RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 Q96NJ1 140 aa8.88□□□□□ -0.99
NCKIPSD-204ENST00000416649 A0A087X002 238 aa8.88□□□□□ -0.99
NCKIPSD-204ENST00000416649 NOTCH2NLQ7Z3S9 236 aa8.88□□□□□ -0.99
NCKIPSD-204ENST00000416649 STARD9Q9P2P6 4700 aa8.88□□□□□ -0.99
NCKIPSD-204ENST00000416649 MRPL34Q9BQ48 92 aaKnown RBP8.87□□□□□ -0.99
NCKIPSD-204ENST00000416649 APLNQ9ULZ1 77 aa8.87□□□□□ -0.99
NCKIPSD-204ENST00000416649 A0A1B0GVX0 72 aa8.86□□□□□ -0.99
NCKIPSD-204ENST00000416649 ANAPC11Q9NYG5 84 aa8.86□□□□□ -0.99
NCKIPSD-204ENST00000416649 ASB16-AS1Q495Z4 193 aa8.84□□□□□ -0.99
NCKIPSD-204ENST00000416649 DNAH1Q9P2D7 4330 aa8.84□□□□□ -0.99
NCKIPSD-204ENST00000416649 SPINK6Q6UWN8 80 aa8.84□□□□□ -0.99
NCKIPSD-204ENST00000416649 A0A1B0GU69 56 aa8.82□□□□□ -1
NCKIPSD-204ENST00000416649 PANO1I0J062 215 aa8.81□□□□□ -1
NCKIPSD-204ENST00000416649 ACYP2P14621 99 aa8.81□□□□□ -1
NCKIPSD-204ENST00000416649 Q5W150 140 aa8.81□□□□□ -1
NCKIPSD-204ENST00000416649 KMT2AQ03164 3969 aa8.81□□□□□ -1
NCKIPSD-204ENST00000416649 PLA2G1BP04054 148 aaKnown RBP8.81□□□□□ -1
NCKIPSD-204ENST00000416649 FRAS1Q86XX4 4008 aa8.8□□□□□ -1
NCKIPSD-204ENST00000416649 RETNLBQ9BQ08 111 aa8.77□□□□□ -1
NCKIPSD-204ENST00000416649 NUPR2A6NF83 97 aa8.75□□□□□ -1.01
NCKIPSD-204ENST00000416649 NBDYA0A0U1RRE5 68 aa8.74□□□□□ -1.01
NCKIPSD-204ENST00000416649 MIR22HGQ0VDD5 57 aa8.73□□□□□ -1.01
NCKIPSD-204ENST00000416649 CSAG1Q6PB30 78 aa8.73□□□□□ -1.01
NCKIPSD-204ENST00000416649 RTL8CO15255 209 aa8.72□□□□□ -1.01
NCKIPSD-204ENST00000416649 LY6G6CO95867 125 aa8.69□□□□□ -1.02
NCKIPSD-204ENST00000416649 SPATA8Q6RVD6 105 aa8.69□□□□□ -1.02
NCKIPSD-204ENST00000416649 UQCR11O14957 56 aa8.68□□□□□ -1.02
NCKIPSD-204ENST00000416649 KRTAP13-1Q8IUC0 172 aa8.67□□□□□ -1.02
NCKIPSD-204ENST00000416649 DYNC2H1Q8NCM8 4307 aaKnown RBP8.66□□□□□ -1.02
NCKIPSD-204ENST00000416649 DMAC1Q96GE9 116 aa8.65□□□□□ -1.03
NCKIPSD-204ENST00000416649 VPS13DQ5THJ4 4388 aa8.64□□□□□ -1.03
NCKIPSD-204ENST00000416649 C14orf177Q52M58 125 aa8.64□□□□□ -1.03
NCKIPSD-204ENST00000416649 WWC2-AS2Q96NR7 200 aa8.63□□□□□ -1.03
NCKIPSD-204ENST00000416649 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.63□□□□□ -1.03
NCKIPSD-204ENST00000416649 KRTAP13-3Q3SY46 172 aa8.62□□□□□ -1.03
NCKIPSD-204ENST00000416649 DNAH2Q9P225 4427 aa8.62□□□□□ -1.03
NCKIPSD-204ENST00000416649 Q6ZRN7 208 aaPredicted RBP8.61□□□□□ -1.03
NCKIPSD-204ENST00000416649 CIRBP-AS1Q8TBR5 109 aa8.6□□□□□ -1.03
NCKIPSD-204ENST00000416649 ZNF706Q9Y5V0 76 aaPredicted RBP8.57□□□□□ -1.04
NCKIPSD-204ENST00000416649 LINC00483Q53H64 154 aa8.56□□□□□ -1.04
NCKIPSD-204ENST00000416649 A0A087WTM6 91 aa8.56□□□□□ -1.04
NCKIPSD-204ENST00000416649 SPINK1P00995 79 aa8.55□□□□□ -1.04
NCKIPSD-204ENST00000416649 ALMS1Q8TCU4 4167 aa8.54□□□□□ -1.04
NCKIPSD-204ENST00000416649 HYDINQ4G0P3 5121 aa8.53□□□□□ -1.04
NCKIPSD-204ENST00000416649 IGKV2D-30A0A075B6S6 120 aa8.53□□□□□ -1.04
NCKIPSD-204ENST00000416649 IGKV2-30P06310 120 aa8.53□□□□□ -1.04
NCKIPSD-204ENST00000416649 PSORS1C2Q9UIG4 136 aa8.53□□□□□ -1.04
NCKIPSD-204ENST00000416649 HECTD4Q9Y4D8 3996 aa8.51□□□□□ -1.05
NCKIPSD-204ENST00000416649 C1orf134Q5TEV5 83 aa8.51□□□□□ -1.05
NCKIPSD-204ENST00000416649 DNAH6Q9C0G6 4158 aa8.51□□□□□ -1.05
NCKIPSD-204ENST00000416649 FAM229AH3BQW9 127 aa8.5□□□□□ -1.05
NCKIPSD-204ENST00000416649 ZNF861PO60384 105 aa8.49□□□□□ -1.05
NCKIPSD-204ENST00000416649 DNAH8Q96JB1 4490 aa8.49□□□□□ -1.05
NCKIPSD-204ENST00000416649 FLG2Q5D862 2391 aaPredicted RBP8.48□□□□□ -1.05
NCKIPSD-204ENST00000416649 SPACA4Q8TDM5 124 aa8.48□□□□□ -1.05
NCKIPSD-204ENST00000416649 IGLV5-52A0A0A0MRZ9 124 aa8.47□□□□□ -1.05
NCKIPSD-204ENST00000416649 KRTAP10-2P60368 255 aa8.43□□□□□ -1.06
NCKIPSD-204ENST00000416649 DNAH17Q9UFH2 4485 aa8.42□□□□□ -1.06
NCKIPSD-204ENST00000416649 DNAH11Q96DT5 4516 aa8.42□□□□□ -1.06
NCKIPSD-204ENST00000416649 IGLV7-43P04211 117 aa8.41□□□□□ -1.06
NCKIPSD-204ENST00000416649 Q8N1X5 172 aa8.37□□□□□ -1.07
NCKIPSD-204ENST00000416649 CRIPTQ9P021 101 aa8.35□□□□□ -1.07
NCKIPSD-204ENST00000416649 DNAH5Q8TE73 4624 aa8.32□□□□□ -1.08
NCKIPSD-204ENST00000416649 KRTAP25-1Q3LHN0 102 aa8.32□□□□□ -1.08
NCKIPSD-204ENST00000416649 PKHD1P08F94 4074 aa8.31□□□□□ -1.08
NCKIPSD-204ENST00000416649 ROMO1P60602 79 aa8.31□□□□□ -1.08
NCKIPSD-204ENST00000416649 KRTAP21-3Q3LHN1 58 aa8.3□□□□□ -1.08
NCKIPSD-204ENST00000416649 H0YAA0 97 aa8.28□□□□□ -1.08
NCKIPSD-204ENST00000416649 LINC00304Q8N9R0 145 aa8.28□□□□□ -1.08
NCKIPSD-204ENST00000416649 KRTAP10-1P60331 282 aa8.27□□□□□ -1.09
NCKIPSD-204ENST00000416649 A8MUU9 505 aa8.27□□□□□ -1.09
NCKIPSD-204ENST00000416649 Q6ZSA8 131 aa8.27□□□□□ -1.09
NCKIPSD-204ENST00000416649 SSBP3-AS1Q7Z2R9 100 aa8.27□□□□□ -1.09
NCKIPSD-204ENST00000416649 FAT2Q9NYQ8 4349 aa8.27□□□□□ -1.09
NCKIPSD-204ENST00000416649 LRP1BQ9NZR2 4599 aa8.26□□□□□ -1.09
NCKIPSD-204ENST00000416649 SACSQ9NZJ4 4579 aa8.24□□□□□ -1.09
NCKIPSD-204ENST00000416649 KRTAP16-1A8MUX0 517 aa8.24□□□□□ -1.09
NCKIPSD-204ENST00000416649 DMBT1Q9UGM3 2413 aaPredicted RBP8.23□□□□□ -1.09
NCKIPSD-204ENST00000416649 PKD1P98161 4303 aa8.22□□□□□ -1.09
NCKIPSD-204ENST00000416649 TYMSOSQ8TAI1 123 aa8.22□□□□□ -1.09
NCKIPSD-204ENST00000416649 KMT2CQ8NEZ4 4911 aaKnown RBP8.21□□□□□ -1.09
NCKIPSD-204ENST00000416649 A0A1B0GU33 70 aa8.18□□□□□ -1.1
NCKIPSD-204ENST00000416649 SMR3BP02814 79 aaPredicted RBP8.16□□□□□ -1.1
NCKIPSD-204ENST00000416649 KRTAP13-2Q52LG2 175 aa8.16□□□□□ -1.1
NCKIPSD-204ENST00000416649 VPS13BQ7Z7G8 4022 aa8.15□□□□□ -1.1
NCKIPSD-204ENST00000416649 P0C880 135 aa8.1□□□□□ -1.11
NCKIPSD-204ENST00000416649 FAT1Q14517 4588 aa8.09□□□□□ -1.11
NCKIPSD-204ENST00000416649 K7ERS5 55 aa8.08□□□□□ -1.12
NCKIPSD-204ENST00000416649 H1FX-AS1Q4G0G2 97 aa8.08□□□□□ -1.12
NCKIPSD-204ENST00000416649 DYNC1H1Q14204 4646 aaKnown RBP8.04□□□□□ -1.12
NCKIPSD-204ENST00000416649 SPINT4Q6UDR6 99 aa8.02□□□□□ -1.13
NCKIPSD-204ENST00000416649 RYR2Q92736 4967 aa8.01□□□□□ -1.13
NCKIPSD-204ENST00000416649 C9orf92A6NGG3 77 aa7.99□□□□□ -1.13
NCKIPSD-204ENST00000416649 COX6B2Q6YFQ2 88 aa7.94□□□□□ -1.14
NCKIPSD-204ENST00000416649 RYR3Q15413 4870 aa7.93□□□□□ -1.14
NCKIPSD-204ENST00000416649 KRTAP3-1Q9BYR8 98 aa7.93□□□□□ -1.14
NCKIPSD-204ENST00000416649 KRTAP1-4P0C5Y4 121 aa7.91□□□□□ -1.14
NCKIPSD-204ENST00000416649 A0A0D9SG42 100 aa7.91□□□□□ -1.14
NCKIPSD-204ENST00000416649 A0A1B0GVY2 172 aa7.89□□□□□ -1.15
NCKIPSD-204ENST00000416649 APOBP04114 4563 aaKnown RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms