RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 J3KT08 172 aa9.48□□□□□ -0.89
LIME1-202ENST00000444951 LCE2AQ5TA79 106 aaPredicted RBP9.47□□□□□ -0.89
LIME1-202ENST00000444951 A0A0U1RQV1 116 aa9.46□□□□□ -0.9
LIME1-202ENST00000444951 IGHV6-1A0A0B4J1U7 121 aa9.45□□□□□ -0.9
LIME1-202ENST00000444951 BPY2O14599 106 aa9.45□□□□□ -0.9
LIME1-202ENST00000444951 KRTAP9-2Q9BYQ4 174 aa9.45□□□□□ -0.9
LIME1-202ENST00000444951 ACYP1P07311 99 aa9.44□□□□□ -0.9
LIME1-202ENST00000444951 DSCR10P59022 87 aa9.43□□□□□ -0.9
LIME1-202ENST00000444951 NDUFB1O75438 58 aa9.42□□□□□ -0.9
LIME1-202ENST00000444951 FAM240AA0A1B0GVK7 77 aa9.41□□□□□ -0.9
LIME1-202ENST00000444951 A0A1B0GVX0 72 aa9.41□□□□□ -0.9
LIME1-202ENST00000444951 A8MWP4 228 aa9.4□□□□□ -0.9
LIME1-202ENST00000444951 J3QR89 54 aa9.4□□□□□ -0.9
LIME1-202ENST00000444951 IGKV3D-7A0A0C4DH55 119 aa9.39□□□□□ -0.91
LIME1-202ENST00000444951 XP32Q5T750 250 aa9.39□□□□□ -0.91
LIME1-202ENST00000444951 LINC00313P59037 77 aa9.38□□□□□ -0.91
LIME1-202ENST00000444951 NOTCH2NLQ7Z3S9 236 aa9.38□□□□□ -0.91
LIME1-202ENST00000444951 Q8N9L7 120 aa9.37□□□□□ -0.91
LIME1-202ENST00000444951 K7EQZ3 153 aa9.36□□□□□ -0.91
LIME1-202ENST00000444951 PRR15Q8IV56 129 aa9.35□□□□□ -0.91
LIME1-202ENST00000444951 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
LIME1-202ENST00000444951 C8orf17Q9NRJ1 99 aa9.32□□□□□ -0.92
LIME1-202ENST00000444951 K7ERU9 68 aa9.29□□□□□ -0.92
LIME1-202ENST00000444951 CXCL6P80162 114 aa9.29□□□□□ -0.92
LIME1-202ENST00000444951 KRTAP16-1A8MUX0 517 aa9.27□□□□□ -0.93
LIME1-202ENST00000444951 MMP24-AS1A0A0U1RRL7 71 aa9.26□□□□□ -0.93
LIME1-202ENST00000444951 LINC00643Q86TS7 51 aa9.26□□□□□ -0.93
LIME1-202ENST00000444951 RPL37P61927 97 aaKnown RBP9.25□□□□□ -0.93
LIME1-202ENST00000444951 KRTAP4-1Q9BYQ7 146 aa9.25□□□□□ -0.93
LIME1-202ENST00000444951 ATP5EP2Q5VTU8 51 aa9.24□□□□□ -0.93
LIME1-202ENST00000444951 WFDC13Q8IUB5 93 aa9.24□□□□□ -0.93
LIME1-202ENST00000444951 hDV103S1A0JD37 113 aa9.22□□□□□ -0.93
LIME1-202ENST00000444951 SEC61BP60468 96 aaKnown RBP9.22□□□□□ -0.93
LIME1-202ENST00000444951 Q75L30 129 aa9.22□□□□□ -0.93
LIME1-202ENST00000444951 C20orf166-AS1Q96NR2 134 aa9.22□□□□□ -0.93
LIME1-202ENST00000444951 A8MUU9 505 aa9.21□□□□□ -0.94
LIME1-202ENST00000444951 HIST1H4AP62805 103 aaKnown RBP9.21□□□□□ -0.94
LIME1-202ENST00000444951 PCOTHQ58A44 107 aa9.21□□□□□ -0.94
LIME1-202ENST00000444951 CASC2Q6XLA1 102 aa9.2□□□□□ -0.94
LIME1-202ENST00000444951 KRTAP9-6A0A140TA67 174 aa9.19□□□□□ -0.94
LIME1-202ENST00000444951 TMEM254Q8TBM7 123 aa9.19□□□□□ -0.94
LIME1-202ENST00000444951 HCG22E2RYF7 251 aa9.18□□□□□ -0.94
LIME1-202ENST00000444951 ATP11AUNQ6ZP68 121 aa9.18□□□□□ -0.94
LIME1-202ENST00000444951 MRPL34Q9BQ48 92 aaKnown RBP9.18□□□□□ -0.94
LIME1-202ENST00000444951 NDUFS5O43920 106 aa9.17□□□□□ -0.94
LIME1-202ENST00000444951 Q8N9P0 234 aaPredicted RBP9.13□□□□□ -0.95
LIME1-202ENST00000444951 A0A087WVE0 104 aa9.12□□□□□ -0.95
LIME1-202ENST00000444951 MT-ATP8P03928 68 aa9.08□□□□□ -0.96
LIME1-202ENST00000444951 ZCCHC13Q8WW36 166 aaKnown RBP9.06□□□□□ -0.96
LIME1-202ENST00000444951 LCE2CQ5TA81 110 aa9.03□□□□□ -0.96
LIME1-202ENST00000444951 KRTAP19-2Q3LHN2 52 aa9□□□□□ -0.97
LIME1-202ENST00000444951 LCE2DQ5TA82 110 aaPredicted RBP9□□□□□ -0.97
LIME1-202ENST00000444951 FSIP2Q5CZC0 6907 aa8.97□□□□□ -0.97
LIME1-202ENST00000444951 Q5W150 140 aa8.97□□□□□ -0.97
LIME1-202ENST00000444951 IMUPQ9GZP8 106 aa8.95□□□□□ -0.98
LIME1-202ENST00000444951 TP53AIP1Q9HCN2 124 aa8.94□□□□□ -0.98
LIME1-202ENST00000444951 SCGB1A1P11684 91 aa8.91□□□□□ -0.98
LIME1-202ENST00000444951 MT1HP80294 61 aa8.91□□□□□ -0.98
LIME1-202ENST00000444951 FLGP20930 4061 aaPredicted RBP8.89□□□□□ -0.99
LIME1-202ENST00000444951 IGKV2D-30A0A075B6S6 120 aa8.89□□□□□ -0.99
LIME1-202ENST00000444951 IGKV2-30P06310 120 aa8.89□□□□□ -0.99
LIME1-202ENST00000444951 SPINK7P58062 85 aa8.89□□□□□ -0.99
LIME1-202ENST00000444951 FAM236AA0A1B0GUQ0 79 aa8.87□□□□□ -0.99
LIME1-202ENST00000444951 FAM236BA0A1B0GV22 79 aa8.87□□□□□ -0.99
LIME1-202ENST00000444951 CRCT1Q9UGL9 99 aa8.87□□□□□ -0.99
LIME1-202ENST00000444951 UQCRQO14949 82 aa8.85□□□□□ -0.99
LIME1-202ENST00000444951 TRAV22A0A0B4J277 110 aa8.83□□□□□ -1
LIME1-202ENST00000444951 OCR1Q9BZK8 76 aa8.83□□□□□ -1
LIME1-202ENST00000444951 H0Y9P7 68 aa8.81□□□□□ -1
LIME1-202ENST00000444951 C7orf65Q6ZTY9 151 aa8.81□□□□□ -1
LIME1-202ENST00000444951 HRES1P13985 223 aa8.79□□□□□ -1
LIME1-202ENST00000444951 LORP23490 312 aaPredicted RBP8.78□□□□□ -1
LIME1-202ENST00000444951 KRTAP10-6P60371 365 aaPredicted RBP8.77□□□□□ -1.01
LIME1-202ENST00000444951 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1.01
LIME1-202ENST00000444951 FAM236DA0A1B0GTK5 79 aa8.74□□□□□ -1.01
LIME1-202ENST00000444951 FAM236CP0DP71 79 aa8.74□□□□□ -1.01
LIME1-202ENST00000444951 RBM12B-AS1Q9P1G2 102 aa8.74□□□□□ -1.01
LIME1-202ENST00000444951 ATOX1O00244 68 aa8.73□□□□□ -1.01
LIME1-202ENST00000444951 MP68P56378 58 aa8.73□□□□□ -1.01
LIME1-202ENST00000444951 C1orf64Q8NEQ6 169 aa8.72□□□□□ -1.01
LIME1-202ENST00000444951 LINC00208Q96KT6 92 aa8.72□□□□□ -1.01
LIME1-202ENST00000444951 LOC101927531A0A1B0GV80 90 aa8.71□□□□□ -1.02
LIME1-202ENST00000444951 C5orf47Q569G3 176 aa8.71□□□□□ -1.02
LIME1-202ENST00000444951 SMIM20Q8N5G0 67 aa8.71□□□□□ -1.02
LIME1-202ENST00000444951 TRAV7A0A075B6U4 112 aa8.7□□□□□ -1.02
LIME1-202ENST00000444951 CYP4F30PQ9H0H9 118 aa8.7□□□□□ -1.02
LIME1-202ENST00000444951 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
LIME1-202ENST00000444951 C4orf26Q17RF5 130 aa8.66□□□□□ -1.02
LIME1-202ENST00000444951 M0R2T5 61 aa8.65□□□□□ -1.02
LIME1-202ENST00000444951 H3BPC8 53 aa8.61□□□□□ -1.03
LIME1-202ENST00000444951 SERP2Q8N6R1 65 aa8.6□□□□□ -1.03
LIME1-202ENST00000444951 KLKP1Q107X0 134 aa8.59□□□□□ -1.03
LIME1-202ENST00000444951 SNURFQ9Y675 71 aa8.54□□□□□ -1.04
LIME1-202ENST00000444951 C20orf197Q8N268 126 aa8.53□□□□□ -1.04
LIME1-202ENST00000444951 H1FX-AS1Q4G0G2 97 aa8.51□□□□□ -1.05
LIME1-202ENST00000444951 USH2AO75445 5202 aa8.51□□□□□ -1.05
LIME1-202ENST00000444951 ANAPC13Q9BS18 74 aa8.5□□□□□ -1.05
LIME1-202ENST00000444951 KRTAP3-1Q9BYR8 98 aa8.49□□□□□ -1.05
LIME1-202ENST00000444951 COX7CP15954 63 aa8.48□□□□□ -1.05
LIME1-202ENST00000444951 SSPOA2VEC9 5147 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms