RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 MMP24-AS1A0A0U1RRL7 71 aa8.7□□□□□ -1.02
TCOF1-202ENST00000377797 PKD1L1Q8TDX9 2849 aa8.69□□□□□ -1.02
TCOF1-202ENST00000377797 LINC00483Q53H64 154 aa8.68□□□□□ -1.02
TCOF1-202ENST00000377797 LCA10Q71F78 164 aa8.67□□□□□ -1.02
TCOF1-202ENST00000377797 H3BS24 57 aa8.65□□□□□ -1.02
TCOF1-202ENST00000377797 MIR22HGQ0VDD5 57 aa8.65□□□□□ -1.02
TCOF1-202ENST00000377797 SPANXA2-OT1Q8N9U9 137 aa8.64□□□□□ -1.03
TCOF1-202ENST00000377797 SPINT4Q6UDR6 99 aa8.62□□□□□ -1.03
TCOF1-202ENST00000377797 TENM2Q9NT68 2774 aa8.62□□□□□ -1.03
TCOF1-202ENST00000377797 A0A087X002 238 aa8.59□□□□□ -1.03
TCOF1-202ENST00000377797 TGP01266 2768 aa8.59□□□□□ -1.03
TCOF1-202ENST00000377797 Q1T7F1 81 aa8.57□□□□□ -1.04
TCOF1-202ENST00000377797 CDC42SE1Q9NRR8 79 aa8.56□□□□□ -1.04
TCOF1-202ENST00000377797 KRTAP13-1Q8IUC0 172 aa8.56□□□□□ -1.04
TCOF1-202ENST00000377797 Q5VSD8 79 aa8.55□□□□□ -1.04
TCOF1-202ENST00000377797 FLG2Q5D862 2391 aaPredicted RBP8.54□□□□□ -1.04
TCOF1-202ENST00000377797 IGLV7-46A0A075B6I9 117 aa8.54□□□□□ -1.04
TCOF1-202ENST00000377797 ANK3Q12955 4377 aaKnown RBP8.54□□□□□ -1.04
TCOF1-202ENST00000377797 Q8N1X5 172 aa8.53□□□□□ -1.04
TCOF1-202ENST00000377797 Q8N9P0 234 aaPredicted RBP8.49□□□□□ -1.05
TCOF1-202ENST00000377797 HRES1P13985 223 aa8.48□□□□□ -1.05
TCOF1-202ENST00000377797 TRRAPQ9Y4A5 3859 aa8.47□□□□□ -1.05
TCOF1-202ENST00000377797 KRTAP29-1A8MX34 341 aaPredicted RBP8.46□□□□□ -1.05
TCOF1-202ENST00000377797 ZCCHC13Q8WW36 166 aaKnown RBP8.45□□□□□ -1.06
TCOF1-202ENST00000377797 Q5W150 140 aa8.44□□□□□ -1.06
TCOF1-202ENST00000377797 CRIPTQ9P021 101 aa8.44□□□□□ -1.06
TCOF1-202ENST00000377797 NOTCH2NLQ7Z3S9 236 aa8.41□□□□□ -1.06
TCOF1-202ENST00000377797 KRTAP13-2Q52LG2 175 aa8.41□□□□□ -1.06
TCOF1-202ENST00000377797 Q75L30 129 aa8.4□□□□□ -1.06
TCOF1-202ENST00000377797 LINC01554Q52M75 96 aa8.4□□□□□ -1.07
TCOF1-202ENST00000377797 COX6B2Q6YFQ2 88 aa8.39□□□□□ -1.07
TCOF1-202ENST00000377797 PRAC1Q96KF2 57 aa8.38□□□□□ -1.07
TCOF1-202ENST00000377797 Q6ZSA8 131 aa8.36□□□□□ -1.07
TCOF1-202ENST00000377797 Q5VV11 94 aa8.36□□□□□ -1.07
TCOF1-202ENST00000377797 ASB16-AS1Q495Z4 193 aa8.34□□□□□ -1.07
TCOF1-202ENST00000377797 VPS13CQ709C8 3753 aa8.34□□□□□ -1.07
TCOF1-202ENST00000377797 LINC01558Q9Y6Z2 57 aa8.33□□□□□ -1.08
TCOF1-202ENST00000377797 SPINK7P58062 85 aa8.33□□□□□ -1.08
TCOF1-202ENST00000377797 A0A0D9SG42 100 aa8.3□□□□□ -1.08
TCOF1-202ENST00000377797 ZNF469Q96JG9 3925 aaPredicted RBP8.27□□□□□ -1.09
TCOF1-202ENST00000377797 RPS29P62273 56 aaKnown RBP8.24□□□□□ -1.09
TCOF1-202ENST00000377797 A0A1B0GU33 70 aa8.22□□□□□ -1.09
TCOF1-202ENST00000377797 KRTAP1-4P0C5Y4 121 aa8.19□□□□□ -1.1
TCOF1-202ENST00000377797 DMAC1Q96GE9 116 aa8.17□□□□□ -1.1
TCOF1-202ENST00000377797 FBN3Q75N90 2809 aa8.16□□□□□ -1.1
TCOF1-202ENST00000377797 CSAG1Q6PB30 78 aa8.13□□□□□ -1.11
TCOF1-202ENST00000377797 A8MU10 97 aa8.12□□□□□ -1.11
TCOF1-202ENST00000377797 SEC61BP60468 96 aaKnown RBP8.12□□□□□ -1.11
TCOF1-202ENST00000377797 S4R3F8 94 aa8.06□□□□□ -1.12
TCOF1-202ENST00000377797 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
TCOF1-202ENST00000377797 A6NN06 94 aa8.06□□□□□ -1.12
TCOF1-202ENST00000377797 MEGF8Q7Z7M0 2845 aa8.05□□□□□ -1.12
TCOF1-202ENST00000377797 LUZP6Q538Z0 58 aa8.04□□□□□ -1.12
TCOF1-202ENST00000377797 AKAP9Q99996 3911 aa8.01□□□□□ -1.13
TCOF1-202ENST00000377797 COL7A1Q02388 2944 aa7.98□□□□□ -1.13
TCOF1-202ENST00000377797 A0A1B0GVY2 172 aa7.97□□□□□ -1.13
TCOF1-202ENST00000377797 A8MUU9 505 aa7.95□□□□□ -1.14
TCOF1-202ENST00000377797 RPL37P61927 97 aaKnown RBP7.94□□□□□ -1.14
TCOF1-202ENST00000377797 ADM2Q7Z4H4 148 aa7.93□□□□□ -1.14
TCOF1-202ENST00000377797 C20orf166-AS1Q96NR2 134 aa7.93□□□□□ -1.14
TCOF1-202ENST00000377797 M0R2T5 61 aa7.92□□□□□ -1.14
TCOF1-202ENST00000377797 CAMK2N1Q7Z7J9 78 aa7.91□□□□□ -1.14
TCOF1-202ENST00000377797 ROMO1P60602 79 aa7.84□□□□□ -1.16
TCOF1-202ENST00000377797 H1FX-AS1Q4G0G2 97 aa7.84□□□□□ -1.16
TCOF1-202ENST00000377797 KRTAP16-1A8MUX0 517 aa7.83□□□□□ -1.16
TCOF1-202ENST00000377797 HUWE1Q7Z6Z7 4374 aaKnown RBP7.83□□□□□ -1.16
TCOF1-202ENST00000377797 R4GN34 69 aa7.82□□□□□ -1.16
TCOF1-202ENST00000377797 SPATA8Q6RVD6 105 aa7.82□□□□□ -1.16
TCOF1-202ENST00000377797 XP32Q5T750 250 aa7.79□□□□□ -1.16
TCOF1-202ENST00000377797 KRTAP10-8P60410 259 aa7.75□□□□□ -1.17
TCOF1-202ENST00000377797 A0A0A0MQY5 61 aa7.73□□□□□ -1.17
TCOF1-202ENST00000377797 M0QZ58 72 aa7.71□□□□□ -1.18
TCOF1-202ENST00000377797 KRTAP13-3Q3SY46 172 aa7.67□□□□□ -1.18
TCOF1-202ENST00000377797 TPRXLQ17RH7 258 aa7.66□□□□□ -1.18
TCOF1-202ENST00000377797 KRTAP25-1Q3LHN0 102 aa7.63□□□□□ -1.19
TCOF1-202ENST00000377797 DNAH9Q9NYC9 4486 aa7.62□□□□□ -1.19
TCOF1-202ENST00000377797 CSMD3Q7Z407 3707 aa7.58□□□□□ -1.2
TCOF1-202ENST00000377797 NDUFAF8A1L188 74 aa7.56□□□□□ -1.2
TCOF1-202ENST00000377797 DNHD1Q96M86 4753 aa7.54□□□□□ -1.2
TCOF1-202ENST00000377797 PLECQ15149 4684 aaKnown RBP7.44□□□□□ -1.22
TCOF1-202ENST00000377797 KRTAP10-4P60372 401 aaPredicted RBP7.42□□□□□ -1.22
TCOF1-202ENST00000377797 PLAC4Q8WY50 150 aa7.36□□□□□ -1.23
TCOF1-202ENST00000377797 MT1HL1P0DM35 61 aa7.35□□□□□ -1.23
TCOF1-202ENST00000377797 DNAH1Q9P2D7 4330 aa7.31□□□□□ -1.24
TCOF1-202ENST00000377797 H0YAA0 97 aa7.31□□□□□ -1.24
TCOF1-202ENST00000377797 P0C880 135 aa7.29□□□□□ -1.24
TCOF1-202ENST00000377797 PRKDCP78527 4128 aaKnown RBP7.29□□□□□ -1.24
TCOF1-202ENST00000377797 KRTAP3-1Q9BYR8 98 aa7.27□□□□□ -1.25
TCOF1-202ENST00000377797 STARD9Q9P2P6 4700 aa7.27□□□□□ -1.25
TCOF1-202ENST00000377797 DNAH11Q96DT5 4516 aa7.26□□□□□ -1.25
TCOF1-202ENST00000377797 DNAH10Q8IVF4 4471 aa7.26□□□□□ -1.25
TCOF1-202ENST00000377797 DNAH5Q8TE73 4624 aa7.26□□□□□ -1.25
TCOF1-202ENST00000377797 VPS13DQ5THJ4 4388 aa7.26□□□□□ -1.25
TCOF1-202ENST00000377797 KRTAP4-5Q9BYR2 181 aa7.24□□□□□ -1.25
TCOF1-202ENST00000377797 ANK2Q01484 3957 aa7.22□□□□□ -1.25
TCOF1-202ENST00000377797 ALMS1Q8TCU4 4167 aa7.22□□□□□ -1.25
TCOF1-202ENST00000377797 C10orf95Q9H7T3 257 aa7.17□□□□□ -1.26
TCOF1-202ENST00000377797 DNAH17Q9UFH2 4485 aa7.11□□□□□ -1.27
TCOF1-202ENST00000377797 TNP1P09430 55 aa7.08□□□□□ -1.28
TCOF1-202ENST00000377797 KRTAP10-10P60014 251 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms