RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PANO1I0J062 215 aa8.56□□□□□ -1.04
RTF1-201ENST00000389629 Q5W150 140 aa8.56□□□□□ -1.04
RTF1-201ENST00000389629 A0A087X002 238 aa8.55□□□□□ -1.04
RTF1-201ENST00000389629 NOTCH2NLQ7Z3S9 236 aa8.55□□□□□ -1.04
RTF1-201ENST00000389629 Q6ZR54 194 aa8.55□□□□□ -1.04
RTF1-201ENST00000389629 C9orf92A6NGG3 77 aa8.54□□□□□ -1.04
RTF1-201ENST00000389629 ADM2Q7Z4H4 148 aa8.54□□□□□ -1.04
RTF1-201ENST00000389629 WWC2-AS2Q96NR7 200 aa8.52□□□□□ -1.05
RTF1-201ENST00000389629 VWFP04275 2813 aa8.51□□□□□ -1.05
RTF1-201ENST00000389629 TENM3Q9P273 2699 aa8.49□□□□□ -1.05
RTF1-201ENST00000389629 CSMD2Q7Z408 3487 aa8.49□□□□□ -1.05
RTF1-201ENST00000389629 CRIPTQ9P021 101 aa8.49□□□□□ -1.05
RTF1-201ENST00000389629 A0A0D9SG42 100 aa8.48□□□□□ -1.05
RTF1-201ENST00000389629 FLG2Q5D862 2391 aaPredicted RBP8.47□□□□□ -1.05
RTF1-201ENST00000389629 TENM1Q9UKZ4 2725 aa8.46□□□□□ -1.05
RTF1-201ENST00000389629 A0A1B0GU33 70 aa8.45□□□□□ -1.06
RTF1-201ENST00000389629 DMAC1Q96GE9 116 aa8.45□□□□□ -1.06
RTF1-201ENST00000389629 PLAC8Q9NZF1 115 aa8.44□□□□□ -1.06
RTF1-201ENST00000389629 KMT2BQ9UMN6 2715 aaPredicted RBP8.44□□□□□ -1.06
RTF1-201ENST00000389629 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
RTF1-201ENST00000389629 LINC00304Q8N9R0 145 aa8.42□□□□□ -1.06
RTF1-201ENST00000389629 VPS13CQ709C8 3753 aa8.37□□□□□ -1.07
RTF1-201ENST00000389629 SPATA8Q6RVD6 105 aa8.37□□□□□ -1.07
RTF1-201ENST00000389629 ZFHX3Q15911 3703 aa8.36□□□□□ -1.07
RTF1-201ENST00000389629 SMR3BP02814 79 aaPredicted RBP8.34□□□□□ -1.07
RTF1-201ENST00000389629 PDZD2O15018 2839 aa8.32□□□□□ -1.08
RTF1-201ENST00000389629 KRTAP13-1Q8IUC0 172 aa8.32□□□□□ -1.08
RTF1-201ENST00000389629 PKD1L1Q8TDX9 2849 aa8.31□□□□□ -1.08
RTF1-201ENST00000389629 TENM4Q6N022 2769 aa8.28□□□□□ -1.08
RTF1-201ENST00000389629 NBPF19A0A087WUL8 3843 aa8.28□□□□□ -1.08
RTF1-201ENST00000389629 ASB16-AS1Q495Z4 193 aa8.26□□□□□ -1.09
RTF1-201ENST00000389629 Q6ZRN7 208 aaPredicted RBP8.26□□□□□ -1.09
RTF1-201ENST00000389629 FBN1P35555 2871 aaKnown RBP8.24□□□□□ -1.09
RTF1-201ENST00000389629 OTOGQ6ZRI0 2925 aa8.19□□□□□ -1.1
RTF1-201ENST00000389629 KRTAP10-2P60368 255 aa8.19□□□□□ -1.1
RTF1-201ENST00000389629 H1FX-AS1Q4G0G2 97 aa8.15□□□□□ -1.11
RTF1-201ENST00000389629 KRTAP10-1P60331 282 aa8.12□□□□□ -1.11
RTF1-201ENST00000389629 KRTAP25-1Q3LHN0 102 aa8.12□□□□□ -1.11
RTF1-201ENST00000389629 ROMO1P60602 79 aa8.09□□□□□ -1.11
RTF1-201ENST00000389629 TRRAPQ9Y4A5 3859 aa8.08□□□□□ -1.12
RTF1-201ENST00000389629 TGP01266 2768 aa8.07□□□□□ -1.12
RTF1-201ENST00000389629 RPL37P61927 97 aaKnown RBP8.07□□□□□ -1.12
RTF1-201ENST00000389629 KRTAP13-2Q52LG2 175 aa8.06□□□□□ -1.12
RTF1-201ENST00000389629 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
RTF1-201ENST00000389629 ANK3Q12955 4377 aaKnown RBP8.05□□□□□ -1.12
RTF1-201ENST00000389629 TENM2Q9NT68 2774 aa8.02□□□□□ -1.13
RTF1-201ENST00000389629 ZNF469Q96JG9 3925 aaPredicted RBP7.95□□□□□ -1.14
RTF1-201ENST00000389629 A8MUU9 505 aa7.93□□□□□ -1.14
RTF1-201ENST00000389629 Q6ZSA8 131 aa7.93□□□□□ -1.14
RTF1-201ENST00000389629 S4R3F8 94 aa7.93□□□□□ -1.14
RTF1-201ENST00000389629 COX6B2Q6YFQ2 88 aa7.91□□□□□ -1.14
RTF1-201ENST00000389629 LUZP6Q538Z0 58 aa7.88□□□□□ -1.15
RTF1-201ENST00000389629 NDUFAF8A1L188 74 aa7.88□□□□□ -1.15
RTF1-201ENST00000389629 AKAP9Q99996 3911 aa7.87□□□□□ -1.15
RTF1-201ENST00000389629 H0YAA0 97 aa7.85□□□□□ -1.15
RTF1-201ENST00000389629 KRTAP13-3Q3SY46 172 aa7.85□□□□□ -1.15
RTF1-201ENST00000389629 KRTAP16-1A8MUX0 517 aa7.79□□□□□ -1.16
RTF1-201ENST00000389629 KRTAP1-4P0C5Y4 121 aa7.76□□□□□ -1.17
RTF1-201ENST00000389629 CAMK2N1Q7Z7J9 78 aa7.74□□□□□ -1.17
RTF1-201ENST00000389629 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
RTF1-201ENST00000389629 R4GN34 69 aa7.73□□□□□ -1.17
RTF1-201ENST00000389629 FBN3Q75N90 2809 aa7.72□□□□□ -1.17
RTF1-201ENST00000389629 RPS29P62273 56 aaKnown RBP7.72□□□□□ -1.17
RTF1-201ENST00000389629 COL7A1Q02388 2944 aa7.68□□□□□ -1.18
RTF1-201ENST00000389629 M0QZ58 72 aa7.68□□□□□ -1.18
RTF1-201ENST00000389629 CSMD3Q7Z407 3707 aa7.66□□□□□ -1.18
RTF1-201ENST00000389629 A0A0A0MQY5 61 aa7.64□□□□□ -1.19
RTF1-201ENST00000389629 C20orf166-AS1Q96NR2 134 aa7.64□□□□□ -1.19
RTF1-201ENST00000389629 MEGF8Q7Z7M0 2845 aa7.59□□□□□ -1.19
RTF1-201ENST00000389629 Q5VSD8 79 aa7.56□□□□□ -1.2
RTF1-201ENST00000389629 J3QL48 77 aa7.51□□□□□ -1.21
RTF1-201ENST00000389629 HUWE1Q7Z6Z7 4374 aaKnown RBP7.47□□□□□ -1.21
RTF1-201ENST00000389629 P0C880 135 aa7.42□□□□□ -1.22
RTF1-201ENST00000389629 KRTAP3-1Q9BYR8 98 aa7.37□□□□□ -1.23
RTF1-201ENST00000389629 TPRXLQ17RH7 258 aa7.34□□□□□ -1.23
RTF1-201ENST00000389629 DNAH10Q8IVF4 4471 aa7.34□□□□□ -1.23
RTF1-201ENST00000389629 PLAC4Q8WY50 150 aa7.31□□□□□ -1.24
RTF1-201ENST00000389629 XP32Q5T750 250 aa7.31□□□□□ -1.24
RTF1-201ENST00000389629 SEC61BP60468 96 aaKnown RBP7.27□□□□□ -1.25
RTF1-201ENST00000389629 KRTAP12-2P59991 146 aa7.25□□□□□ -1.25
RTF1-201ENST00000389629 KRTAP10-8P60410 259 aa7.23□□□□□ -1.25
RTF1-201ENST00000389629 KRTAP13-4Q3LI77 160 aa7.2□□□□□ -1.26
RTF1-201ENST00000389629 M0R2T5 61 aa7.17□□□□□ -1.26
RTF1-201ENST00000389629 PLECQ15149 4684 aaKnown RBP7.15□□□□□ -1.26
RTF1-201ENST00000389629 DNAH9Q9NYC9 4486 aa7.14□□□□□ -1.27
RTF1-201ENST00000389629 KRTAP10-6P60371 365 aaPredicted RBP7.12□□□□□ -1.27
RTF1-201ENST00000389629 KRTAP12-1P59990 96 aa7.1□□□□□ -1.27
RTF1-201ENST00000389629 DNAH1Q9P2D7 4330 aa7.1□□□□□ -1.27
RTF1-201ENST00000389629 A0A1B0GVY2 172 aa7.05□□□□□ -1.28
RTF1-201ENST00000389629 TNP1P09430 55 aa7.04□□□□□ -1.28
RTF1-201ENST00000389629 ANK2Q01484 3957 aa7.04□□□□□ -1.28
RTF1-201ENST00000389629 PP632Q6XCG6 107 aa7.02□□□□□ -1.29
RTF1-201ENST00000389629 DNAH11Q96DT5 4516 aa7□□□□□ -1.29
RTF1-201ENST00000389629 DNAH8Q96JB1 4490 aa6.98□□□□□ -1.29
RTF1-201ENST00000389629 KRTAP15-1Q3LI76 137 aa6.98□□□□□ -1.29
RTF1-201ENST00000389629 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
RTF1-201ENST00000389629 KRTAP3-2Q9BYR7 98 aa6.94□□□□□ -1.3
RTF1-201ENST00000389629 VPS13DQ5THJ4 4388 aa6.92□□□□□ -1.3
RTF1-201ENST00000389629 LYSTQ99698 3801 aa6.92□□□□□ -1.3
RTF1-201ENST00000389629 DNAH17Q9UFH2 4485 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms