RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 KRTAP4-16G5E9R7 235 aaPredicted RBP4.97□□□□□ -1.61
UBR4-206ENST00000419533 OTOGQ6ZRI0 2925 aa4.96□□□□□ -1.62
UBR4-206ENST00000419533 ZANQ9Y493 2812 aa4.96□□□□□ -1.62
UBR4-206ENST00000419533 CRYBG3Q68DQ2 2970 aa4.96□□□□□ -1.62
UBR4-206ENST00000419533 NIPBLQ6KC79 2804 aaeCLIP4.95□□□□□ -1.62
UBR4-206ENST00000419533 DMDP11532 3685 aa4.95□□□□□ -1.62
UBR4-206ENST00000419533 H3BS24 57 aa4.94□□□□□ -1.62
UBR4-206ENST00000419533 LUZP6Q538Z0 58 aa4.94□□□□□ -1.62
UBR4-206ENST00000419533 RPS29P62273 56 aaKnown RBP4.93□□□□□ -1.62
UBR4-206ENST00000419533 A0A087X002 238 aa4.93□□□□□ -1.62
UBR4-206ENST00000419533 MXRA5Q9NR99 2828 aa4.92□□□□□ -1.62
UBR4-206ENST00000419533 SPEGQ15772 3267 aa4.91□□□□□ -1.62
UBR4-206ENST00000419533 ASB16-AS1Q495Z4 193 aa4.89□□□□□ -1.63
UBR4-206ENST00000419533 M0QZ58 72 aa4.88□□□□□ -1.63
UBR4-206ENST00000419533 KRTAP29-1A8MX34 341 aaPredicted RBP4.87□□□□□ -1.63
UBR4-206ENST00000419533 PLAC4Q8WY50 150 aa4.86□□□□□ -1.63
UBR4-206ENST00000419533 NBPF19A0A087WUL8 3843 aa4.86□□□□□ -1.63
UBR4-206ENST00000419533 ANK3Q12955 4377 aaKnown RBP4.85□□□□□ -1.63
UBR4-206ENST00000419533 DCHS2Q6V1P9 2916 aa4.85□□□□□ -1.63
UBR4-206ENST00000419533 LAMA5O15230 3695 aa4.85□□□□□ -1.63
UBR4-206ENST00000419533 RELNP78509 3460 aa4.84□□□□□ -1.63
UBR4-206ENST00000419533 RPL37P61927 97 aaKnown RBP4.84□□□□□ -1.63
UBR4-206ENST00000419533 KRTAP11-1Q8IUC1 163 aa4.83□□□□□ -1.64
UBR4-206ENST00000419533 NBEAL2Q6ZNJ1 2754 aa4.83□□□□□ -1.64
UBR4-206ENST00000419533 H1FX-AS1Q4G0G2 97 aa4.83□□□□□ -1.64
UBR4-206ENST00000419533 ADM2Q7Z4H4 148 aa4.83□□□□□ -1.64
UBR4-206ENST00000419533 STAB2Q8WWQ8 2551 aa4.82□□□□□ -1.64
UBR4-206ENST00000419533 NF1P21359 2839 aa4.82□□□□□ -1.64
UBR4-206ENST00000419533 A6NN06 94 aa4.81□□□□□ -1.64
UBR4-206ENST00000419533 KRTAP13-2Q52LG2 175 aa4.79□□□□□ -1.64
UBR4-206ENST00000419533 KRTAP7-1Q8IUC3 87 aa4.79□□□□□ -1.64
UBR4-206ENST00000419533 KRTAP13-1Q8IUC0 172 aa4.79□□□□□ -1.64
UBR4-206ENST00000419533 A0A1B0GVY2 172 aa4.78□□□□□ -1.64
UBR4-206ENST00000419533 NOTCH2NLQ7Z3S9 236 aa4.78□□□□□ -1.64
UBR4-206ENST00000419533 ZFHX4Q86UP3 3567 aa4.77□□□□□ -1.65
UBR4-206ENST00000419533 ROMO1P60602 79 aa4.77□□□□□ -1.65
UBR4-206ENST00000419533 SPATA8Q6RVD6 105 aa4.76□□□□□ -1.65
UBR4-206ENST00000419533 ASPMQ8IZT6 3477 aa4.75□□□□□ -1.65
UBR4-206ENST00000419533 BSNQ9UPA5 3926 aa4.75□□□□□ -1.65
UBR4-206ENST00000419533 WDFY3Q8IZQ1 3526 aa4.74□□□□□ -1.65
UBR4-206ENST00000419533 SMG1Q96Q15 3661 aaKnown RBP4.74□□□□□ -1.65
UBR4-206ENST00000419533 FBN1P35555 2871 aaKnown RBP4.71□□□□□ -1.65
UBR4-206ENST00000419533 A8MU10 97 aa4.71□□□□□ -1.66
UBR4-206ENST00000419533 C20orf166-AS1Q96NR2 134 aa4.7□□□□□ -1.66
UBR4-206ENST00000419533 A8MUU9 505 aa4.7□□□□□ -1.66
UBR4-206ENST00000419533 FBN3Q75N90 2809 aa4.68□□□□□ -1.66
UBR4-206ENST00000419533 FLG2Q5D862 2391 aaPredicted RBP4.67□□□□□ -1.66
UBR4-206ENST00000419533 TENM2Q9NT68 2774 aa4.67□□□□□ -1.66
UBR4-206ENST00000419533 ZFHX3Q15911 3703 aa4.66□□□□□ -1.66
UBR4-206ENST00000419533 DMBT1Q9UGM3 2413 aaPredicted RBP4.66□□□□□ -1.66
UBR4-206ENST00000419533 TENM1Q9UKZ4 2725 aa4.66□□□□□ -1.66
UBR4-206ENST00000419533 A0A0A0MQY5 61 aa4.65□□□□□ -1.66
UBR4-206ENST00000419533 KRTAP25-1Q3LHN0 102 aa4.64□□□□□ -1.67
UBR4-206ENST00000419533 SPENQ96T58 3664 aaKnown RBP4.6□□□□□ -1.67
UBR4-206ENST00000419533 TENM3Q9P273 2699 aa4.59□□□□□ -1.67
UBR4-206ENST00000419533 VWFP04275 2813 aa4.59□□□□□ -1.67
UBR4-206ENST00000419533 KRTAP1-4P0C5Y4 121 aa4.59□□□□□ -1.68
UBR4-206ENST00000419533 CELSR1Q9NYQ6 3014 aa4.58□□□□□ -1.68
UBR4-206ENST00000419533 CSMD1Q96PZ7 3565 aa4.58□□□□□ -1.68
UBR4-206ENST00000419533 XP32Q5T750 250 aa4.57□□□□□ -1.68
UBR4-206ENST00000419533 AKAP9Q99996 3911 aa4.56□□□□□ -1.68
UBR4-206ENST00000419533 TPRXLQ17RH7 258 aa4.55□□□□□ -1.68
UBR4-206ENST00000419533 KRTAP16-1A8MUX0 517 aa4.54□□□□□ -1.68
UBR4-206ENST00000419533 PKD1L1Q8TDX9 2849 aa4.54□□□□□ -1.68
UBR4-206ENST00000419533 TNP1P09430 55 aa4.52□□□□□ -1.69
UBR4-206ENST00000419533 ALMS1Q8TCU4 4167 aa4.49□□□□□ -1.69
UBR4-206ENST00000419533 KRTAP10-8P60410 259 aa4.48□□□□□ -1.69
UBR4-206ENST00000419533 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
UBR4-206ENST00000419533 TGP01266 2768 aa4.47□□□□□ -1.69
UBR4-206ENST00000419533 CSMD2Q7Z408 3487 aa4.47□□□□□ -1.69
UBR4-206ENST00000419533 KRTAP13-3Q3SY46 172 aa4.43□□□□□ -1.7
UBR4-206ENST00000419533 HUWE1Q7Z6Z7 4374 aaKnown RBP4.42□□□□□ -1.7
UBR4-206ENST00000419533 TRRAPQ9Y4A5 3859 aa4.41□□□□□ -1.7
UBR4-206ENST00000419533 KRTAP10-10P60014 251 aa4.4□□□□□ -1.7
UBR4-206ENST00000419533 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
UBR4-206ENST00000419533 PRO2289Q9P1D8 64 aa4.37□□□□□ -1.71
UBR4-206ENST00000419533 DNAH9Q9NYC9 4486 aa4.37□□□□□ -1.71
UBR4-206ENST00000419533 H0YAA0 97 aa4.35□□□□□ -1.71
UBR4-206ENST00000419533 ZNF469Q96JG9 3925 aaPredicted RBP4.35□□□□□ -1.71
UBR4-206ENST00000419533 MEGF8Q7Z7M0 2845 aa4.32□□□□□ -1.72
UBR4-206ENST00000419533 C10orf95Q9H7T3 257 aa4.31□□□□□ -1.72
UBR4-206ENST00000419533 ANK2Q01484 3957 aa4.31□□□□□ -1.72
UBR4-206ENST00000419533 SVEP1Q4LDE5 3571 aa4.3□□□□□ -1.72
UBR4-206ENST00000419533 KRTAP4-5Q9BYR2 181 aa4.29□□□□□ -1.72
UBR4-206ENST00000419533 DNHD1Q96M86 4753 aa4.28□□□□□ -1.72
UBR4-206ENST00000419533 MT1HL1P0DM35 61 aa4.26□□□□□ -1.73
UBR4-206ENST00000419533 KRTAP10-4P60372 401 aaPredicted RBP4.24□□□□□ -1.73
UBR4-206ENST00000419533 P0C880 135 aa4.23□□□□□ -1.73
UBR4-206ENST00000419533 DNAH1Q9P2D7 4330 aa4.19□□□□□ -1.74
UBR4-206ENST00000419533 VPS13CQ709C8 3753 aa4.19□□□□□ -1.74
UBR4-206ENST00000419533 CUBNO60494 3623 aa4.16□□□□□ -1.74
UBR4-206ENST00000419533 COL7A1Q02388 2944 aa4.16□□□□□ -1.74
UBR4-206ENST00000419533 DNAH11Q96DT5 4516 aa4.16□□□□□ -1.74
UBR4-206ENST00000419533 PLECQ15149 4684 aaKnown RBP4.14□□□□□ -1.75
UBR4-206ENST00000419533 PRKDCP78527 4128 aaKnown RBP4.11□□□□□ -1.75
UBR4-206ENST00000419533 DYNC2H1Q8NCM8 4307 aaKnown RBP4.11□□□□□ -1.75
UBR4-206ENST00000419533 VPS13DQ5THJ4 4388 aa4.1□□□□□ -1.75
UBR4-206ENST00000419533 DNAH3Q8TD57 4116 aa4.09□□□□□ -1.75
UBR4-206ENST00000419533 DNAH10Q8IVF4 4471 aa4.09□□□□□ -1.75
UBR4-206ENST00000419533 CMYA5Q8N3K9 4069 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms