RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 SPRR1AP35321 89 aa3.1□□□□□ -1.91
SMAD4-202ENST00000398417 CSAG1Q6PB30 78 aa3.1□□□□□ -1.91
SMAD4-202ENST00000398417 MXRA5Q9NR99 2828 aa3.1□□□□□ -1.91
SMAD4-202ENST00000398417 ANAPC11Q9NYG5 84 aa3.09□□□□□ -1.91
SMAD4-202ENST00000398417 A0A0D9SG42 100 aa3.09□□□□□ -1.91
SMAD4-202ENST00000398417 COL6A5A8TX70 2615 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 HIVEP1P15822 2718 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 COL7A1Q02388 2944 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 FAM229BQ4G0N7 80 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 KRTAP11-1Q8IUC1 163 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 DNAH7Q8WXX0 4024 aa3.08□□□□□ -1.92
SMAD4-202ENST00000398417 KRTAP4-16G5E9R7 235 aaPredicted RBP3.07□□□□□ -1.92
SMAD4-202ENST00000398417 NBEAL2Q6ZNJ1 2754 aa3.07□□□□□ -1.92
SMAD4-202ENST00000398417 PANO1I0J062 215 aa3.07□□□□□ -1.92
SMAD4-202ENST00000398417 C9orf163Q8N9P6 203 aa3.07□□□□□ -1.92
SMAD4-202ENST00000398417 UNC79Q9P2D8 2635 aa3.06□□□□□ -1.92
SMAD4-202ENST00000398417 CNBPP62633 177 aaKnown RBP3.06□□□□□ -1.92
SMAD4-202ENST00000398417 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.06□□□□□ -1.92
SMAD4-202ENST00000398417 SRRM2Q9UQ35 2752 aaKnown RBP3.06□□□□□ -1.92
SMAD4-202ENST00000398417 TP53AIP1Q9HCN2 124 aa3.05□□□□□ -1.92
SMAD4-202ENST00000398417 SPRR4Q96PI1 79 aa3.05□□□□□ -1.92
SMAD4-202ENST00000398417 P0C880 135 aa3.05□□□□□ -1.92
SMAD4-202ENST00000398417 SMR3BP02814 79 aaPredicted RBP3.05□□□□□ -1.92
SMAD4-202ENST00000398417 PRKDCP78527 4128 aaKnown RBP3.05□□□□□ -1.92
SMAD4-202ENST00000398417 KMT2AQ03164 3969 aa3.05□□□□□ -1.92
SMAD4-202ENST00000398417 M0R2T5 61 aa3.04□□□□□ -1.92
SMAD4-202ENST00000398417 A0A087WTM6 91 aa3.04□□□□□ -1.92
SMAD4-202ENST00000398417 ADM2Q7Z4H4 148 aa3.03□□□□□ -1.92
SMAD4-202ENST00000398417 ANK3Q12955 4377 aaKnown RBP3.02□□□□□ -1.93
SMAD4-202ENST00000398417 MMP24-AS1A0A0U1RRL7 71 aa3.02□□□□□ -1.93
SMAD4-202ENST00000398417 KRTAP25-1Q3LHN0 102 aa3.02□□□□□ -1.93
SMAD4-202ENST00000398417 PP632Q6XCG6 107 aa3.01□□□□□ -1.93
SMAD4-202ENST00000398417 SPRR1BP22528 89 aa3.01□□□□□ -1.93
SMAD4-202ENST00000398417 MRPL34Q9BQ48 92 aaKnown RBP3.01□□□□□ -1.93
SMAD4-202ENST00000398417 KRTAP23-1A1A580 65 aa3□□□□□ -1.93
SMAD4-202ENST00000398417 LINC00304Q8N9R0 145 aa3□□□□□ -1.93
SMAD4-202ENST00000398417 PKD1L1Q8TDX9 2849 aa3□□□□□ -1.93
SMAD4-202ENST00000398417 TGP01266 2768 aa2.99□□□□□ -1.93
SMAD4-202ENST00000398417 KRTAP29-1A8MX34 341 aaPredicted RBP2.99□□□□□ -1.93
SMAD4-202ENST00000398417 Q75L30 129 aa2.99□□□□□ -1.93
SMAD4-202ENST00000398417 LINC00472Q9H8W2 130 aa2.99□□□□□ -1.93
SMAD4-202ENST00000398417 A0A1B0GVX0 72 aa2.98□□□□□ -1.93
SMAD4-202ENST00000398417 ZCCHC13Q8WW36 166 aaKnown RBP2.98□□□□□ -1.93
SMAD4-202ENST00000398417 ZNF861PO60384 105 aa2.98□□□□□ -1.93
SMAD4-202ENST00000398417 Q8N1X5 172 aa2.98□□□□□ -1.93
SMAD4-202ENST00000398417 C20orf166-AS1Q96NR2 134 aa2.97□□□□□ -1.93
SMAD4-202ENST00000398417 A0A087X002 238 aa2.96□□□□□ -1.94
SMAD4-202ENST00000398417 NOTCH2NLQ7Z3S9 236 aa2.96□□□□□ -1.94
SMAD4-202ENST00000398417 Q6ZRN7 208 aaPredicted RBP2.96□□□□□ -1.94
SMAD4-202ENST00000398417 WWC2-AS2Q96NR7 200 aa2.95□□□□□ -1.94
SMAD4-202ENST00000398417 LCE6AA0A183 80 aa2.95□□□□□ -1.94
SMAD4-202ENST00000398417 PLAC8Q9NZF1 115 aa2.95□□□□□ -1.94
SMAD4-202ENST00000398417 Q8N9P0 234 aaPredicted RBP2.94□□□□□ -1.94
SMAD4-202ENST00000398417 Q5VV11 94 aa2.94□□□□□ -1.94
SMAD4-202ENST00000398417 SPATA8Q6RVD6 105 aa2.94□□□□□ -1.94
SMAD4-202ENST00000398417 KRTAP13-1Q8IUC0 172 aa2.94□□□□□ -1.94
SMAD4-202ENST00000398417 KRTAP10-2P60368 255 aa2.93□□□□□ -1.94
SMAD4-202ENST00000398417 SPANXA2-OT1Q8N9U9 137 aa2.93□□□□□ -1.94
SMAD4-202ENST00000398417 HRES1P13985 223 aa2.92□□□□□ -1.94
SMAD4-202ENST00000398417 Q5W150 140 aa2.91□□□□□ -1.94
SMAD4-202ENST00000398417 Q6ZSA8 131 aa2.91□□□□□ -1.94
SMAD4-202ENST00000398417 A8MU10 97 aa2.91□□□□□ -1.94
SMAD4-202ENST00000398417 KRTAP10-1P60331 282 aa2.9□□□□□ -1.94
SMAD4-202ENST00000398417 LINC01558Q9Y6Z2 57 aa2.89□□□□□ -1.95
SMAD4-202ENST00000398417 S4R3F8 94 aa2.88□□□□□ -1.95
SMAD4-202ENST00000398417 TENM1Q9UKZ4 2725 aa2.88□□□□□ -1.95
SMAD4-202ENST00000398417 ASB16-AS1Q495Z4 193 aa2.88□□□□□ -1.95
SMAD4-202ENST00000398417 VWFP04275 2813 aa2.87□□□□□ -1.95
SMAD4-202ENST00000398417 A6NN06 94 aa2.87□□□□□ -1.95
SMAD4-202ENST00000398417 KRTAP13-2Q52LG2 175 aa2.86□□□□□ -1.95
SMAD4-202ENST00000398417 Q5VSD8 79 aa2.86□□□□□ -1.95
SMAD4-202ENST00000398417 DNAH3Q8TD57 4116 aa2.85□□□□□ -1.95
SMAD4-202ENST00000398417 HECTD4Q9Y4D8 3996 aa2.85□□□□□ -1.95
SMAD4-202ENST00000398417 A0A1B0GU33 70 aa2.83□□□□□ -1.96
SMAD4-202ENST00000398417 TENM3Q9P273 2699 aa2.83□□□□□ -1.96
SMAD4-202ENST00000398417 PKHD1P08F94 4074 aa2.83□□□□□ -1.96
SMAD4-202ENST00000398417 R4GN34 69 aa2.81□□□□□ -1.96
SMAD4-202ENST00000398417 TENM2Q9NT68 2774 aa2.8□□□□□ -1.96
SMAD4-202ENST00000398417 KRTAP1-4P0C5Y4 121 aa2.77□□□□□ -1.97
SMAD4-202ENST00000398417 DNAH6Q9C0G6 4158 aa2.76□□□□□ -1.97
SMAD4-202ENST00000398417 C10orf95Q9H7T3 257 aa2.76□□□□□ -1.97
SMAD4-202ENST00000398417 M0QZ58 72 aa2.75□□□□□ -1.97
SMAD4-202ENST00000398417 KRTAP13-3Q3SY46 172 aa2.74□□□□□ -1.97
SMAD4-202ENST00000398417 RPL37P61927 97 aaKnown RBP2.73□□□□□ -1.97
SMAD4-202ENST00000398417 DNAH10Q8IVF4 4471 aa2.72□□□□□ -1.97
SMAD4-202ENST00000398417 HUWE1Q7Z6Z7 4374 aaKnown RBP2.72□□□□□ -1.97
SMAD4-202ENST00000398417 PLECQ15149 4684 aaKnown RBP2.72□□□□□ -1.97
SMAD4-202ENST00000398417 DYNC2H1Q8NCM8 4307 aaKnown RBP2.71□□□□□ -1.98
SMAD4-202ENST00000398417 A8MUU9 505 aa2.7□□□□□ -1.98
SMAD4-202ENST00000398417 DYNC1H1Q14204 4646 aaKnown RBP2.68□□□□□ -1.98
SMAD4-202ENST00000398417 DNAH17Q9UFH2 4485 aa2.67□□□□□ -1.98
SMAD4-202ENST00000398417 VPS13BQ7Z7G8 4022 aa2.67□□□□□ -1.98
SMAD4-202ENST00000398417 DNHD1Q96M86 4753 aa2.66□□□□□ -1.98
SMAD4-202ENST00000398417 DNAH1Q9P2D7 4330 aa2.66□□□□□ -1.98
SMAD4-202ENST00000398417 DNAH9Q9NYC9 4486 aa2.65□□□□□ -1.99
SMAD4-202ENST00000398417 DNAH8Q96JB1 4490 aa2.65□□□□□ -1.99
SMAD4-202ENST00000398417 FBN3Q75N90 2809 aa2.64□□□□□ -1.99
SMAD4-202ENST00000398417 SACSQ9NZJ4 4579 aa2.64□□□□□ -1.99
SMAD4-202ENST00000398417 RPS29P62273 56 aaKnown RBP2.64□□□□□ -1.99
SMAD4-202ENST00000398417 DNAH11Q96DT5 4516 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms