RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CFC1P0CG37 223 aa3.7□□□□□ -1.82
VPS41-208ENST00000448833 HIGD1BQ9P298 99 aa3.7□□□□□ -1.82
VPS41-208ENST00000448833 H3BMG7 143 aa3.69□□□□□ -1.82
VPS41-208ENST00000448833 H3BUT2 72 aa3.69□□□□□ -1.82
VPS41-208ENST00000448833 HSD52Q0P140 79 aa3.69□□□□□ -1.82
VPS41-208ENST00000448833 BATFQ16520 125 aa3.69□□□□□ -1.82
VPS41-208ENST00000448833 C20orf166-AS1Q96NR2 134 aa3.68□□□□□ -1.82
VPS41-208ENST00000448833 PRO1854Q9UHT4 67 aa3.68□□□□□ -1.82
VPS41-208ENST00000448833 A8MUU9 505 aa3.67□□□□□ -1.82
VPS41-208ENST00000448833 K7ERU9 68 aa3.67□□□□□ -1.82
VPS41-208ENST00000448833 FABP2P12104 132 aa3.67□□□□□ -1.82
VPS41-208ENST00000448833 SIGMAR1Q99720 223 aa3.67□□□□□ -1.82
VPS41-208ENST00000448833 A0A087WSZ3 146 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 DNAL4O96015 105 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 COL5A1-AS1Q5SY13 56 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 C2orf91Q6ZV80 131 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 CEND1Q8N111 149 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 SMIM20Q8N5G0 67 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 PRO0628Q9UI54 55 aa3.66□□□□□ -1.82
VPS41-208ENST00000448833 FLGP20930 4061 aaPredicted RBP3.66□□□□□ -1.82
VPS41-208ENST00000448833 TRBV7-4A0A0J9YYF1 115 aa3.65□□□□□ -1.83
VPS41-208ENST00000448833 TMEM256-PLSCR3K7ERE1 68 aa3.65□□□□□ -1.83
VPS41-208ENST00000448833 COX6CP09669 75 aa3.65□□□□□ -1.83
VPS41-208ENST00000448833 LINC00313P59037 77 aa3.65□□□□□ -1.83
VPS41-208ENST00000448833 ANKRD29Q8N6D5 301 aa3.65□□□□□ -1.83
VPS41-208ENST00000448833 FAM218AQ96MZ4 157 aa3.64□□□□□ -1.83
VPS41-208ENST00000448833 ORMDL1Q9P0S3 153 aa3.64□□□□□ -1.83
VPS41-208ENST00000448833 IGKV4-1P06312 121 aa3.63□□□□□ -1.83
VPS41-208ENST00000448833 RBM12B-AS1Q9P1G2 102 aa3.63□□□□□ -1.83
VPS41-208ENST00000448833 PSMB2P49721 201 aa3.62□□□□□ -1.83
VPS41-208ENST00000448833 LYRM7Q5U5X0 104 aa3.62□□□□□ -1.83
VPS41-208ENST00000448833 FAM236DA0A1B0GTK5 79 aa3.61□□□□□ -1.83
VPS41-208ENST00000448833 A0A1W2PNM2 257 aa3.61□□□□□ -1.83
VPS41-208ENST00000448833 TRACP01848 142 aa3.61□□□□□ -1.83
VPS41-208ENST00000448833 FAM236CP0DP71 79 aa3.61□□□□□ -1.83
VPS41-208ENST00000448833 DSCR10P59022 87 aa3.61□□□□□ -1.83
VPS41-208ENST00000448833 CCKP06307 115 aa3.6□□□□□ -1.83
VPS41-208ENST00000448833 FXYD2P54710 66 aa3.6□□□□□ -1.83
VPS41-208ENST00000448833 C4orf26Q17RF5 130 aa3.6□□□□□ -1.83
VPS41-208ENST00000448833 KRTAP15-1Q3LI76 137 aa3.6□□□□□ -1.83
VPS41-208ENST00000448833 C8orf87E5RJ46 101 aa3.58□□□□□ -1.84
VPS41-208ENST00000448833 J3KT08 172 aa3.58□□□□□ -1.84
VPS41-208ENST00000448833 RPS28P62857 69 aaKnown RBP3.58□□□□□ -1.84
VPS41-208ENST00000448833 DSCR8Q96T75 97 aa3.58□□□□□ -1.84
VPS41-208ENST00000448833 LINC00472Q9H8W2 130 aa3.58□□□□□ -1.84
VPS41-208ENST00000448833 IGHV6-1A0A0B4J1U7 121 aa3.57□□□□□ -1.84
VPS41-208ENST00000448833 KRTAP16-1A8MUX0 517 aa3.57□□□□□ -1.84
VPS41-208ENST00000448833 K7ERJ3 54 aa3.57□□□□□ -1.84
VPS41-208ENST00000448833 RBM3P98179 157 aaKnown RBP3.57□□□□□ -1.84
VPS41-208ENST00000448833 GTF2H5Q6ZYL4 71 aa3.57□□□□□ -1.84
VPS41-208ENST00000448833 TAX1BP3O14907 124 aa3.56□□□□□ -1.84
VPS41-208ENST00000448833 SCGB1C2P0DMR2 95 aa3.56□□□□□ -1.84
VPS41-208ENST00000448833 A0A1B0GVX0 72 aa3.55□□□□□ -1.84
VPS41-208ENST00000448833 A0A1B0GW54 56 aa3.55□□□□□ -1.84
VPS41-208ENST00000448833 A0A1W2PPM0 123 aa3.55□□□□□ -1.84
VPS41-208ENST00000448833 NDUFB1O75438 58 aa3.55□□□□□ -1.84
VPS41-208ENST00000448833 DEFB116Q30KQ4 102 aa3.55□□□□□ -1.84
VPS41-208ENST00000448833 FAM240AA0A1B0GVK7 77 aa3.54□□□□□ -1.84
VPS41-208ENST00000448833 C9JAW5 83 aa3.54□□□□□ -1.84
VPS41-208ENST00000448833 MPLKIPQ8TAP9 179 aa3.54□□□□□ -1.84
VPS41-208ENST00000448833 SPCS1Q9Y6A9 102 aa3.54□□□□□ -1.84
VPS41-208ENST00000448833 HRES1P13985 223 aa3.53□□□□□ -1.84
VPS41-208ENST00000448833 NOTCH2NLQ7Z3S9 236 aa3.53□□□□□ -1.84
VPS41-208ENST00000448833 JMJD7-PLA2G4BH0Y9G9 81 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 K7EP34 96 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 BAALC-AS2P0C853 105 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 PDE6GP18545 87 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 ATXN8Q156A1 80 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 ZCCHC13Q8WW36 166 aaKnown RBP3.52□□□□□ -1.85
VPS41-208ENST00000448833 NAA38Q9BRA0 125 aaKnown RBP3.52□□□□□ -1.85
VPS41-208ENST00000448833 LINC00846Q9NV44 126 aa3.52□□□□□ -1.85
VPS41-208ENST00000448833 KRTAP10-10P60014 251 aa3.51□□□□□ -1.85
VPS41-208ENST00000448833 Q6ZQT0 140 aa3.51□□□□□ -1.85
VPS41-208ENST00000448833 MT2AP02795 61 aa3.5□□□□□ -1.85
VPS41-208ENST00000448833 SPINK7P58062 85 aa3.5□□□□□ -1.85
VPS41-208ENST00000448833 Q6ZVQ6 151 aa3.5□□□□□ -1.85
VPS41-208ENST00000448833 Q8N9P0 234 aaPredicted RBP3.5□□□□□ -1.85
VPS41-208ENST00000448833 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
VPS41-208ENST00000448833 USH2AO75445 5202 aa3.49□□□□□ -1.85
VPS41-208ENST00000448833 LOC110117498A0A087WWA1 95 aa3.48□□□□□ -1.85
VPS41-208ENST00000448833 A8MWP4 228 aa3.48□□□□□ -1.85
VPS41-208ENST00000448833 F8W1H4 67 aa3.48□□□□□ -1.85
VPS41-208ENST00000448833 SSPOA2VEC9 5147 aa3.47□□□□□ -1.85
VPS41-208ENST00000448833 J3QR89 54 aa3.46□□□□□ -1.86
VPS41-208ENST00000448833 MT1FP04733 61 aa3.46□□□□□ -1.86
VPS41-208ENST00000448833 C8orf17Q9NRJ1 99 aa3.46□□□□□ -1.86
VPS41-208ENST00000448833 H3BT86 120 aa3.45□□□□□ -1.86
VPS41-208ENST00000448833 NREPQ16612 68 aa3.45□□□□□ -1.86
VPS41-208ENST00000448833 IGKV3D-7A0A0C4DH55 119 aa3.44□□□□□ -1.86
VPS41-208ENST00000448833 WFDC13Q8IUB5 93 aa3.44□□□□□ -1.86
VPS41-208ENST00000448833 PRR15Q8IV56 129 aa3.44□□□□□ -1.86
VPS41-208ENST00000448833 ANAPC13Q9BS18 74 aa3.43□□□□□ -1.86
VPS41-208ENST00000448833 FCGBPQ9Y6R7 5405 aaPredicted RBP3.42□□□□□ -1.86
VPS41-208ENST00000448833 TMEM254Q8TBM7 123 aa3.42□□□□□ -1.86
VPS41-208ENST00000448833 MRPL34Q9BQ48 92 aaKnown RBP3.42□□□□□ -1.86
VPS41-208ENST00000448833 ETDBQ3ZM63 59 aa3.41□□□□□ -1.86
VPS41-208ENST00000448833 C14orf132Q9NPU4 83 aa3.41□□□□□ -1.86
VPS41-208ENST00000448833 hDV103S1A0JD37 113 aa3.4□□□□□ -1.87
VPS41-208ENST00000448833 NDUFS5O43920 106 aa3.4□□□□□ -1.87
VPS41-208ENST00000448833 H1FX-AS1Q4G0G2 97 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms