RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DNAH2Q9P225 4427 aa10.67□□□□□ -0.7
SQSTM1-202ENST00000389805 SPACA4Q8TDM5 124 aa10.66□□□□□ -0.7
SQSTM1-202ENST00000389805 PLAC8Q9NZF1 115 aa10.65□□□□□ -0.7
SQSTM1-202ENST00000389805 SPRR1BP22528 89 aa10.65□□□□□ -0.7
SQSTM1-202ENST00000389805 KRTAP13-1Q8IUC0 172 aa10.65□□□□□ -0.71
SQSTM1-202ENST00000389805 PRR26Q8N8Z3 221 aa10.64□□□□□ -0.71
SQSTM1-202ENST00000389805 C8orf17Q9NRJ1 99 aa10.64□□□□□ -0.71
SQSTM1-202ENST00000389805 Q96NJ1 140 aa10.63□□□□□ -0.71
SQSTM1-202ENST00000389805 TP53AIP1Q9HCN2 124 aa10.62□□□□□ -0.71
SQSTM1-202ENST00000389805 RTL8CO15255 209 aa10.6□□□□□ -0.71
SQSTM1-202ENST00000389805 FBN3Q75N90 2809 aa10.6□□□□□ -0.71
SQSTM1-202ENST00000389805 Q6ZR54 194 aa10.59□□□□□ -0.71
SQSTM1-202ENST00000389805 A0A087X002 238 aa10.59□□□□□ -0.71
SQSTM1-202ENST00000389805 NOTCH2NLQ7Z3S9 236 aa10.59□□□□□ -0.71
SQSTM1-202ENST00000389805 PRAC1Q96KF2 57 aa10.59□□□□□ -0.71
SQSTM1-202ENST00000389805 ANAPC11Q9NYG5 84 aa10.58□□□□□ -0.72
SQSTM1-202ENST00000389805 C4orf48Q5BLP8 95 aa10.57□□□□□ -0.72
SQSTM1-202ENST00000389805 ASB16-AS1Q495Z4 193 aa10.56□□□□□ -0.72
SQSTM1-202ENST00000389805 PSORS1C2Q9UIG4 136 aa10.56□□□□□ -0.72
SQSTM1-202ENST00000389805 LINC00313P59037 77 aa10.53□□□□□ -0.72
SQSTM1-202ENST00000389805 ADM2Q7Z4H4 148 aa10.53□□□□□ -0.72
SQSTM1-202ENST00000389805 DNAH8Q96JB1 4490 aa10.53□□□□□ -0.72
SQSTM1-202ENST00000389805 A0A1B0GVX0 72 aa10.53□□□□□ -0.72
SQSTM1-202ENST00000389805 CDK2AP2O75956 126 aa10.53□□□□□ -0.72
SQSTM1-202ENST00000389805 MRPL34Q9BQ48 92 aaKnown RBP10.52□□□□□ -0.73
SQSTM1-202ENST00000389805 DNAH17Q9UFH2 4485 aa10.52□□□□□ -0.73
SQSTM1-202ENST00000389805 DNAH6Q9C0G6 4158 aa10.51□□□□□ -0.73
SQSTM1-202ENST00000389805 LY6G6CO95867 125 aa10.5□□□□□ -0.73
SQSTM1-202ENST00000389805 IGLV5-52A0A0A0MRZ9 124 aa10.5□□□□□ -0.73
SQSTM1-202ENST00000389805 C1orf134Q5TEV5 83 aa10.48□□□□□ -0.73
SQSTM1-202ENST00000389805 Q5W150 140 aa10.48□□□□□ -0.73
SQSTM1-202ENST00000389805 SPINK6Q6UWN8 80 aa10.48□□□□□ -0.73
SQSTM1-202ENST00000389805 C8orf87E5RJ46 101 aa10.45□□□□□ -0.74
SQSTM1-202ENST00000389805 WWC2-AS2Q96NR7 200 aa10.44□□□□□ -0.74
SQSTM1-202ENST00000389805 LINC00483Q53H64 154 aa10.44□□□□□ -0.74
SQSTM1-202ENST00000389805 ZNF861PO60384 105 aa10.43□□□□□ -0.74
SQSTM1-202ENST00000389805 KRTAP10-2P60368 255 aa10.38□□□□□ -0.75
SQSTM1-202ENST00000389805 RETNLBQ9BQ08 111 aa10.38□□□□□ -0.75
SQSTM1-202ENST00000389805 DNAH11Q96DT5 4516 aa10.37□□□□□ -0.75
SQSTM1-202ENST00000389805 ACYP2P14621 99 aa10.37□□□□□ -0.75
SQSTM1-202ENST00000389805 ZNF706Q9Y5V0 76 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-202ENST00000389805 DNAH5Q8TE73 4624 aa10.35□□□□□ -0.75
SQSTM1-202ENST00000389805 HYDINQ4G0P3 5121 aa10.35□□□□□ -0.75
SQSTM1-202ENST00000389805 ALMS1Q8TCU4 4167 aa10.35□□□□□ -0.75
SQSTM1-202ENST00000389805 IGLV7-43P04211 117 aa10.33□□□□□ -0.76
SQSTM1-202ENST00000389805 A0A1B0GU69 56 aa10.32□□□□□ -0.76
SQSTM1-202ENST00000389805 CIRBP-AS1Q8TBR5 109 aa10.32□□□□□ -0.76
SQSTM1-202ENST00000389805 H3BS24 57 aa10.3□□□□□ -0.76
SQSTM1-202ENST00000389805 KRTAP13-3Q3SY46 172 aa10.29□□□□□ -0.76
SQSTM1-202ENST00000389805 PLA2G1BP04054 148 aaKnown RBP10.27□□□□□ -0.77
SQSTM1-202ENST00000389805 LINC01554Q52M75 96 aa10.26□□□□□ -0.77
SQSTM1-202ENST00000389805 LRP1BQ9NZR2 4599 aa10.25□□□□□ -0.77
SQSTM1-202ENST00000389805 DMAC1Q96GE9 116 aa10.23□□□□□ -0.77
SQSTM1-202ENST00000389805 KRTAP10-1P60331 282 aa10.23□□□□□ -0.77
SQSTM1-202ENST00000389805 PKD1P98161 4303 aa10.22□□□□□ -0.77
SQSTM1-202ENST00000389805 MIR22HGQ0VDD5 57 aa10.21□□□□□ -0.77
SQSTM1-202ENST00000389805 FAT2Q9NYQ8 4349 aa10.21□□□□□ -0.78
SQSTM1-202ENST00000389805 SPATA8Q6RVD6 105 aa10.2□□□□□ -0.78
SQSTM1-202ENST00000389805 UQCR11O14957 56 aa10.16□□□□□ -0.78
SQSTM1-202ENST00000389805 CSAG1Q6PB30 78 aa10.14□□□□□ -0.79
SQSTM1-202ENST00000389805 VPS13BQ7Z7G8 4022 aa10.14□□□□□ -0.79
SQSTM1-202ENST00000389805 KRTAP13-2Q52LG2 175 aa10.12□□□□□ -0.79
SQSTM1-202ENST00000389805 Q6ZSA8 131 aa10.12□□□□□ -0.79
SQSTM1-202ENST00000389805 SSBP3-AS1Q7Z2R9 100 aa10.1□□□□□ -0.79
SQSTM1-202ENST00000389805 PKHD1P08F94 4074 aa10.08□□□□□ -0.8
SQSTM1-202ENST00000389805 IGKV2D-30A0A075B6S6 120 aa10.08□□□□□ -0.8
SQSTM1-202ENST00000389805 IGKV2-30P06310 120 aa10.08□□□□□ -0.8
SQSTM1-202ENST00000389805 FAM229AH3BQW9 127 aa10.08□□□□□ -0.8
SQSTM1-202ENST00000389805 SPINK1P00995 79 aa10.05□□□□□ -0.8
SQSTM1-202ENST00000389805 KRTAP1-4P0C5Y4 121 aa10.01□□□□□ -0.81
SQSTM1-202ENST00000389805 SACSQ9NZJ4 4579 aa9.95□□□□□ -0.82
SQSTM1-202ENST00000389805 Q8N1X5 172 aa9.91□□□□□ -0.82
SQSTM1-202ENST00000389805 SMR3BP02814 79 aaPredicted RBP9.89□□□□□ -0.83
SQSTM1-202ENST00000389805 FLG2Q5D862 2391 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-202ENST00000389805 KRTAP16-1A8MUX0 517 aa9.88□□□□□ -0.83
SQSTM1-202ENST00000389805 TYMSOSQ8TAI1 123 aa9.87□□□□□ -0.83
SQSTM1-202ENST00000389805 FAT1Q14517 4588 aa9.82□□□□□ -0.84
SQSTM1-202ENST00000389805 DYNC1H1Q14204 4646 aaKnown RBP9.82□□□□□ -0.84
SQSTM1-202ENST00000389805 KRTAP21-3Q3LHN1 58 aa9.82□□□□□ -0.84
SQSTM1-202ENST00000389805 H0YAA0 97 aa9.77□□□□□ -0.85
SQSTM1-202ENST00000389805 CRIPTQ9P021 101 aa9.73□□□□□ -0.85
SQSTM1-202ENST00000389805 A8MUU9 505 aa9.72□□□□□ -0.85
SQSTM1-202ENST00000389805 LINC00304Q8N9R0 145 aa9.72□□□□□ -0.85
SQSTM1-202ENST00000389805 KRTAP25-1Q3LHN0 102 aa9.69□□□□□ -0.86
SQSTM1-202ENST00000389805 APOBP04114 4563 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-202ENST00000389805 KMT2CQ8NEZ4 4911 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-202ENST00000389805 A0A1B0GVY2 172 aa9.67□□□□□ -0.86
SQSTM1-202ENST00000389805 A0A1B0GU33 70 aa9.62□□□□□ -0.87
SQSTM1-202ENST00000389805 KRTAP10-4P60372 401 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-202ENST00000389805 ROMO1P60602 79 aa9.62□□□□□ -0.87
SQSTM1-202ENST00000389805 RYR2Q92736 4967 aa9.62□□□□□ -0.87
SQSTM1-202ENST00000389805 C9orf92A6NGG3 77 aa9.6□□□□□ -0.87
SQSTM1-202ENST00000389805 PKHD1L1Q86WI1 4243 aa9.54□□□□□ -0.88
SQSTM1-202ENST00000389805 H1FX-AS1Q4G0G2 97 aa9.53□□□□□ -0.88
SQSTM1-202ENST00000389805 RPS29P62273 56 aaKnown RBP9.53□□□□□ -0.88
SQSTM1-202ENST00000389805 KRTAP3-1Q9BYR8 98 aa9.49□□□□□ -0.89
SQSTM1-202ENST00000389805 LRP1Q07954 4544 aaKnown RBP9.48□□□□□ -0.89
SQSTM1-202ENST00000389805 DMBT1Q9UGM3 2413 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-202ENST00000389805 P0C880 135 aa9.42□□□□□ -0.9
SQSTM1-202ENST00000389805 K7ERS5 55 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms