RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 IGKV2-30P06310 120 aa9.39□□□□□ -0.91
C9orf3-206ENST00000428313 ROMO1P60602 79 aa9.38□□□□□ -0.91
C9orf3-206ENST00000428313 KRTAP25-1Q3LHN0 102 aa9.38□□□□□ -0.91
C9orf3-206ENST00000428313 TENM3Q9P273 2699 aa9.37□□□□□ -0.91
C9orf3-206ENST00000428313 KRTAP1-5Q9BYS1 174 aa9.34□□□□□ -0.91
C9orf3-206ENST00000428313 TENM1Q9UKZ4 2725 aa9.32□□□□□ -0.92
C9orf3-206ENST00000428313 SPINK6Q6UWN8 80 aa9.32□□□□□ -0.92
C9orf3-206ENST00000428313 ANK2Q01484 3957 aa9.31□□□□□ -0.92
C9orf3-206ENST00000428313 A8MUU9 505 aa9.3□□□□□ -0.92
C9orf3-206ENST00000428313 CSMD3Q7Z407 3707 aa9.29□□□□□ -0.92
C9orf3-206ENST00000428313 NSD1Q96L73 2696 aaPredicted RBP9.28□□□□□ -0.92
C9orf3-206ENST00000428313 DNAH10Q8IVF4 4471 aa9.27□□□□□ -0.92
C9orf3-206ENST00000428313 PANO1I0J062 215 aa9.25□□□□□ -0.93
C9orf3-206ENST00000428313 IGLV5-52A0A0A0MRZ9 124 aa9.23□□□□□ -0.93
C9orf3-206ENST00000428313 LY6G6CO95867 125 aa9.23□□□□□ -0.93
C9orf3-206ENST00000428313 ATRQ13535 2644 aa9.23□□□□□ -0.93
C9orf3-206ENST00000428313 IGKV2D-30A0A075B6S6 120 aa9.22□□□□□ -0.93
C9orf3-206ENST00000428313 LYSTQ99698 3801 aa9.21□□□□□ -0.94
C9orf3-206ENST00000428313 LINC00304Q8N9R0 145 aa9.21□□□□□ -0.94
C9orf3-206ENST00000428313 SPACA4Q8TDM5 124 aa9.21□□□□□ -0.94
C9orf3-206ENST00000428313 FBN1P35555 2871 aaKnown RBP9.2□□□□□ -0.94
C9orf3-206ENST00000428313 ANAPC11Q9NYG5 84 aa9.19□□□□□ -0.94
C9orf3-206ENST00000428313 KRTAP24-1Q3LI83 254 aa9.17□□□□□ -0.94
C9orf3-206ENST00000428313 H0YAA0 97 aa9.16□□□□□ -0.94
C9orf3-206ENST00000428313 DNHD1Q96M86 4753 aa9.16□□□□□ -0.94
C9orf3-206ENST00000428313 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.15□□□□□ -0.95
C9orf3-206ENST00000428313 PSORS1C2Q9UIG4 136 aa9.14□□□□□ -0.95
C9orf3-206ENST00000428313 DNAH3Q8TD57 4116 aa9.14□□□□□ -0.95
C9orf3-206ENST00000428313 Q6ZSA8 131 aa9.13□□□□□ -0.95
C9orf3-206ENST00000428313 DNAH9Q9NYC9 4486 aa9.12□□□□□ -0.95
C9orf3-206ENST00000428313 UBE2DNLQ8IWF7 75 aa9.11□□□□□ -0.95
C9orf3-206ENST00000428313 CIRBP-AS1Q8TBR5 109 aa9.11□□□□□ -0.95
C9orf3-206ENST00000428313 KRTAP16-1A8MUX0 517 aa9.11□□□□□ -0.95
C9orf3-206ENST00000428313 P0C880 135 aa9.09□□□□□ -0.95
C9orf3-206ENST00000428313 SSBP3-AS1Q7Z2R9 100 aa9.09□□□□□ -0.95
C9orf3-206ENST00000428313 APLNQ9ULZ1 77 aa9.08□□□□□ -0.96
C9orf3-206ENST00000428313 SPINK1P00995 79 aa9.05□□□□□ -0.96
C9orf3-206ENST00000428313 DNAH8Q96JB1 4490 aa9.05□□□□□ -0.96
C9orf3-206ENST00000428313 CMYA5Q8N3K9 4069 aa9.05□□□□□ -0.96
C9orf3-206ENST00000428313 COL7A1Q02388 2944 aa9.05□□□□□ -0.96
C9orf3-206ENST00000428313 FBN3Q75N90 2809 aa9.02□□□□□ -0.97
C9orf3-206ENST00000428313 Q6ZRN7 208 aaPredicted RBP9.01□□□□□ -0.97
C9orf3-206ENST00000428313 A0A1B0GU33 70 aa9.01□□□□□ -0.97
C9orf3-206ENST00000428313 KRTAP21-3Q3LHN1 58 aa9□□□□□ -0.97
C9orf3-206ENST00000428313 HUWE1Q7Z6Z7 4374 aaKnown RBP9□□□□□ -0.97
C9orf3-206ENST00000428313 NBDYA0A0U1RRE5 68 aa8.98□□□□□ -0.97
C9orf3-206ENST00000428313 NBEAL1Q6ZS30 2694 aa8.98□□□□□ -0.97
C9orf3-206ENST00000428313 H1FX-AS1Q4G0G2 97 aa8.97□□□□□ -0.97
C9orf3-206ENST00000428313 K7ERS5 55 aa8.95□□□□□ -0.98
C9orf3-206ENST00000428313 Q8N1X5 172 aa8.94□□□□□ -0.98
C9orf3-206ENST00000428313 FRAS1Q86XX4 4008 aa8.94□□□□□ -0.98
C9orf3-206ENST00000428313 TYMSOSQ8TAI1 123 aa8.93□□□□□ -0.98
C9orf3-206ENST00000428313 STAB1Q9NY15 2570 aa8.92□□□□□ -0.98
C9orf3-206ENST00000428313 MEGF8Q7Z7M0 2845 aa8.88□□□□□ -0.99
C9orf3-206ENST00000428313 NUPR2A6NF83 97 aa8.87□□□□□ -0.99
C9orf3-206ENST00000428313 CRIPTQ9P021 101 aa8.87□□□□□ -0.99
C9orf3-206ENST00000428313 NOTCH1P46531 2555 aa8.86□□□□□ -0.99
C9orf3-206ENST00000428313 A0A087WTM6 91 aa8.86□□□□□ -0.99
C9orf3-206ENST00000428313 DYNC2H1Q8NCM8 4307 aaKnown RBP8.86□□□□□ -0.99
C9orf3-206ENST00000428313 COL6A5A8TX70 2615 aa8.84□□□□□ -0.99
C9orf3-206ENST00000428313 HECTD4Q9Y4D8 3996 aa8.79□□□□□ -1
C9orf3-206ENST00000428313 SPINT4Q6UDR6 99 aa8.79□□□□□ -1
C9orf3-206ENST00000428313 KRTAP13-2Q52LG2 175 aa8.79□□□□□ -1
C9orf3-206ENST00000428313 DNAH17Q9UFH2 4485 aa8.77□□□□□ -1
C9orf3-206ENST00000428313 FLG2Q5D862 2391 aaPredicted RBP8.77□□□□□ -1
C9orf3-206ENST00000428313 DNAH7Q8WXX0 4024 aa8.75□□□□□ -1.01
C9orf3-206ENST00000428313 C20orf166-AS1Q96NR2 134 aa8.74□□□□□ -1.01
C9orf3-206ENST00000428313 TGP01266 2768 aa8.74□□□□□ -1.01
C9orf3-206ENST00000428313 VPS13DQ5THJ4 4388 aa8.73□□□□□ -1.01
C9orf3-206ENST00000428313 KRTAP15-1Q3LI76 137 aa8.72□□□□□ -1.01
C9orf3-206ENST00000428313 COX6B2Q6YFQ2 88 aa8.72□□□□□ -1.01
C9orf3-206ENST00000428313 NDUFAF8A1L188 74 aa8.7□□□□□ -1.02
C9orf3-206ENST00000428313 TPRXLQ17RH7 258 aa8.69□□□□□ -1.02
C9orf3-206ENST00000428313 STAB2Q8WWQ8 2551 aa8.68□□□□□ -1.02
C9orf3-206ENST00000428313 KRTAP3-1Q9BYR8 98 aa8.68□□□□□ -1.02
C9orf3-206ENST00000428313 PLECQ15149 4684 aaKnown RBP8.66□□□□□ -1.02
C9orf3-206ENST00000428313 RPL37P61927 97 aaKnown RBP8.65□□□□□ -1.03
C9orf3-206ENST00000428313 MGAM2Q2M2H8 2515 aa8.6□□□□□ -1.03
C9orf3-206ENST00000428313 PRKDCP78527 4128 aaKnown RBP8.59□□□□□ -1.03
C9orf3-206ENST00000428313 KRTAP1-4P0C5Y4 121 aa8.56□□□□□ -1.04
C9orf3-206ENST00000428313 A0A0A0MQY5 61 aa8.54□□□□□ -1.04
C9orf3-206ENST00000428313 DNAH2Q9P225 4427 aa8.5□□□□□ -1.05
C9orf3-206ENST00000428313 C10orf95Q9H7T3 257 aa8.49□□□□□ -1.05
C9orf3-206ENST00000428313 DNAH11Q96DT5 4516 aa8.48□□□□□ -1.05
C9orf3-206ENST00000428313 RPS29P62273 56 aaKnown RBP8.47□□□□□ -1.05
C9orf3-206ENST00000428313 DNAH6Q9C0G6 4158 aa8.47□□□□□ -1.05
C9orf3-206ENST00000428313 KRTAP10-6P60371 365 aaPredicted RBP8.45□□□□□ -1.06
C9orf3-206ENST00000428313 KMT2AQ03164 3969 aa8.44□□□□□ -1.06
C9orf3-206ENST00000428313 KRTAP13-4Q3LI77 160 aa8.42□□□□□ -1.06
C9orf3-206ENST00000428313 A0A0D9SG42 100 aa8.4□□□□□ -1.07
C9orf3-206ENST00000428313 STARD9Q9P2P6 4700 aa8.36□□□□□ -1.07
C9orf3-206ENST00000428313 KRTAP10-2P60368 255 aa8.33□□□□□ -1.08
C9orf3-206ENST00000428313 KRTAP3-2Q9BYR7 98 aa8.33□□□□□ -1.08
C9orf3-206ENST00000428313 S4R3F8 94 aa8.33□□□□□ -1.08
C9orf3-206ENST00000428313 DNAH5Q8TE73 4624 aa8.33□□□□□ -1.08
C9orf3-206ENST00000428313 C9orf92A6NGG3 77 aa8.31□□□□□ -1.08
C9orf3-206ENST00000428313 KRTAP3-3Q9BYR6 98 aa8.27□□□□□ -1.09
C9orf3-206ENST00000428313 KRTAP10-1P60331 282 aa8.27□□□□□ -1.09
C9orf3-206ENST00000428313 LRP1BQ9NZR2 4599 aa8.26□□□□□ -1.09
C9orf3-206ENST00000428313 XP32Q5T750 250 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms