RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 NOTCH2NLQ7Z3S9 236 aa10.31□□□□□ -0.76
COL6A1-203ENST00000466285 SIGMAR1Q99720 223 aa10.31□□□□□ -0.76
COL6A1-203ENST00000466285 H3BMG7 143 aa10.29□□□□□ -0.76
COL6A1-203ENST00000466285 HRES1P13985 223 aa10.28□□□□□ -0.76
COL6A1-203ENST00000466285 A0A1B0GV72 72 aa10.27□□□□□ -0.77
COL6A1-203ENST00000466285 BAALC-AS2P0C853 105 aa10.27□□□□□ -0.77
COL6A1-203ENST00000466285 MPLKIPQ8TAP9 179 aa10.27□□□□□ -0.77
COL6A1-203ENST00000466285 SPCS1Q9Y6A9 102 aa10.27□□□□□ -0.77
COL6A1-203ENST00000466285 KRTAP19-1Q8IUB9 90 aa10.25□□□□□ -0.77
COL6A1-203ENST00000466285 KRTAP9-3Q9BYQ3 159 aa10.24□□□□□ -0.77
COL6A1-203ENST00000466285 FAM236DA0A1B0GTK5 79 aa10.23□□□□□ -0.77
COL6A1-203ENST00000466285 C9JAW5 83 aa10.23□□□□□ -0.77
COL6A1-203ENST00000466285 K7EP34 96 aa10.23□□□□□ -0.77
COL6A1-203ENST00000466285 FAM236CP0DP71 79 aa10.23□□□□□ -0.77
COL6A1-203ENST00000466285 DEFB116Q30KQ4 102 aa10.22□□□□□ -0.77
COL6A1-203ENST00000466285 ANKRD29Q8N6D5 301 aa10.22□□□□□ -0.77
COL6A1-203ENST00000466285 H3BT86 120 aa10.21□□□□□ -0.77
COL6A1-203ENST00000466285 IGKV4-1P06312 121 aa10.21□□□□□ -0.77
COL6A1-203ENST00000466285 TRBV7-4A0A0J9YYF1 115 aa10.2□□□□□ -0.78
COL6A1-203ENST00000466285 LINC00313P59037 77 aa10.2□□□□□ -0.78
COL6A1-203ENST00000466285 PRO0461Q9UI25 63 aa10.2□□□□□ -0.78
COL6A1-203ENST00000466285 SMCPP49901 116 aaPredicted RBP10.17□□□□□ -0.78
COL6A1-203ENST00000466285 KRTAP10-10P60014 251 aa10.15□□□□□ -0.78
COL6A1-203ENST00000466285 MTURNQ8N3F0 131 aa10.15□□□□□ -0.78
COL6A1-203ENST00000466285 RBM3P98179 157 aaKnown RBP10.14□□□□□ -0.79
COL6A1-203ENST00000466285 LINC00472Q9H8W2 130 aa10.14□□□□□ -0.79
COL6A1-203ENST00000466285 JMJD7-PLA2G4BH0Y9G9 81 aa10.13□□□□□ -0.79
COL6A1-203ENST00000466285 GTF2H5Q6ZYL4 71 aa10.12□□□□□ -0.79
COL6A1-203ENST00000466285 IGHV6-1A0A0B4J1U7 121 aa10.11□□□□□ -0.79
COL6A1-203ENST00000466285 LOC110117498A0A087WWA1 95 aa10.1□□□□□ -0.79
COL6A1-203ENST00000466285 RBM12B-AS1Q9P1G2 102 aa10.09□□□□□ -0.79
COL6A1-203ENST00000466285 Q6ZQT0 140 aa10.08□□□□□ -0.8
COL6A1-203ENST00000466285 DSCR8Q96T75 97 aa10.08□□□□□ -0.8
COL6A1-203ENST00000466285 MACF1Q9UPN3 7388 aaKnown RBP10.07□□□□□ -0.8
COL6A1-203ENST00000466285 CCKP06307 115 aa10.06□□□□□ -0.8
COL6A1-203ENST00000466285 PDE6GP18545 87 aa10.05□□□□□ -0.8
COL6A1-203ENST00000466285 SYNE2Q8WXH0 6885 aaKnown RBP10.04□□□□□ -0.8
COL6A1-203ENST00000466285 C14orf132Q9NPU4 83 aa10.04□□□□□ -0.8
COL6A1-203ENST00000466285 F8W1H4 67 aa10.03□□□□□ -0.8
COL6A1-203ENST00000466285 A0A1B0GV90 55 aa10□□□□□ -0.81
COL6A1-203ENST00000466285 A0A1B0GW54 56 aa10□□□□□ -0.81
COL6A1-203ENST00000466285 C21orf62-AS1Q17RA5 79 aa10□□□□□ -0.81
COL6A1-203ENST00000466285 A0A1B0GVX0 72 aa9.99□□□□□ -0.81
COL6A1-203ENST00000466285 VPS25Q9BRG1 176 aa9.97□□□□□ -0.81
COL6A1-203ENST00000466285 ZCCHC13Q8WW36 166 aaKnown RBP9.96□□□□□ -0.82
COL6A1-203ENST00000466285 SPINK7P58062 85 aa9.94□□□□□ -0.82
COL6A1-203ENST00000466285 C8orf87E5RJ46 101 aa9.93□□□□□ -0.82
COL6A1-203ENST00000466285 KRTAP19-6Q3LI70 58 aa9.93□□□□□ -0.82
COL6A1-203ENST00000466285 ETDBQ3ZM63 59 aa9.91□□□□□ -0.82
COL6A1-203ENST00000466285 WFDC13Q8IUB5 93 aa9.86□□□□□ -0.83
COL6A1-203ENST00000466285 Q8N9P0 234 aaPredicted RBP9.84□□□□□ -0.83
COL6A1-203ENST00000466285 J3KT08 172 aa9.78□□□□□ -0.84
COL6A1-203ENST00000466285 C8orf17Q9NRJ1 99 aa9.78□□□□□ -0.84
COL6A1-203ENST00000466285 A8MWP4 228 aa9.77□□□□□ -0.85
COL6A1-203ENST00000466285 NREPQ16612 68 aa9.76□□□□□ -0.85
COL6A1-203ENST00000466285 LINC00846Q9NV44 126 aa9.76□□□□□ -0.85
COL6A1-203ENST00000466285 IGKV3D-7A0A0C4DH55 119 aa9.75□□□□□ -0.85
COL6A1-203ENST00000466285 Q6ZVQ6 151 aa9.74□□□□□ -0.85
COL6A1-203ENST00000466285 FAM240AA0A1B0GVK7 77 aa9.71□□□□□ -0.86
COL6A1-203ENST00000466285 NDUFB1O75438 58 aa9.68□□□□□ -0.86
COL6A1-203ENST00000466285 ACYP1P07311 99 aa9.66□□□□□ -0.86
COL6A1-203ENST00000466285 UBL5Q9BZL1 73 aa9.66□□□□□ -0.86
COL6A1-203ENST00000466285 PRR15Q8IV56 129 aa9.65□□□□□ -0.86
COL6A1-203ENST00000466285 MMP24-AS1A0A0U1RRL7 71 aa9.64□□□□□ -0.87
COL6A1-203ENST00000466285 BPY2O14599 106 aa9.64□□□□□ -0.87
COL6A1-203ENST00000466285 KRTAP6-3Q3LI67 103 aa9.62□□□□□ -0.87
COL6A1-203ENST00000466285 K7EQZ3 153 aa9.61□□□□□ -0.87
COL6A1-203ENST00000466285 H1FX-AS1Q4G0G2 97 aa9.58□□□□□ -0.88
COL6A1-203ENST00000466285 MRPL34Q9BQ48 92 aaKnown RBP9.57□□□□□ -0.88
COL6A1-203ENST00000466285 CXCL6P80162 114 aa9.56□□□□□ -0.88
COL6A1-203ENST00000466285 TMEM254Q8TBM7 123 aa9.56□□□□□ -0.88
COL6A1-203ENST00000466285 Q8N9L7 120 aa9.53□□□□□ -0.88
COL6A1-203ENST00000466285 Q5W150 140 aa9.51□□□□□ -0.89
COL6A1-203ENST00000466285 J3QR89 54 aa9.5□□□□□ -0.89
COL6A1-203ENST00000466285 NEBP20929 6669 aa9.5□□□□□ -0.89
COL6A1-203ENST00000466285 IGKV2D-30A0A075B6S6 120 aa9.49□□□□□ -0.89
COL6A1-203ENST00000466285 IGKV2-30P06310 120 aa9.49□□□□□ -0.89
COL6A1-203ENST00000466285 ATP5EP2Q5VTU8 51 aa9.49□□□□□ -0.89
COL6A1-203ENST00000466285 hDV103S1A0JD37 113 aa9.47□□□□□ -0.89
COL6A1-203ENST00000466285 NDUFS5O43920 106 aa9.47□□□□□ -0.89
COL6A1-203ENST00000466285 LINC00643Q86TS7 51 aa9.46□□□□□ -0.9
COL6A1-203ENST00000466285 MUC12Q9UKN1 5478 aa9.43□□□□□ -0.9
COL6A1-203ENST00000466285 MT1BP07438 61 aa9.41□□□□□ -0.9
COL6A1-203ENST00000466285 HCG22E2RYF7 251 aa9.4□□□□□ -0.9
COL6A1-203ENST00000466285 CASC2Q6XLA1 102 aa9.4□□□□□ -0.9
COL6A1-203ENST00000466285 C7orf65Q6ZTY9 151 aa9.4□□□□□ -0.9
COL6A1-203ENST00000466285 K7ERU9 68 aa9.39□□□□□ -0.91
COL6A1-203ENST00000466285 C4orf26Q17RF5 130 aa9.39□□□□□ -0.91
COL6A1-203ENST00000466285 C5orf47Q569G3 176 aa9.34□□□□□ -0.91
COL6A1-203ENST00000466285 KRTAP3-1Q9BYR8 98 aa9.32□□□□□ -0.92
COL6A1-203ENST00000466285 A6NN06 94 aa9.29□□□□□ -0.92
COL6A1-203ENST00000466285 HIST1H4AP62805 103 aaKnown RBP9.27□□□□□ -0.93
COL6A1-203ENST00000466285 A0A087WVE0 104 aa9.26□□□□□ -0.93
COL6A1-203ENST00000466285 FAM236AA0A1B0GUQ0 79 aa9.25□□□□□ -0.93
COL6A1-203ENST00000466285 FAM236BA0A1B0GV22 79 aa9.25□□□□□ -0.93
COL6A1-203ENST00000466285 KRTAP19-8Q3LI54 63 aa9.25□□□□□ -0.93
COL6A1-203ENST00000466285 Q5VV11 94 aa9.22□□□□□ -0.93
COL6A1-203ENST00000466285 SPRR2GQ9BYE4 73 aa9.22□□□□□ -0.93
COL6A1-203ENST00000466285 MT-ATP8P03928 68 aa9.2□□□□□ -0.94
COL6A1-203ENST00000466285 IMUPQ9GZP8 106 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms