RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 IGKV2-30P06310 120 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 A0A0A0MQY5 61 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 H3BPC8 53 aa6.2□□□□□ -1.42
COL6A3-205ENST00000392004 SPANXA2-OT1Q8N9U9 137 aa6.17□□□□□ -1.42
COL6A3-205ENST00000392004 ATP11AUNQ6ZP68 121 aa6.16□□□□□ -1.42
COL6A3-205ENST00000392004 Q5VV11 94 aa6.15□□□□□ -1.42
COL6A3-205ENST00000392004 LINC00313P59037 77 aa6.15□□□□□ -1.43
COL6A3-205ENST00000392004 IGLV7-46A0A075B6I9 117 aa6.15□□□□□ -1.43
COL6A3-205ENST00000392004 PCOTHQ58A44 107 aa6.14□□□□□ -1.43
COL6A3-205ENST00000392004 LCA10Q71F78 164 aa6.14□□□□□ -1.43
COL6A3-205ENST00000392004 Q8N9P0 234 aaPredicted RBP6.14□□□□□ -1.43
COL6A3-205ENST00000392004 DNAH9Q9NYC9 4486 aa6.13□□□□□ -1.43
COL6A3-205ENST00000392004 SPAG11AQ6PDA7 123 aa6.12□□□□□ -1.43
COL6A3-205ENST00000392004 A8MWP4 228 aa6.12□□□□□ -1.43
COL6A3-205ENST00000392004 SPINK1P00995 79 aa6.11□□□□□ -1.43
COL6A3-205ENST00000392004 C7orf65Q6ZTY9 151 aa6.11□□□□□ -1.43
COL6A3-205ENST00000392004 Q8N1X5 172 aa6.11□□□□□ -1.43
COL6A3-205ENST00000392004 COA5Q86WW8 74 aa6.11□□□□□ -1.43
COL6A3-205ENST00000392004 KRTAP29-1A8MX34 341 aaPredicted RBP6.1□□□□□ -1.43
COL6A3-205ENST00000392004 IGLV8-61A0A075B6I0 122 aa6.09□□□□□ -1.43
COL6A3-205ENST00000392004 LOC101927531A0A1B0GV80 90 aa6.08□□□□□ -1.44
COL6A3-205ENST00000392004 A8MU10 97 aa6.08□□□□□ -1.44
COL6A3-205ENST00000392004 COX6B2Q6YFQ2 88 aa6.08□□□□□ -1.44
COL6A3-205ENST00000392004 Q75L30 129 aa6.07□□□□□ -1.44
COL6A3-205ENST00000392004 ANK2Q01484 3957 aa6.06□□□□□ -1.44
COL6A3-205ENST00000392004 Q6ZSA8 131 aa6.04□□□□□ -1.44
COL6A3-205ENST00000392004 TP53AIP1Q9HCN2 124 aa6.04□□□□□ -1.44
COL6A3-205ENST00000392004 LINC00472Q9H8W2 130 aa6.04□□□□□ -1.44
COL6A3-205ENST00000392004 CDC42SE1Q9NRR8 79 aa6.04□□□□□ -1.44
COL6A3-205ENST00000392004 PLECQ15149 4684 aaKnown RBP6.03□□□□□ -1.44
COL6A3-205ENST00000392004 A0A1B0GVY2 172 aa6.03□□□□□ -1.44
COL6A3-205ENST00000392004 MMP24-AS1A0A0U1RRL7 71 aa6.02□□□□□ -1.45
COL6A3-205ENST00000392004 KRTAP13-2Q52LG2 175 aa6.01□□□□□ -1.45
COL6A3-205ENST00000392004 A0A1B0GVX0 72 aa6□□□□□ -1.45
COL6A3-205ENST00000392004 C8orf17Q9NRJ1 99 aa6□□□□□ -1.45
COL6A3-205ENST00000392004 SPRR1BP22528 89 aa5.99□□□□□ -1.45
COL6A3-205ENST00000392004 LINC01554Q52M75 96 aa5.99□□□□□ -1.45
COL6A3-205ENST00000392004 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
COL6A3-205ENST00000392004 STARD9Q9P2P6 4700 aa5.98□□□□□ -1.45
COL6A3-205ENST00000392004 MRPL34Q9BQ48 92 aaKnown RBP5.97□□□□□ -1.45
COL6A3-205ENST00000392004 A6NN06 94 aa5.95□□□□□ -1.46
COL6A3-205ENST00000392004 KRTAP13-1Q8IUC0 172 aa5.93□□□□□ -1.46
COL6A3-205ENST00000392004 HRES1P13985 223 aa5.92□□□□□ -1.46
COL6A3-205ENST00000392004 SPINK7P58062 85 aa5.91□□□□□ -1.46
COL6A3-205ENST00000392004 LINC00483Q53H64 154 aa5.9□□□□□ -1.46
COL6A3-205ENST00000392004 PRAC1Q96KF2 57 aa5.9□□□□□ -1.46
COL6A3-205ENST00000392004 KRTAP4-5Q9BYR2 181 aa5.9□□□□□ -1.46
COL6A3-205ENST00000392004 A0A1B0GU69 56 aa5.9□□□□□ -1.47
COL6A3-205ENST00000392004 M0R2T5 61 aa5.89□□□□□ -1.47
COL6A3-205ENST00000392004 KRTAP1-4P0C5Y4 121 aa5.89□□□□□ -1.47
COL6A3-205ENST00000392004 KIAA1109Q2LD37 5005 aa5.88□□□□□ -1.47
COL6A3-205ENST00000392004 NOTCH2NLQ7Z3S9 236 aa5.88□□□□□ -1.47
COL6A3-205ENST00000392004 ACYP2P14621 99 aa5.88□□□□□ -1.47
COL6A3-205ENST00000392004 CMYA5Q8N3K9 4069 aa5.86□□□□□ -1.47
COL6A3-205ENST00000392004 KMT2AQ03164 3969 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 LYSTQ99698 3801 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 DNAH10Q8IVF4 4471 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 DNAH11Q96DT5 4516 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 ASB16-AS1Q495Z4 193 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 HYDINQ4G0P3 5121 aa5.85□□□□□ -1.47
COL6A3-205ENST00000392004 DNAH5Q8TE73 4624 aa5.84□□□□□ -1.47
COL6A3-205ENST00000392004 FAT1Q14517 4588 aa5.83□□□□□ -1.48
COL6A3-205ENST00000392004 KMT2CQ8NEZ4 4911 aaKnown RBP5.83□□□□□ -1.48
COL6A3-205ENST00000392004 DNAH1Q9P2D7 4330 aa5.81□□□□□ -1.48
COL6A3-205ENST00000392004 UQCR11O14957 56 aa5.8□□□□□ -1.48
COL6A3-205ENST00000392004 MIR22HGQ0VDD5 57 aa5.79□□□□□ -1.48
COL6A3-205ENST00000392004 RYR3Q15413 4870 aa5.77□□□□□ -1.49
COL6A3-205ENST00000392004 SEC61BP60468 96 aaKnown RBP5.77□□□□□ -1.49
COL6A3-205ENST00000392004 Q5W150 140 aa5.76□□□□□ -1.49
COL6A3-205ENST00000392004 RYR1P21817 5038 aa5.76□□□□□ -1.49
COL6A3-205ENST00000392004 K7ERS5 55 aa5.75□□□□□ -1.49
COL6A3-205ENST00000392004 DMAC1Q96GE9 116 aa5.72□□□□□ -1.49
COL6A3-205ENST00000392004 CSAG1Q6PB30 78 aa5.71□□□□□ -1.5
COL6A3-205ENST00000392004 DYNC1H1Q14204 4646 aaKnown RBP5.7□□□□□ -1.5
COL6A3-205ENST00000392004 ADM2Q7Z4H4 148 aa5.69□□□□□ -1.5
COL6A3-205ENST00000392004 SPATA8Q6RVD6 105 aa5.69□□□□□ -1.5
COL6A3-205ENST00000392004 LRP1BQ9NZR2 4599 aa5.67□□□□□ -1.5
COL6A3-205ENST00000392004 KRTAP10-8P60410 259 aa5.67□□□□□ -1.5
COL6A3-205ENST00000392004 VPS13DQ5THJ4 4388 aa5.67□□□□□ -1.5
COL6A3-205ENST00000392004 KRTAP13-3Q3SY46 172 aa5.66□□□□□ -1.5
COL6A3-205ENST00000392004 DNAH7Q8WXX0 4024 aa5.65□□□□□ -1.51
COL6A3-205ENST00000392004 SACSQ9NZJ4 4579 aa5.64□□□□□ -1.51
COL6A3-205ENST00000392004 DNAH3Q8TD57 4116 aa5.63□□□□□ -1.51
COL6A3-205ENST00000392004 KRTAP16-1A8MUX0 517 aa5.61□□□□□ -1.51
COL6A3-205ENST00000392004 XP32Q5T750 250 aa5.6□□□□□ -1.51
COL6A3-205ENST00000392004 RYR2Q92736 4967 aa5.6□□□□□ -1.51
COL6A3-205ENST00000392004 SPINT4Q6UDR6 99 aa5.57□□□□□ -1.52
COL6A3-205ENST00000392004 RPS29P62273 56 aaKnown RBP5.57□□□□□ -1.52
COL6A3-205ENST00000392004 MT1HL1P0DM35 61 aa5.56□□□□□ -1.52
COL6A3-205ENST00000392004 PKHD1P08F94 4074 aa5.56□□□□□ -1.52
COL6A3-205ENST00000392004 RPL37P61927 97 aaKnown RBP5.55□□□□□ -1.52
COL6A3-205ENST00000392004 ALMS1Q8TCU4 4167 aa5.55□□□□□ -1.52
COL6A3-205ENST00000392004 KRTAP10-4P60372 401 aaPredicted RBP5.55□□□□□ -1.52
COL6A3-205ENST00000392004 FAT3Q8TDW7 4589 aa5.54□□□□□ -1.52
COL6A3-205ENST00000392004 EPPK1P58107 5090 aaKnown RBP5.53□□□□□ -1.52
COL6A3-205ENST00000392004 VPS13BQ7Z7G8 4022 aa5.53□□□□□ -1.52
COL6A3-205ENST00000392004 MYCBP2O75592 4640 aa5.53□□□□□ -1.52
COL6A3-205ENST00000392004 DNAH6Q9C0G6 4158 aa5.51□□□□□ -1.53
COL6A3-205ENST00000392004 APOBP04114 4563 aaKnown RBP5.51□□□□□ -1.53
COL6A3-205ENST00000392004 HERC2O95714 4834 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms