RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 Q8N9P0 234 aaPredicted RBP7.67□□□□□ -1.18
PTCH1-207ENST00000429896 Q1T7F1 81 aa7.67□□□□□ -1.18
PTCH1-207ENST00000429896 KRTAP11-1Q8IUC1 163 aa7.67□□□□□ -1.18
PTCH1-207ENST00000429896 KRTAP7-1Q8IUC3 87 aa7.66□□□□□ -1.18
PTCH1-207ENST00000429896 NF1P21359 2839 aa7.65□□□□□ -1.19
PTCH1-207ENST00000429896 SPENQ96T58 3664 aaKnown RBP7.65□□□□□ -1.19
PTCH1-207ENST00000429896 SPANXA2-OT1Q8N9U9 137 aa7.64□□□□□ -1.19
PTCH1-207ENST00000429896 PRAC1Q96KF2 57 aa7.63□□□□□ -1.19
PTCH1-207ENST00000429896 CYSTM1Q9H1C7 97 aa7.62□□□□□ -1.19
PTCH1-207ENST00000429896 A0A087X002 238 aa7.62□□□□□ -1.19
PTCH1-207ENST00000429896 ZCCHC13Q8WW36 166 aaKnown RBP7.6□□□□□ -1.19
PTCH1-207ENST00000429896 CSMD1Q96PZ7 3565 aa7.6□□□□□ -1.19
PTCH1-207ENST00000429896 FP248Q71RG6 208 aaPredicted RBP7.59□□□□□ -1.19
PTCH1-207ENST00000429896 CSAG1Q6PB30 78 aa7.58□□□□□ -1.2
PTCH1-207ENST00000429896 SEC61BP60468 96 aaKnown RBP7.56□□□□□ -1.2
PTCH1-207ENST00000429896 R4GN34 69 aa7.56□□□□□ -1.2
PTCH1-207ENST00000429896 FBN1P35555 2871 aaKnown RBP7.55□□□□□ -1.2
PTCH1-207ENST00000429896 STAB2Q8WWQ8 2551 aa7.55□□□□□ -1.2
PTCH1-207ENST00000429896 MMP24-AS1A0A0U1RRL7 71 aa7.54□□□□□ -1.2
PTCH1-207ENST00000429896 KRTAP13-1Q8IUC0 172 aa7.54□□□□□ -1.2
PTCH1-207ENST00000429896 SPINK7P58062 85 aa7.53□□□□□ -1.2
PTCH1-207ENST00000429896 Q5W150 140 aa7.53□□□□□ -1.2
PTCH1-207ENST00000429896 LINC00472Q9H8W2 130 aa7.53□□□□□ -1.2
PTCH1-207ENST00000429896 A0A1B0GVY2 172 aa7.51□□□□□ -1.21
PTCH1-207ENST00000429896 Q5XG85 94 aa7.5□□□□□ -1.21
PTCH1-207ENST00000429896 RPS29P62273 56 aaKnown RBP7.5□□□□□ -1.21
PTCH1-207ENST00000429896 TENM1Q9UKZ4 2725 aa7.5□□□□□ -1.21
PTCH1-207ENST00000429896 KRTAP13-2Q52LG2 175 aa7.48□□□□□ -1.21
PTCH1-207ENST00000429896 DMAC1Q96GE9 116 aa7.48□□□□□ -1.21
PTCH1-207ENST00000429896 ZFHX3Q15911 3703 aa7.47□□□□□ -1.21
PTCH1-207ENST00000429896 M0QZ58 72 aa7.47□□□□□ -1.21
PTCH1-207ENST00000429896 Q75L30 129 aa7.46□□□□□ -1.22
PTCH1-207ENST00000429896 CSMD2Q7Z408 3487 aa7.44□□□□□ -1.22
PTCH1-207ENST00000429896 SPATA8Q6RVD6 105 aa7.43□□□□□ -1.22
PTCH1-207ENST00000429896 ADM2Q7Z4H4 148 aa7.42□□□□□ -1.22
PTCH1-207ENST00000429896 AKAP9Q99996 3911 aa7.39□□□□□ -1.23
PTCH1-207ENST00000429896 ASB16-AS1Q495Z4 193 aa7.38□□□□□ -1.23
PTCH1-207ENST00000429896 CELSR1Q9NYQ6 3014 aa7.38□□□□□ -1.23
PTCH1-207ENST00000429896 TENM2Q9NT68 2774 aa7.38□□□□□ -1.23
PTCH1-207ENST00000429896 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
PTCH1-207ENST00000429896 H1FX-AS1Q4G0G2 97 aa7.37□□□□□ -1.23
PTCH1-207ENST00000429896 H3BS24 57 aa7.37□□□□□ -1.23
PTCH1-207ENST00000429896 Q5VV11 94 aa7.37□□□□□ -1.23
PTCH1-207ENST00000429896 PLAC4Q8WY50 150 aa7.36□□□□□ -1.23
PTCH1-207ENST00000429896 TENM3Q9P273 2699 aa7.33□□□□□ -1.24
PTCH1-207ENST00000429896 VWFP04275 2813 aa7.33□□□□□ -1.24
PTCH1-207ENST00000429896 KRTAP29-1A8MX34 341 aaPredicted RBP7.32□□□□□ -1.24
PTCH1-207ENST00000429896 KRTAP1-4P0C5Y4 121 aa7.32□□□□□ -1.24
PTCH1-207ENST00000429896 ROMO1P60602 79 aa7.31□□□□□ -1.24
PTCH1-207ENST00000429896 RPL37P61927 97 aaKnown RBP7.29□□□□□ -1.24
PTCH1-207ENST00000429896 A0A0A0MQY5 61 aa7.29□□□□□ -1.24
PTCH1-207ENST00000429896 SVEP1Q4LDE5 3571 aa7.28□□□□□ -1.24
PTCH1-207ENST00000429896 NOTCH2NLQ7Z3S9 236 aa7.23□□□□□ -1.25
PTCH1-207ENST00000429896 TRRAPQ9Y4A5 3859 aa7.2□□□□□ -1.26
PTCH1-207ENST00000429896 HUWE1Q7Z6Z7 4374 aaKnown RBP7.18□□□□□ -1.26
PTCH1-207ENST00000429896 A8MU10 97 aa7.18□□□□□ -1.26
PTCH1-207ENST00000429896 FLG2Q5D862 2391 aaPredicted RBP7.17□□□□□ -1.26
PTCH1-207ENST00000429896 C20orf166-AS1Q96NR2 134 aa7.14□□□□□ -1.27
PTCH1-207ENST00000429896 FBN3Q75N90 2809 aa7.14□□□□□ -1.27
PTCH1-207ENST00000429896 ZNF469Q96JG9 3925 aaPredicted RBP7.13□□□□□ -1.27
PTCH1-207ENST00000429896 VPS13CQ709C8 3753 aa7.1□□□□□ -1.27
PTCH1-207ENST00000429896 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
PTCH1-207ENST00000429896 A8MUU9 505 aa7.09□□□□□ -1.27
PTCH1-207ENST00000429896 KRTAP10-8P60410 259 aa7.09□□□□□ -1.27
PTCH1-207ENST00000429896 PKD1L1Q8TDX9 2849 aa7.09□□□□□ -1.28
PTCH1-207ENST00000429896 DMBT1Q9UGM3 2413 aaPredicted RBP7.08□□□□□ -1.28
PTCH1-207ENST00000429896 TPRXLQ17RH7 258 aa7.07□□□□□ -1.28
PTCH1-207ENST00000429896 XP32Q5T750 250 aa7.05□□□□□ -1.28
PTCH1-207ENST00000429896 TGP01266 2768 aa7.02□□□□□ -1.29
PTCH1-207ENST00000429896 DNAH9Q9NYC9 4486 aa7.01□□□□□ -1.29
PTCH1-207ENST00000429896 KRTAP13-3Q3SY46 172 aa6.96□□□□□ -1.3
PTCH1-207ENST00000429896 C10orf95Q9H7T3 257 aa6.93□□□□□ -1.3
PTCH1-207ENST00000429896 KRTAP25-1Q3LHN0 102 aa6.89□□□□□ -1.31
PTCH1-207ENST00000429896 MEGF8Q7Z7M0 2845 aa6.89□□□□□ -1.31
PTCH1-207ENST00000429896 CUBNO60494 3623 aa6.88□□□□□ -1.31
PTCH1-207ENST00000429896 ANK2Q01484 3957 aa6.88□□□□□ -1.31
PTCH1-207ENST00000429896 NDUFAF8A1L188 74 aa6.87□□□□□ -1.31
PTCH1-207ENST00000429896 KRTAP16-1A8MUX0 517 aa6.86□□□□□ -1.31
PTCH1-207ENST00000429896 DNHD1Q96M86 4753 aa6.81□□□□□ -1.32
PTCH1-207ENST00000429896 A6NN06 94 aa6.8□□□□□ -1.32
PTCH1-207ENST00000429896 TNP1P09430 55 aa6.8□□□□□ -1.32
PTCH1-207ENST00000429896 KRTAP4-5Q9BYR2 181 aa6.78□□□□□ -1.32
PTCH1-207ENST00000429896 KRTAP10-4P60372 401 aaPredicted RBP6.75□□□□□ -1.33
PTCH1-207ENST00000429896 MT1HL1P0DM35 61 aa6.74□□□□□ -1.33
PTCH1-207ENST00000429896 PLECQ15149 4684 aaKnown RBP6.68□□□□□ -1.34
PTCH1-207ENST00000429896 KRTAP10-10P60014 251 aa6.62□□□□□ -1.35
PTCH1-207ENST00000429896 VPS13DQ5THJ4 4388 aa6.62□□□□□ -1.35
PTCH1-207ENST00000429896 CMYA5Q8N3K9 4069 aa6.6□□□□□ -1.35
PTCH1-207ENST00000429896 DNAH3Q8TD57 4116 aa6.6□□□□□ -1.35
PTCH1-207ENST00000429896 DNAH1Q9P2D7 4330 aa6.59□□□□□ -1.35
PTCH1-207ENST00000429896 DNAH11Q96DT5 4516 aa6.57□□□□□ -1.36
PTCH1-207ENST00000429896 PRKDCP78527 4128 aaKnown RBP6.57□□□□□ -1.36
PTCH1-207ENST00000429896 STARD9Q9P2P6 4700 aa6.55□□□□□ -1.36
PTCH1-207ENST00000429896 DNAH5Q8TE73 4624 aa6.54□□□□□ -1.36
PTCH1-207ENST00000429896 COL7A1Q02388 2944 aa6.53□□□□□ -1.36
PTCH1-207ENST00000429896 DNAH10Q8IVF4 4471 aa6.49□□□□□ -1.37
PTCH1-207ENST00000429896 DNAH17Q9UFH2 4485 aa6.47□□□□□ -1.37
PTCH1-207ENST00000429896 H0YAA0 97 aa6.47□□□□□ -1.37
PTCH1-207ENST00000429896 DYNC1H1Q14204 4646 aaKnown RBP6.45□□□□□ -1.38
PTCH1-207ENST00000429896 DYNC2H1Q8NCM8 4307 aaKnown RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms