RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 LAMA2P24043 3122 aaKnown RBP-1.1□□□□□ -2.59
USP40-209ENST00000452724 CCDC168Q8NDH2 2452 aa-1.11□□□□□ -2.59
USP40-209ENST00000452724 WDR87Q6ZQQ6 2873 aa-1.11□□□□□ -2.59
USP40-209ENST00000452724 DCAF1Q9Y4B6 1507 aa-1.11□□□□□ -2.59
USP40-209ENST00000452724 ERVK-7P63135 1459 aa-1.12□□□□□ -2.59
USP40-209ENST00000452724 DNAH2Q9P225 4427 aa-1.12□□□□□ -2.59
USP40-209ENST00000452724 PLCH1Q4KWH8 1693 aa-1.12□□□□□ -2.59
USP40-209ENST00000452724 KIAA0586Q9BVV6 1533 aa-1.12□□□□□ -2.59
USP40-209ENST00000452724 SACSQ9NZJ4 4579 aa-1.13□□□□□ -2.59
USP40-209ENST00000452724 ETDCA0A1B0GVM5 59 aa-1.13□□□□□ -2.59
USP40-209ENST00000452724 RB1CC1Q8TDY2 1594 aa-1.13□□□□□ -2.59
USP40-209ENST00000452724 ANKARQ7Z5J8 1434 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 ITSN1Q15811 1721 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 MMP24-AS1A0A0U1RRL7 71 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 RPS27P42677 84 aaKnown RBP-1.14□□□□□ -2.59
USP40-209ENST00000452724 DEFB1P60022 68 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 ENHOQ6UWT2 76 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 RPS27LQ71UM5 84 aaKnown RBP-1.14□□□□□ -2.59
USP40-209ENST00000452724 CCDC18Q5T9S5 1454 aa-1.14□□□□□ -2.59
USP40-209ENST00000452724 ZC3H13Q5T200 1668 aaKnown RBP-1.15□□□□□ -2.59
USP40-209ENST00000452724 CFAP43Q8NDM7 1665 aa-1.15□□□□□ -2.59
USP40-209ENST00000452724 IGLV5-48A0A075B6I7 105 aa-1.15□□□□□ -2.59
USP40-209ENST00000452724 RICTORQ6R327 1708 aa-1.15□□□□□ -2.59
USP40-209ENST00000452724 MINOS1Q5TGZ0 78 aa-1.16□□□□□ -2.6
USP40-209ENST00000452724 RNF17Q9BXT8 1623 aaKnown RBP-1.16□□□□□ -2.6
USP40-209ENST00000452724 TRIOO75962 3097 aa-1.17□□□□□ -2.6
USP40-209ENST00000452724 CFAP74Q9C0B2 1584 aa-1.17□□□□□ -2.6
USP40-209ENST00000452724 INO80Q9ULG1 1556 aaPredicted RBP-1.17□□□□□ -2.6
USP40-209ENST00000452724 PLECQ15149 4684 aaKnown RBP-1.18□□□□□ -2.6
USP40-209ENST00000452724 H3BUA1 57 aa-1.18□□□□□ -2.6
USP40-209ENST00000452724 TNP1P09430 55 aa-1.18□□□□□ -2.6
USP40-209ENST00000452724 DEFB114Q30KQ6 69 aa-1.18□□□□□ -2.6
USP40-209ENST00000452724 DNAH8Q96JB1 4490 aa-1.19□□□□□ -2.6
USP40-209ENST00000452724 RIF1Q5UIP0 2472 aaKnown RBP-1.2□□□□□ -2.6
USP40-209ENST00000452724 LMTK2Q8IWU2 1503 aa-1.2□□□□□ -2.6
USP40-209ENST00000452724 TJP1Q07157 1748 aa-1.2□□□□□ -2.6
USP40-209ENST00000452724 H3BVH4 76 aa-1.2□□□□□ -2.6
USP40-209ENST00000452724 ITSN2Q9NZM3 1697 aa-1.2□□□□□ -2.6
USP40-209ENST00000452724 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.21□□□□□ -2.6
USP40-209ENST00000452724 RANBP2P49792 3224 aaKnown RBP-1.21□□□□□ -2.6
USP40-209ENST00000452724 NOP10Q9NPE3 64 aaKnown RBP-1.21□□□□□ -2.6
USP40-209ENST00000452724 TOGARAM1Q9Y4F4 1720 aa-1.21□□□□□ -2.6
USP40-209ENST00000452724 SMR3BP02814 79 aaPredicted RBP-1.22□□□□□ -2.6
USP40-209ENST00000452724 CLPSL2Q6UWE3 100 aa-1.22□□□□□ -2.6
USP40-209ENST00000452724 C6orf48Q9UBA6 75 aa-1.22□□□□□ -2.6
USP40-209ENST00000452724 SMARCA2P51531 1590 aa-1.22□□□□□ -2.61
USP40-209ENST00000452724 LAMA3Q16787 3333 aa-1.23□□□□□ -2.61
USP40-209ENST00000452724 RRBP1Q9P2E9 1410 aaKnown RBP-1.23□□□□□ -2.61
USP40-209ENST00000452724 TEX15Q9BXT5 2789 aa-1.24□□□□□ -2.61
USP40-209ENST00000452724 RYR2Q92736 4967 aa-1.24□□□□□ -2.61
USP40-209ENST00000452724 KRTAP8-1Q8IUC2 63 aa-1.24□□□□□ -2.61
USP40-209ENST00000452724 RELNP78509 3460 aa-1.24□□□□□ -2.61
USP40-209ENST00000452724 TLN2Q9Y4G6 2542 aa-1.25□□□□□ -2.61
USP40-209ENST00000452724 KIF1AQ12756 1690 aa-1.25□□□□□ -2.61
USP40-209ENST00000452724 DNHD1Q96M86 4753 aa-1.25□□□□□ -2.61
USP40-209ENST00000452724 ATXN8Q156A1 80 aa-1.25□□□□□ -2.61
USP40-209ENST00000452724 A0A0C4DFX4 3053 aa-1.26□□□□□ -2.61
USP40-209ENST00000452724 NRAPQ86VF7 1730 aa-1.26□□□□□ -2.61
USP40-209ENST00000452724 PARP4Q9UKK3 1724 aaKnown RBP-1.26□□□□□ -2.61
USP40-209ENST00000452724 RNF213Q63HN8 5207 aa-1.26□□□□□ -2.61
USP40-209ENST00000452724 ANKRD36CQ5JPF3 1778 aa-1.26□□□□□ -2.61
USP40-209ENST00000452724 USP9XQ93008 2570 aaPredicted RBP-1.26□□□□□ -2.61
USP40-209ENST00000452724 CMYA5Q8N3K9 4069 aa-1.26□□□□□ -2.61
USP40-209ENST00000452724 NIPBLQ6KC79 2804 aaeCLIP-1.26□□□□□ -2.61
USP40-209ENST00000452724 FCER1GP30273 86 aa-1.27□□□□□ -2.61
USP40-209ENST00000452724 DIP2AQ14689 1571 aa-1.27□□□□□ -2.61
USP40-209ENST00000452724 ABCC6O95255 1503 aa-1.28□□□□□ -2.61
USP40-209ENST00000452724 MT1XP80297 61 aa-1.28□□□□□ -2.61
USP40-209ENST00000452724 FRYQ5TBA9 3013 aa-1.29□□□□□ -2.62
USP40-209ENST00000452724 ABCA8O94911 1581 aa-1.29□□□□□ -2.62
USP40-209ENST00000452724 NCBP2-AS2Q69YL0 99 aa-1.29□□□□□ -2.62
USP40-209ENST00000452724 LRRIQ1Q96JM4 1722 aa-1.29□□□□□ -2.62
USP40-209ENST00000452724 NHSQ6T4R5 1651 aa-1.29□□□□□ -2.62
USP40-209ENST00000452724 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.29□□□□□ -2.62
USP40-209ENST00000452724 DNMBPQ6XZF7 1577 aa-1.3□□□□□ -2.62
USP40-209ENST00000452724 MT1EP04732 61 aa-1.31□□□□□ -2.62
USP40-209ENST00000452724 BPTFQ12830 3046 aa-1.32□□□□□ -2.62
USP40-209ENST00000452724 DNAH7Q8WXX0 4024 aa-1.32□□□□□ -2.62
USP40-209ENST00000452724 SFTA3P0C7M3 94 aa-1.32□□□□□ -2.62
USP40-209ENST00000452724 COL12A1Q99715 3063 aa-1.33□□□□□ -2.62
USP40-209ENST00000452724 CLASP1Q7Z460 1538 aa-1.34□□□□□ -2.62
USP40-209ENST00000452724 K7EMI3 77 aa-1.34□□□□□ -2.62
USP40-209ENST00000452724 HILPDAQ9Y5L2 63 aa-1.34□□□□□ -2.62
USP40-209ENST00000452724 CDC42BPGQ6DT37 1551 aa-1.34□□□□□ -2.62
USP40-209ENST00000452724 C5orf42Q9H799 3197 aa-1.35□□□□□ -2.62
USP40-209ENST00000452724 M0QZ58 72 aa-1.35□□□□□ -2.63
USP40-209ENST00000452724 CDC42BPAQ5VT25 1732 aa-1.35□□□□□ -2.63
USP40-209ENST00000452724 SPTBN5Q9NRC6 3674 aaKnown RBP-1.35□□□□□ -2.63
USP40-209ENST00000452724 ITPR1Q14643 2758 aa-1.36□□□□□ -2.63
USP40-209ENST00000452724 GNG13Q9P2W3 67 aa-1.36□□□□□ -2.63
USP40-209ENST00000452724 MAST1Q9Y2H9 1570 aa-1.36□□□□□ -2.63
USP40-209ENST00000452724 SPENQ96T58 3664 aaKnown RBP-1.36□□□□□ -2.63
USP40-209ENST00000452724 LY75O60449 1722 aa-1.37□□□□□ -2.63
USP40-209ENST00000452724 M0QY20 66 aa-1.37□□□□□ -2.63
USP40-209ENST00000452724 ASXL1Q8IXJ9 1541 aa-1.37□□□□□ -2.63
USP40-209ENST00000452724 DUOX2Q9NRD8 1548 aa-1.37□□□□□ -2.63
USP40-209ENST00000452724 DYNC1H1Q14204 4646 aaKnown RBP-1.38□□□□□ -2.63
USP40-209ENST00000452724 A8MTW9 85 aa-1.38□□□□□ -2.63
USP40-209ENST00000452724 MYO5CQ9NQX4 1742 aa-1.38□□□□□ -2.63
USP40-209ENST00000452724 C3P01024 1663 aa-1.39□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms