RNA–Protein interactions for RNA: ENST00000381990.6

GPNMB-202, Transcript of glycoprotein nmb, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GPNMB, Length 2,763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-202ENST00000381990 LINC01558Q9Y6Z2 57 aa5.42□□□□□ -1.54
GPNMB-202ENST00000381990 KMT2AQ03164 3969 aa5.42□□□□□ -1.54
GPNMB-202ENST00000381990 NDUFS5O43920 106 aa5.42□□□□□ -1.54
GPNMB-202ENST00000381990 LCA10Q71F78 164 aa5.42□□□□□ -1.54
GPNMB-202ENST00000381990 DNAH6Q9C0G6 4158 aa5.41□□□□□ -1.54
GPNMB-202ENST00000381990 DNAH17Q9UFH2 4485 aa5.41□□□□□ -1.54
GPNMB-202ENST00000381990 SPTSSBQ8NFR3 76 aa5.4□□□□□ -1.54
GPNMB-202ENST00000381990 PLAC8Q9NZF1 115 aa5.4□□□□□ -1.54
GPNMB-202ENST00000381990 DNAH2Q9P225 4427 aa5.4□□□□□ -1.54
GPNMB-202ENST00000381990 KRTAP13-1Q8IUC0 172 aa5.39□□□□□ -1.55
GPNMB-202ENST00000381990 Q96NJ1 140 aa5.39□□□□□ -1.55
GPNMB-202ENST00000381990 ALMS1Q8TCU4 4167 aa5.39□□□□□ -1.55
GPNMB-202ENST00000381990 C8orf17Q9NRJ1 99 aa5.39□□□□□ -1.55
GPNMB-202ENST00000381990 PCOTHQ58A44 107 aa5.38□□□□□ -1.55
GPNMB-202ENST00000381990 A6NN06 94 aa5.38□□□□□ -1.55
GPNMB-202ENST00000381990 HECTD4Q9Y4D8 3996 aa5.37□□□□□ -1.55
GPNMB-202ENST00000381990 SRRM2Q9UQ35 2752 aaKnown RBP5.36□□□□□ -1.55
GPNMB-202ENST00000381990 A0A1B0GVX0 72 aa5.36□□□□□ -1.55
GPNMB-202ENST00000381990 SPAG11AQ6PDA7 123 aa5.36□□□□□ -1.55
GPNMB-202ENST00000381990 LINC00483Q53H64 154 aa5.36□□□□□ -1.55
GPNMB-202ENST00000381990 PSORS1C2Q9UIG4 136 aa5.35□□□□□ -1.55
GPNMB-202ENST00000381990 CDK2AP2O75956 126 aa5.35□□□□□ -1.55
GPNMB-202ENST00000381990 KRTAP10-2P60368 255 aa5.35□□□□□ -1.55
GPNMB-202ENST00000381990 MRPL34Q9BQ48 92 aaKnown RBP5.35□□□□□ -1.55
GPNMB-202ENST00000381990 ZNF706Q9Y5V0 76 aaPredicted RBP5.34□□□□□ -1.55
GPNMB-202ENST00000381990 HRES1P13985 223 aa5.34□□□□□ -1.55
GPNMB-202ENST00000381990 RBM12B-AS1Q9P1G2 102 aa5.33□□□□□ -1.56
GPNMB-202ENST00000381990 IGHV6-1A0A0B4J1U7 121 aa5.33□□□□□ -1.56
GPNMB-202ENST00000381990 IGLV9-49A0A0B4J1Y8 123 aa5.33□□□□□ -1.56
GPNMB-202ENST00000381990 C7orf65Q6ZTY9 151 aa5.33□□□□□ -1.56
GPNMB-202ENST00000381990 ZNF861PO60384 105 aa5.31□□□□□ -1.56
GPNMB-202ENST00000381990 FRAS1Q86XX4 4008 aa5.3□□□□□ -1.56
GPNMB-202ENST00000381990 Q6ZSA8 131 aa5.3□□□□□ -1.56
GPNMB-202ENST00000381990 CIRBP-AS1Q8TBR5 109 aa5.3□□□□□ -1.56
GPNMB-202ENST00000381990 KRTAP10-1P60331 282 aa5.29□□□□□ -1.56
GPNMB-202ENST00000381990 DNAH11Q96DT5 4516 aa5.29□□□□□ -1.56
GPNMB-202ENST00000381990 SPINK7P58062 85 aa5.28□□□□□ -1.56
GPNMB-202ENST00000381990 IGLV7-43P04211 117 aa5.28□□□□□ -1.56
GPNMB-202ENST00000381990 DNAH8Q96JB1 4490 aa5.27□□□□□ -1.57
GPNMB-202ENST00000381990 ACYP2P14621 99 aa5.27□□□□□ -1.57
GPNMB-202ENST00000381990 HYDINQ4G0P3 5121 aa5.26□□□□□ -1.57
GPNMB-202ENST00000381990 DNAH5Q8TE73 4624 aa5.26□□□□□ -1.57
GPNMB-202ENST00000381990 KRTAP13-3Q3SY46 172 aa5.26□□□□□ -1.57
GPNMB-202ENST00000381990 FAT2Q9NYQ8 4349 aa5.25□□□□□ -1.57
GPNMB-202ENST00000381990 PKD1P98161 4303 aa5.24□□□□□ -1.57
GPNMB-202ENST00000381990 LCE2BO14633 110 aa5.24□□□□□ -1.57
GPNMB-202ENST00000381990 A0A087X002 238 aa5.23□□□□□ -1.57
GPNMB-202ENST00000381990 NOTCH2NLQ7Z3S9 236 aa5.23□□□□□ -1.57
GPNMB-202ENST00000381990 C8orf87E5RJ46 101 aa5.22□□□□□ -1.57
GPNMB-202ENST00000381990 PRR26Q8N8Z3 221 aa5.22□□□□□ -1.57
GPNMB-202ENST00000381990 DMAC1Q96GE9 116 aa5.22□□□□□ -1.57
GPNMB-202ENST00000381990 ANAPC11Q9NYG5 84 aa5.22□□□□□ -1.57
GPNMB-202ENST00000381990 SACSQ9NZJ4 4579 aa5.22□□□□□ -1.57
GPNMB-202ENST00000381990 Q5W150 140 aa5.21□□□□□ -1.57
GPNMB-202ENST00000381990 FAM229AH3BQW9 127 aa5.18□□□□□ -1.58
GPNMB-202ENST00000381990 SPINK6Q6UWN8 80 aa5.18□□□□□ -1.58
GPNMB-202ENST00000381990 A0A1B0GU69 56 aa5.17□□□□□ -1.58
GPNMB-202ENST00000381990 A0A1B0GVY2 172 aa5.16□□□□□ -1.58
GPNMB-202ENST00000381990 PLA2G1BP04054 148 aaKnown RBP5.16□□□□□ -1.58
GPNMB-202ENST00000381990 LINC00313P59037 77 aa5.16□□□□□ -1.58
GPNMB-202ENST00000381990 SSBP3-AS1Q7Z2R9 100 aa5.16□□□□□ -1.58
GPNMB-202ENST00000381990 SPATA8Q6RVD6 105 aa5.16□□□□□ -1.58
GPNMB-202ENST00000381990 LRP1BQ9NZR2 4599 aa5.16□□□□□ -1.58
GPNMB-202ENST00000381990 UQCR11O14957 56 aa5.13□□□□□ -1.59
GPNMB-202ENST00000381990 IGKV2-30P06310 120 aa5.13□□□□□ -1.59
GPNMB-202ENST00000381990 PKHD1P08F94 4074 aa5.12□□□□□ -1.59
GPNMB-202ENST00000381990 KRTAP1-4P0C5Y4 121 aa5.12□□□□□ -1.59
GPNMB-202ENST00000381990 KRTAP13-2Q52LG2 175 aa5.11□□□□□ -1.59
GPNMB-202ENST00000381990 MIR22HGQ0VDD5 57 aa5.1□□□□□ -1.59
GPNMB-202ENST00000381990 RYR2Q92736 4967 aa5.1□□□□□ -1.59
GPNMB-202ENST00000381990 DYNC1H1Q14204 4646 aaKnown RBP5.09□□□□□ -1.59
GPNMB-202ENST00000381990 VPS13BQ7Z7G8 4022 aa5.08□□□□□ -1.6
GPNMB-202ENST00000381990 PRAC1Q96KF2 57 aa5.07□□□□□ -1.6
GPNMB-202ENST00000381990 SMR3BP02814 79 aaPredicted RBP5.07□□□□□ -1.6
GPNMB-202ENST00000381990 LINC01554Q52M75 96 aa5.06□□□□□ -1.6
GPNMB-202ENST00000381990 KRTAP16-1A8MUX0 517 aa5.05□□□□□ -1.6
GPNMB-202ENST00000381990 KMT2CQ8NEZ4 4911 aaKnown RBP5.05□□□□□ -1.6
GPNMB-202ENST00000381990 TYMSOSQ8TAI1 123 aa5.04□□□□□ -1.6
GPNMB-202ENST00000381990 ADM2Q7Z4H4 148 aa5.04□□□□□ -1.6
GPNMB-202ENST00000381990 KRTAP10-4P60372 401 aaPredicted RBP5.03□□□□□ -1.6
GPNMB-202ENST00000381990 IGKV2D-30A0A075B6S6 120 aa5.03□□□□□ -1.6
GPNMB-202ENST00000381990 RETNLBQ9BQ08 111 aa5.03□□□□□ -1.6
GPNMB-202ENST00000381990 APOBP04114 4563 aaKnown RBP5.02□□□□□ -1.61
GPNMB-202ENST00000381990 SPINK1P00995 79 aa5.01□□□□□ -1.61
GPNMB-202ENST00000381990 LCE2CQ5TA81 110 aa5□□□□□ -1.61
GPNMB-202ENST00000381990 LINC00304Q8N9R0 145 aa4.99□□□□□ -1.61
GPNMB-202ENST00000381990 RPS29P62273 56 aaKnown RBP4.98□□□□□ -1.61
GPNMB-202ENST00000381990 FAT1Q14517 4588 aa4.97□□□□□ -1.61
GPNMB-202ENST00000381990 CSAG1Q6PB30 78 aa4.94□□□□□ -1.62
GPNMB-202ENST00000381990 LCE2AQ5TA79 106 aaPredicted RBP4.92□□□□□ -1.62
GPNMB-202ENST00000381990 RYR3Q15413 4870 aa4.91□□□□□ -1.62
GPNMB-202ENST00000381990 Q5VSD8 79 aa4.9□□□□□ -1.62
GPNMB-202ENST00000381990 PKHD1L1Q86WI1 4243 aa4.88□□□□□ -1.63
GPNMB-202ENST00000381990 A8MUU9 505 aa4.88□□□□□ -1.63
GPNMB-202ENST00000381990 Q8N1X5 172 aa4.87□□□□□ -1.63
GPNMB-202ENST00000381990 HSPG2P98160 4391 aa4.87□□□□□ -1.63
GPNMB-202ENST00000381990 H0YAA0 97 aa4.87□□□□□ -1.63
GPNMB-202ENST00000381990 LORP23490 312 aaPredicted RBP4.85□□□□□ -1.63
GPNMB-202ENST00000381990 KRTAP10-8P60410 259 aa4.84□□□□□ -1.63
GPNMB-202ENST00000381990 RYR1P21817 5038 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms