RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CASC10Q5T4H9 136 aa7.17□□□□□ -1.26
NPHP4-202ENST00000378161 NIPBLQ6KC79 2804 aaeCLIP7.17□□□□□ -1.26
NPHP4-202ENST00000378161 A0A1B0GU33 70 aa7.16□□□□□ -1.26
NPHP4-202ENST00000378161 HIVEP1P15822 2718 aa7.15□□□□□ -1.26
NPHP4-202ENST00000378161 K7EIL1 84 aa7.12□□□□□ -1.27
NPHP4-202ENST00000378161 J3QL48 77 aa7.1□□□□□ -1.27
NPHP4-202ENST00000378161 KRTAP26-1Q6PEX3 210 aa7.08□□□□□ -1.28
NPHP4-202ENST00000378161 KRTAP4-16G5E9R7 235 aaPredicted RBP7.06□□□□□ -1.28
NPHP4-202ENST00000378161 LINC00304Q8N9R0 145 aa7.04□□□□□ -1.28
NPHP4-202ENST00000378161 SPACA4Q8TDM5 124 aa7.02□□□□□ -1.29
NPHP4-202ENST00000378161 Q5W150 140 aa7.01□□□□□ -1.29
NPHP4-202ENST00000378161 PSORS1C2Q9UIG4 136 aa7□□□□□ -1.29
NPHP4-202ENST00000378161 APLNQ9ULZ1 77 aa7□□□□□ -1.29
NPHP4-202ENST00000378161 KRTAP11-1Q8IUC1 163 aa7□□□□□ -1.29
NPHP4-202ENST00000378161 DMBT1Q9UGM3 2413 aaPredicted RBP6.99□□□□□ -1.29
NPHP4-202ENST00000378161 Q8N1X5 172 aa6.99□□□□□ -1.29
NPHP4-202ENST00000378161 A0A087WTM6 91 aa6.98□□□□□ -1.29
NPHP4-202ENST00000378161 CSMD2Q7Z408 3487 aa6.98□□□□□ -1.29
NPHP4-202ENST00000378161 SPRR1BP22528 89 aa6.98□□□□□ -1.29
NPHP4-202ENST00000378161 P0C880 135 aa6.97□□□□□ -1.29
NPHP4-202ENST00000378161 KMT2BQ9UMN6 2715 aaPredicted RBP6.97□□□□□ -1.29
NPHP4-202ENST00000378161 PANO1I0J062 215 aa6.96□□□□□ -1.29
NPHP4-202ENST00000378161 ANAPC11Q9NYG5 84 aa6.95□□□□□ -1.3
NPHP4-202ENST00000378161 A0A0D9SG42 100 aa6.94□□□□□ -1.3
NPHP4-202ENST00000378161 H1FX-AS1Q4G0G2 97 aa6.92□□□□□ -1.3
NPHP4-202ENST00000378161 BSNQ9UPA5 3926 aa6.92□□□□□ -1.3
NPHP4-202ENST00000378161 STAB2Q8WWQ8 2551 aa6.92□□□□□ -1.3
NPHP4-202ENST00000378161 TYMSOSQ8TAI1 123 aa6.92□□□□□ -1.3
NPHP4-202ENST00000378161 TENM4Q6N022 2769 aa6.91□□□□□ -1.3
NPHP4-202ENST00000378161 ZFHX3Q15911 3703 aa6.91□□□□□ -1.3
NPHP4-202ENST00000378161 Q96NJ1 140 aa6.89□□□□□ -1.31
NPHP4-202ENST00000378161 RPL37P61927 97 aaKnown RBP6.89□□□□□ -1.31
NPHP4-202ENST00000378161 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.87□□□□□ -1.31
NPHP4-202ENST00000378161 NBPF19A0A087WUL8 3843 aa6.86□□□□□ -1.31
NPHP4-202ENST00000378161 KRTAP1-5Q9BYS1 174 aa6.85□□□□□ -1.31
NPHP4-202ENST00000378161 TENM1Q9UKZ4 2725 aa6.85□□□□□ -1.31
NPHP4-202ENST00000378161 FBN1P35555 2871 aaKnown RBP6.84□□□□□ -1.32
NPHP4-202ENST00000378161 VWFP04275 2813 aa6.83□□□□□ -1.32
NPHP4-202ENST00000378161 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
NPHP4-202ENST00000378161 OTOGQ6ZRI0 2925 aa6.79□□□□□ -1.32
NPHP4-202ENST00000378161 Q6ZSA8 131 aa6.79□□□□□ -1.32
NPHP4-202ENST00000378161 H0YAA0 97 aa6.78□□□□□ -1.32
NPHP4-202ENST00000378161 VPS13CQ709C8 3753 aa6.76□□□□□ -1.33
NPHP4-202ENST00000378161 KRTAP7-1Q8IUC3 87 aa6.76□□□□□ -1.33
NPHP4-202ENST00000378161 PDZD2O15018 2839 aa6.76□□□□□ -1.33
NPHP4-202ENST00000378161 TENM3Q9P273 2699 aa6.7□□□□□ -1.34
NPHP4-202ENST00000378161 COX6B2Q6YFQ2 88 aa6.68□□□□□ -1.34
NPHP4-202ENST00000378161 C10orf95Q9H7T3 257 aa6.68□□□□□ -1.34
NPHP4-202ENST00000378161 SMR3BP02814 79 aaPredicted RBP6.66□□□□□ -1.34
NPHP4-202ENST00000378161 C9orf92A6NGG3 77 aa6.64□□□□□ -1.35
NPHP4-202ENST00000378161 PKD1L1Q8TDX9 2849 aa6.6□□□□□ -1.35
NPHP4-202ENST00000378161 KRTAP13-1Q8IUC0 172 aa6.58□□□□□ -1.36
NPHP4-202ENST00000378161 KRTAP15-1Q3LI76 137 aa6.58□□□□□ -1.36
NPHP4-202ENST00000378161 Q6ZRN7 208 aaPredicted RBP6.55□□□□□ -1.36
NPHP4-202ENST00000378161 KRTAP13-3Q3SY46 172 aa6.54□□□□□ -1.36
NPHP4-202ENST00000378161 TENM2Q9NT68 2774 aa6.54□□□□□ -1.36
NPHP4-202ENST00000378161 TPRXLQ17RH7 258 aa6.53□□□□□ -1.36
NPHP4-202ENST00000378161 TRRAPQ9Y4A5 3859 aa6.52□□□□□ -1.37
NPHP4-202ENST00000378161 KRTAP21-3Q3LHN1 58 aa6.52□□□□□ -1.37
NPHP4-202ENST00000378161 PLAC4Q8WY50 150 aa6.51□□□□□ -1.37
NPHP4-202ENST00000378161 KRTAP10-2P60368 255 aa6.46□□□□□ -1.38
NPHP4-202ENST00000378161 ZNF469Q96JG9 3925 aaPredicted RBP6.46□□□□□ -1.38
NPHP4-202ENST00000378161 KRTAP10-1P60331 282 aa6.45□□□□□ -1.38
NPHP4-202ENST00000378161 S4R3F8 94 aa6.41□□□□□ -1.38
NPHP4-202ENST00000378161 TGP01266 2768 aa6.41□□□□□ -1.38
NPHP4-202ENST00000378161 M0R2T5 61 aa6.36□□□□□ -1.39
NPHP4-202ENST00000378161 KRTAP13-2Q52LG2 175 aa6.35□□□□□ -1.39
NPHP4-202ENST00000378161 RPS29P62273 56 aaKnown RBP6.31□□□□□ -1.4
NPHP4-202ENST00000378161 ANK3Q12955 4377 aaKnown RBP6.3□□□□□ -1.4
NPHP4-202ENST00000378161 SRRM2Q9UQ35 2752 aaKnown RBP6.26□□□□□ -1.41
NPHP4-202ENST00000378161 AKAP9Q99996 3911 aa6.26□□□□□ -1.41
NPHP4-202ENST00000378161 Q5VSD8 79 aa6.25□□□□□ -1.41
NPHP4-202ENST00000378161 M0QZ58 72 aa6.14□□□□□ -1.43
NPHP4-202ENST00000378161 KRTAP1-4P0C5Y4 121 aa6.14□□□□□ -1.43
NPHP4-202ENST00000378161 KRTAP10-8P60410 259 aa6.13□□□□□ -1.43
NPHP4-202ENST00000378161 CSMD3Q7Z407 3707 aa6.12□□□□□ -1.43
NPHP4-202ENST00000378161 R4GN34 69 aa6.11□□□□□ -1.43
NPHP4-202ENST00000378161 FBN3Q75N90 2809 aa6.09□□□□□ -1.43
NPHP4-202ENST00000378161 PP632Q6XCG6 107 aa6.09□□□□□ -1.43
NPHP4-202ENST00000378161 PRO2289Q9P1D8 64 aa6.08□□□□□ -1.44
NPHP4-202ENST00000378161 COL7A1Q02388 2944 aa6.06□□□□□ -1.44
NPHP4-202ENST00000378161 KRTAP12-2P59991 146 aa6.05□□□□□ -1.44
NPHP4-202ENST00000378161 XP32Q5T750 250 aa6.02□□□□□ -1.45
NPHP4-202ENST00000378161 MEGF8Q7Z7M0 2845 aa5.99□□□□□ -1.45
NPHP4-202ENST00000378161 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
NPHP4-202ENST00000378161 KRTAP12-1P59990 96 aa5.96□□□□□ -1.46
NPHP4-202ENST00000378161 KRTAP3-1Q9BYR8 98 aa5.95□□□□□ -1.46
NPHP4-202ENST00000378161 KRTAP10-6P60371 365 aaPredicted RBP5.92□□□□□ -1.46
NPHP4-202ENST00000378161 INE1O15225 51 aa5.89□□□□□ -1.47
NPHP4-202ENST00000378161 ALMS1Q8TCU4 4167 aa5.84□□□□□ -1.47
NPHP4-202ENST00000378161 HUWE1Q7Z6Z7 4374 aaKnown RBP5.77□□□□□ -1.49
NPHP4-202ENST00000378161 TNP1P09430 55 aa5.75□□□□□ -1.49
NPHP4-202ENST00000378161 KRTAP3-2Q9BYR7 98 aa5.72□□□□□ -1.49
NPHP4-202ENST00000378161 A0A1B0GVY2 172 aa5.68□□□□□ -1.5
NPHP4-202ENST00000378161 DNAH10Q8IVF4 4471 aa5.65□□□□□ -1.5
NPHP4-202ENST00000378161 ANK2Q01484 3957 aa5.63□□□□□ -1.51
NPHP4-202ENST00000378161 CMYA5Q8N3K9 4069 aa5.62□□□□□ -1.51
NPHP4-202ENST00000378161 DNAH9Q9NYC9 4486 aa5.6□□□□□ -1.51
NPHP4-202ENST00000378161 PLECQ15149 4684 aaKnown RBP5.6□□□□□ -1.51
NPHP4-202ENST00000378161 DNHD1Q96M86 4753 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms