RNA–Protein interactions for RNA: ENST00000443617.6

HERC1-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC1, Length 15,137 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-201ENST00000443617 NOTCH2NLQ7Z3S9 236 aa3.03□□□□□ -1.93
HERC1-201ENST00000443617 Q5W150 140 aa3.02□□□□□ -1.93
HERC1-201ENST00000443617 RTL8CO15255 209 aa3.02□□□□□ -1.93
HERC1-201ENST00000443617 RELNP78509 3460 aa3.01□□□□□ -1.93
HERC1-201ENST00000443617 WWC2-AS2Q96NR7 200 aa3.01□□□□□ -1.93
HERC1-201ENST00000443617 Q96NJ1 140 aa3.01□□□□□ -1.93
HERC1-201ENST00000443617 IGLV7-43P04211 117 aa3.01□□□□□ -1.93
HERC1-201ENST00000443617 ASPMQ8IZT6 3477 aa3□□□□□ -1.93
HERC1-201ENST00000443617 KRTAP11-1Q8IUC1 163 aa3□□□□□ -1.93
HERC1-201ENST00000443617 TRRAPQ9Y4A5 3859 aa3□□□□□ -1.93
HERC1-201ENST00000443617 LINC00483Q53H64 154 aa2.99□□□□□ -1.93
HERC1-201ENST00000443617 VPS13CQ709C8 3753 aa2.99□□□□□ -1.93
HERC1-201ENST00000443617 SSBP3-AS1Q7Z2R9 100 aa2.99□□□□□ -1.93
HERC1-201ENST00000443617 ZNF861PO60384 105 aa2.99□□□□□ -1.93
HERC1-201ENST00000443617 Q8N1X5 172 aa2.97□□□□□ -1.93
HERC1-201ENST00000443617 SPINT4Q6UDR6 99 aa2.96□□□□□ -1.94
HERC1-201ENST00000443617 A0A1B0GU33 70 aa2.96□□□□□ -1.94
HERC1-201ENST00000443617 NBPF19A0A087WUL8 3843 aa2.95□□□□□ -1.94
HERC1-201ENST00000443617 FBN1P35555 2871 aaKnown RBP2.95□□□□□ -1.94
HERC1-201ENST00000443617 NBDYA0A0U1RRE5 68 aa2.95□□□□□ -1.94
HERC1-201ENST00000443617 KRTAP1-5Q9BYS1 174 aa2.94□□□□□ -1.94
HERC1-201ENST00000443617 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.94□□□□□ -1.94
HERC1-201ENST00000443617 ROMO1P60602 79 aa2.94□□□□□ -1.94
HERC1-201ENST00000443617 KRTAP25-1Q3LHN0 102 aa2.94□□□□□ -1.94
HERC1-201ENST00000443617 KRTAP13-1Q8IUC0 172 aa2.94□□□□□ -1.94
HERC1-201ENST00000443617 PSORS1C2Q9UIG4 136 aa2.93□□□□□ -1.94
HERC1-201ENST00000443617 SPACA4Q8TDM5 124 aa2.93□□□□□ -1.94
HERC1-201ENST00000443617 CUBNO60494 3623 aa2.92□□□□□ -1.94
HERC1-201ENST00000443617 BSNQ9UPA5 3926 aa2.91□□□□□ -1.94
HERC1-201ENST00000443617 PANO1I0J062 215 aa2.91□□□□□ -1.94
HERC1-201ENST00000443617 CRIPTQ9P021 101 aa2.9□□□□□ -1.94
HERC1-201ENST00000443617 OTOGQ6ZRI0 2925 aa2.9□□□□□ -1.94
HERC1-201ENST00000443617 LUZP6Q538Z0 58 aa2.9□□□□□ -1.94
HERC1-201ENST00000443617 KRTAP13-3Q3SY46 172 aa2.9□□□□□ -1.95
HERC1-201ENST00000443617 FBN3Q75N90 2809 aa2.89□□□□□ -1.95
HERC1-201ENST00000443617 LINC00304Q8N9R0 145 aa2.89□□□□□ -1.95
HERC1-201ENST00000443617 A0A087WTM6 91 aa2.88□□□□□ -1.95
HERC1-201ENST00000443617 H1FX-AS1Q4G0G2 97 aa2.88□□□□□ -1.95
HERC1-201ENST00000443617 APLNQ9ULZ1 77 aa2.88□□□□□ -1.95
HERC1-201ENST00000443617 SEC61BP60468 96 aaKnown RBP2.87□□□□□ -1.95
HERC1-201ENST00000443617 COL7A1Q02388 2944 aa2.87□□□□□ -1.95
HERC1-201ENST00000443617 TYMSOSQ8TAI1 123 aa2.87□□□□□ -1.95
HERC1-201ENST00000443617 A8MUU9 505 aa2.87□□□□□ -1.95
HERC1-201ENST00000443617 M0R2T5 61 aa2.87□□□□□ -1.95
HERC1-201ENST00000443617 ALMS1Q8TCU4 4167 aa2.86□□□□□ -1.95
HERC1-201ENST00000443617 A0A0D9SG42 100 aa2.86□□□□□ -1.95
HERC1-201ENST00000443617 Q6ZSA8 131 aa2.85□□□□□ -1.95
HERC1-201ENST00000443617 KRTAP16-1A8MUX0 517 aa2.85□□□□□ -1.95
HERC1-201ENST00000443617 KRTAP24-1Q3LI83 254 aa2.84□□□□□ -1.95
HERC1-201ENST00000443617 H0YAA0 97 aa2.84□□□□□ -1.96
HERC1-201ENST00000443617 MUC3AQ02505 3323 aa2.84□□□□□ -1.96
HERC1-201ENST00000443617 A0A0A0MQY5 61 aa2.83□□□□□ -1.96
HERC1-201ENST00000443617 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
HERC1-201ENST00000443617 Q6ZRN7 208 aaPredicted RBP2.8□□□□□ -1.96
HERC1-201ENST00000443617 CSMD3Q7Z407 3707 aa2.8□□□□□ -1.96
HERC1-201ENST00000443617 MEGF8Q7Z7M0 2845 aa2.79□□□□□ -1.96
HERC1-201ENST00000443617 RPL37P61927 97 aaKnown RBP2.78□□□□□ -1.96
HERC1-201ENST00000443617 C9orf92A6NGG3 77 aa2.78□□□□□ -1.96
HERC1-201ENST00000443617 ANK3Q12955 4377 aaKnown RBP2.77□□□□□ -1.97
HERC1-201ENST00000443617 KRTAP13-2Q52LG2 175 aa2.77□□□□□ -1.97
HERC1-201ENST00000443617 P0C880 135 aa2.77□□□□□ -1.97
HERC1-201ENST00000443617 C20orf166-AS1Q96NR2 134 aa2.76□□□□□ -1.97
HERC1-201ENST00000443617 TPRXLQ17RH7 258 aa2.71□□□□□ -1.97
HERC1-201ENST00000443617 KRTAP10-1P60331 282 aa2.71□□□□□ -1.98
HERC1-201ENST00000443617 HECTD4Q9Y4D8 3996 aa2.71□□□□□ -1.98
HERC1-201ENST00000443617 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
HERC1-201ENST00000443617 SMR3BP02814 79 aaPredicted RBP2.7□□□□□ -1.98
HERC1-201ENST00000443617 Q5VSD8 79 aa2.7□□□□□ -1.98
HERC1-201ENST00000443617 C10orf95Q9H7T3 257 aa2.69□□□□□ -1.98
HERC1-201ENST00000443617 KRTAP10-2P60368 255 aa2.69□□□□□ -1.98
HERC1-201ENST00000443617 LYSTQ99698 3801 aa2.69□□□□□ -1.98
HERC1-201ENST00000443617 ZNF469Q96JG9 3925 aaPredicted RBP2.69□□□□□ -1.98
HERC1-201ENST00000443617 S4R3F8 94 aa2.68□□□□□ -1.98
HERC1-201ENST00000443617 KRTAP15-1Q3LI76 137 aa2.68□□□□□ -1.98
HERC1-201ENST00000443617 KRTAP3-1Q9BYR8 98 aa2.67□□□□□ -1.98
HERC1-201ENST00000443617 DNAH3Q8TD57 4116 aa2.66□□□□□ -1.98
HERC1-201ENST00000443617 RPS29P62273 56 aaKnown RBP2.66□□□□□ -1.98
HERC1-201ENST00000443617 KRTAP1-4P0C5Y4 121 aa2.65□□□□□ -1.98
HERC1-201ENST00000443617 CSMD2Q7Z408 3487 aa2.63□□□□□ -1.99
HERC1-201ENST00000443617 PLAC4Q8WY50 150 aa2.62□□□□□ -1.99
HERC1-201ENST00000443617 M0QZ58 72 aa2.62□□□□□ -1.99
HERC1-201ENST00000443617 DNAH2Q9P225 4427 aa2.61□□□□□ -1.99
HERC1-201ENST00000443617 KRTAP10-6P60371 365 aaPredicted RBP2.61□□□□□ -1.99
HERC1-201ENST00000443617 KRTAP13-4Q3LI77 160 aa2.6□□□□□ -1.99
HERC1-201ENST00000443617 DNAH1Q9P2D7 4330 aa2.6□□□□□ -1.99
HERC1-201ENST00000443617 ANK2Q01484 3957 aa2.59□□□□□ -2
HERC1-201ENST00000443617 CMYA5Q8N3K9 4069 aa2.59□□□□□ -2
HERC1-201ENST00000443617 KRTAP3-2Q9BYR7 98 aa2.58□□□□□ -2
HERC1-201ENST00000443617 DNAH11Q96DT5 4516 aa2.58□□□□□ -2
HERC1-201ENST00000443617 DNAH7Q8WXX0 4024 aa2.57□□□□□ -2
HERC1-201ENST00000443617 KRTAP12-2P59991 146 aa2.57□□□□□ -2
HERC1-201ENST00000443617 R4GN34 69 aa2.56□□□□□ -2
HERC1-201ENST00000443617 HUWE1Q7Z6Z7 4374 aaKnown RBP2.55□□□□□ -2
HERC1-201ENST00000443617 KRTAP21-3Q3LHN1 58 aa2.54□□□□□ -2
HERC1-201ENST00000443617 XP32Q5T750 250 aa2.53□□□□□ -2
HERC1-201ENST00000443617 KRTAP12-1P59990 96 aa2.53□□□□□ -2
HERC1-201ENST00000443617 KRTAP3-3Q9BYR6 98 aa2.51□□□□□ -2.01
HERC1-201ENST00000443617 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
HERC1-201ENST00000443617 VPS13BQ7Z7G8 4022 aa2.49□□□□□ -2.01
HERC1-201ENST00000443617 DNAH10Q8IVF4 4471 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms