RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 NOTCH2NLQ7Z3S9 236 aa9.87□□□□□ -0.83
SHH-204ENST00000441114 A0A1B0GW54 56 aa9.86□□□□□ -0.83
SHH-204ENST00000441114 C20orf166-AS1Q96NR2 134 aa9.86□□□□□ -0.83
SHH-204ENST00000441114 A8MUU9 505 aa9.85□□□□□ -0.83
SHH-204ENST00000441114 J3KT08 172 aa9.85□□□□□ -0.83
SHH-204ENST00000441114 A0A1B0GVX0 72 aa9.84□□□□□ -0.83
SHH-204ENST00000441114 K7EP34 96 aa9.83□□□□□ -0.84
SHH-204ENST00000441114 SMCPP49901 116 aaPredicted RBP9.83□□□□□ -0.84
SHH-204ENST00000441114 KRTAP16-1A8MUX0 517 aa9.82□□□□□ -0.84
SHH-204ENST00000441114 LCE2AQ5TA79 106 aaPredicted RBP9.82□□□□□ -0.84
SHH-204ENST00000441114 NREPQ16612 68 aa9.81□□□□□ -0.84
SHH-204ENST00000441114 C8orf87E5RJ46 101 aa9.79□□□□□ -0.84
SHH-204ENST00000441114 NDUFB1O75438 58 aa9.79□□□□□ -0.84
SHH-204ENST00000441114 KRTAP9-6A0A140TA67 174 aa9.78□□□□□ -0.84
SHH-204ENST00000441114 PRO0461Q9UI25 63 aa9.77□□□□□ -0.85
SHH-204ENST00000441114 GTF2H5Q6ZYL4 71 aa9.75□□□□□ -0.85
SHH-204ENST00000441114 A8MWP4 228 aa9.74□□□□□ -0.85
SHH-204ENST00000441114 KRTAP19-2Q3LHN2 52 aa9.74□□□□□ -0.85
SHH-204ENST00000441114 LCE2CQ5TA81 110 aa9.74□□□□□ -0.85
SHH-204ENST00000441114 IGKV3D-7A0A0C4DH55 119 aa9.72□□□□□ -0.85
SHH-204ENST00000441114 C8orf17Q9NRJ1 99 aa9.7□□□□□ -0.86
SHH-204ENST00000441114 COX6B2Q6YFQ2 88 aa9.69□□□□□ -0.86
SHH-204ENST00000441114 PRR15Q8IV56 129 aa9.66□□□□□ -0.86
SHH-204ENST00000441114 BPY2O14599 106 aa9.65□□□□□ -0.86
SHH-204ENST00000441114 Q6ZVQ6 151 aa9.65□□□□□ -0.86
SHH-204ENST00000441114 F8W1H4 67 aa9.64□□□□□ -0.87
SHH-204ENST00000441114 K7EQZ3 153 aa9.62□□□□□ -0.87
SHH-204ENST00000441114 MT1HP80294 61 aa9.61□□□□□ -0.87
SHH-204ENST00000441114 ETDBQ3ZM63 59 aa9.6□□□□□ -0.87
SHH-204ENST00000441114 MMP24-AS1A0A0U1RRL7 71 aa9.59□□□□□ -0.87
SHH-204ENST00000441114 Q8N9P0 234 aaPredicted RBP9.59□□□□□ -0.87
SHH-204ENST00000441114 LINC00846Q9NV44 126 aa9.59□□□□□ -0.87
SHH-204ENST00000441114 ZCCHC13Q8WW36 166 aaKnown RBP9.58□□□□□ -0.88
SHH-204ENST00000441114 Q8N9L7 120 aa9.56□□□□□ -0.88
SHH-204ENST00000441114 UBL5Q9BZL1 73 aa9.56□□□□□ -0.88
SHH-204ENST00000441114 TMEM254Q8TBM7 123 aa9.55□□□□□ -0.88
SHH-204ENST00000441114 MRPL34Q9BQ48 92 aaKnown RBP9.55□□□□□ -0.88
SHH-204ENST00000441114 hDV103S1A0JD37 113 aa9.54□□□□□ -0.88
SHH-204ENST00000441114 M0R2T5 61 aa9.52□□□□□ -0.89
SHH-204ENST00000441114 NDUFS5O43920 106 aa9.51□□□□□ -0.89
SHH-204ENST00000441114 WFDC13Q8IUB5 93 aa9.5□□□□□ -0.89
SHH-204ENST00000441114 FAM236DA0A1B0GTK5 79 aa9.47□□□□□ -0.89
SHH-204ENST00000441114 FAM236CP0DP71 79 aa9.47□□□□□ -0.89
SHH-204ENST00000441114 HRES1P13985 223 aa9.47□□□□□ -0.89
SHH-204ENST00000441114 SPINK7P58062 85 aa9.46□□□□□ -0.9
SHH-204ENST00000441114 CASC2Q6XLA1 102 aa9.46□□□□□ -0.9
SHH-204ENST00000441114 RBM12B-AS1Q9P1G2 102 aa9.45□□□□□ -0.9
SHH-204ENST00000441114 A0A1B0GV90 55 aa9.42□□□□□ -0.9
SHH-204ENST00000441114 MPLKIPQ8TAP9 179 aa9.4□□□□□ -0.9
SHH-204ENST00000441114 HCG22E2RYF7 251 aa9.39□□□□□ -0.91
SHH-204ENST00000441114 KRTAP10-6P60371 365 aaPredicted RBP9.39□□□□□ -0.91
SHH-204ENST00000441114 FLGP20930 4061 aaPredicted RBP9.39□□□□□ -0.91
SHH-204ENST00000441114 LORP23490 312 aaPredicted RBP9.35□□□□□ -0.91
SHH-204ENST00000441114 CXCL6P80162 114 aa9.35□□□□□ -0.91
SHH-204ENST00000441114 Q5W150 140 aa9.34□□□□□ -0.91
SHH-204ENST00000441114 ACYP1P07311 99 aa9.33□□□□□ -0.92
SHH-204ENST00000441114 IGKV2D-30A0A075B6S6 120 aa9.3□□□□□ -0.92
SHH-204ENST00000441114 IGKV2-30P06310 120 aa9.3□□□□□ -0.92
SHH-204ENST00000441114 FAM240AA0A1B0GVK7 77 aa9.27□□□□□ -0.93
SHH-204ENST00000441114 C7orf65Q6ZTY9 151 aa9.24□□□□□ -0.93
SHH-204ENST00000441114 CRCT1Q9UGL9 99 aa9.24□□□□□ -0.93
SHH-204ENST00000441114 LCE2DQ5TA82 110 aaPredicted RBP9.23□□□□□ -0.93
SHH-204ENST00000441114 HIST1H4AP62805 103 aaKnown RBP9.19□□□□□ -0.94
SHH-204ENST00000441114 ATP5EP2Q5VTU8 51 aa9.19□□□□□ -0.94
SHH-204ENST00000441114 FSIP2Q5CZC0 6907 aa9.19□□□□□ -0.94
SHH-204ENST00000441114 TP53AIP1Q9HCN2 124 aa9.16□□□□□ -0.94
SHH-204ENST00000441114 LINC00643Q86TS7 51 aa9.13□□□□□ -0.95
SHH-204ENST00000441114 KRTAP9-8Q9BYQ0 159 aa9.12□□□□□ -0.95
SHH-204ENST00000441114 C4orf26Q17RF5 130 aa9.1□□□□□ -0.95
SHH-204ENST00000441114 H1FX-AS1Q4G0G2 97 aa9.09□□□□□ -0.95
SHH-204ENST00000441114 A0A087WVE0 104 aa9.07□□□□□ -0.96
SHH-204ENST00000441114 J3QR89 54 aa9.07□□□□□ -0.96
SHH-204ENST00000441114 MT2AP02795 61 aa9.04□□□□□ -0.96
SHH-204ENST00000441114 TRAV22A0A0B4J277 110 aa9.01□□□□□ -0.97
SHH-204ENST00000441114 UQCRQO14949 82 aa8.97□□□□□ -0.97
SHH-204ENST00000441114 MT1FP04733 61 aa8.97□□□□□ -0.97
SHH-204ENST00000441114 KRTAP10-10P60014 251 aa8.97□□□□□ -0.97
SHH-204ENST00000441114 C1orf64Q8NEQ6 169 aa8.96□□□□□ -0.98
SHH-204ENST00000441114 CYP4F30PQ9H0H9 118 aa8.96□□□□□ -0.98
SHH-204ENST00000441114 H0Y9P7 68 aa8.94□□□□□ -0.98
SHH-204ENST00000441114 KRTAP3-1Q9BYR8 98 aa8.93□□□□□ -0.98
SHH-204ENST00000441114 LOC101927531A0A1B0GV80 90 aa8.92□□□□□ -0.98
SHH-204ENST00000441114 ATOX1O00244 68 aa8.88□□□□□ -0.99
SHH-204ENST00000441114 S4R3F8 94 aa8.86□□□□□ -0.99
SHH-204ENST00000441114 C5orf47Q569G3 176 aa8.84□□□□□ -0.99
SHH-204ENST00000441114 KRTAP9-3Q9BYQ3 159 aa8.83□□□□□ -1
SHH-204ENST00000441114 OCR1Q9BZK8 76 aa8.83□□□□□ -1
SHH-204ENST00000441114 K7ERU9 68 aa8.82□□□□□ -1
SHH-204ENST00000441114 LINC00208Q96KT6 92 aa8.82□□□□□ -1
SHH-204ENST00000441114 SCGB1A1P11684 91 aa8.8□□□□□ -1
SHH-204ENST00000441114 MP68P56378 58 aa8.79□□□□□ -1
SHH-204ENST00000441114 LCA10Q71F78 164 aa8.79□□□□□ -1
SHH-204ENST00000441114 MT-ATP8P03928 68 aa8.76□□□□□ -1.01
SHH-204ENST00000441114 LCE2BO14633 110 aa8.75□□□□□ -1.01
SHH-204ENST00000441114 KLKP1Q107X0 134 aa8.74□□□□□ -1.01
SHH-204ENST00000441114 CSAG1Q6PB30 78 aa8.74□□□□□ -1.01
SHH-204ENST00000441114 KRTAP9-7A8MTY7 169 aa8.73□□□□□ -1.01
SHH-204ENST00000441114 IMUPQ9GZP8 106 aa8.71□□□□□ -1.02
SHH-204ENST00000441114 USH2AO75445 5202 aa8.67□□□□□ -1.02
SHH-204ENST00000441114 FAM236AA0A1B0GUQ0 79 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms