ENST00000469300 DNAH9Q9NYC9 4486 aa7.02□□□□□ -1.29
LIMS2-213ENST00000469300 KRTAP10-6P60371 365 aaPredicted RBP7.02□□□□□ -1.29
LIMS2-213ENST00000469300 DNAH10Q8IVF4 4471 aa7.02□□□□□ -1.29
LIMS2-213ENST00000469300 PLECQ15149 4684 aaKnown RBP7□□□□□ -1.29
LIMS2-213ENST00000469300 DNHD1Q96M86 4753 aa6.98□□□□□ -1.29
LIMS2-213ENST00000469300 DNAH11Q96DT5 4516 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms