RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 KRTAP10-2P60368 255 aa7.31□□□□□ -1.24
VPS13A-204ENST00000376634 KRTAP25-1Q3LHN0 102 aa7.31□□□□□ -1.24
VPS13A-204ENST00000376634 BRCA2P51587 3418 aa7.31□□□□□ -1.24
VPS13A-204ENST00000376634 TGP01266 2768 aa7.27□□□□□ -1.25
VPS13A-204ENST00000376634 DNAH14Q0VDD8 3507 aa7.26□□□□□ -1.25
VPS13A-204ENST00000376634 VWFP04275 2813 aa7.26□□□□□ -1.25
VPS13A-204ENST00000376634 BOD1L1Q8NFC6 3051 aa7.25□□□□□ -1.25
VPS13A-204ENST00000376634 NDUFAF8A1L188 74 aa7.25□□□□□ -1.25
VPS13A-204ENST00000376634 A8MUU9 505 aa7.24□□□□□ -1.25
VPS13A-204ENST00000376634 UNC80Q8N2C7 3258 aa7.22□□□□□ -1.25
VPS13A-204ENST00000376634 TENM4Q6N022 2769 aa7.22□□□□□ -1.25
VPS13A-204ENST00000376634 FBN2P35556 2912 aa7.21□□□□□ -1.26
VPS13A-204ENST00000376634 A6NN06 94 aa7.2□□□□□ -1.26
VPS13A-204ENST00000376634 A0A087X002 238 aa7.2□□□□□ -1.26
VPS13A-204ENST00000376634 PKD1L1Q8TDX9 2849 aa7.2□□□□□ -1.26
VPS13A-204ENST00000376634 KRTAP4-16G5E9R7 235 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-204ENST00000376634 ATMQ13315 3056 aa7.18□□□□□ -1.26
VPS13A-204ENST00000376634 RPS29P62273 56 aaKnown RBP7.18□□□□□ -1.26
VPS13A-204ENST00000376634 ADGRG4Q8IZF6 3080 aa7.18□□□□□ -1.26
VPS13A-204ENST00000376634 KRTAP29-1A8MX34 341 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-204ENST00000376634 C10orf95Q9H7T3 257 aa7.14□□□□□ -1.27
VPS13A-204ENST00000376634 CELSR1Q9NYQ6 3014 aa7.14□□□□□ -1.27
VPS13A-204ENST00000376634 DMXL1Q9Y485 3027 aa7.14□□□□□ -1.27
VPS13A-204ENST00000376634 A8MU10 97 aa7.13□□□□□ -1.27
VPS13A-204ENST00000376634 CDH23Q9H251 3354 aa7.09□□□□□ -1.27
VPS13A-204ENST00000376634 VCANP13611 3396 aa7.08□□□□□ -1.28
VPS13A-204ENST00000376634 NOTCH2NLQ7Z3S9 236 aa7.07□□□□□ -1.28
VPS13A-204ENST00000376634 TNP1P09430 55 aa7.07□□□□□ -1.28
VPS13A-204ENST00000376634 MXRA5Q9NR99 2828 aa7.06□□□□□ -1.28
VPS13A-204ENST00000376634 CFAP47Q6ZTR5 3102 aa7.04□□□□□ -1.28
VPS13A-204ENST00000376634 HRNRQ86YZ3 2850 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-204ENST00000376634 SRRM2Q9UQ35 2752 aaKnown RBP7.01□□□□□ -1.29
VPS13A-204ENST00000376634 SPEGQ15772 3267 aa7□□□□□ -1.29
VPS13A-204ENST00000376634 PP632Q6XCG6 107 aa6.96□□□□□ -1.3
VPS13A-204ENST00000376634 TENM2Q9NT68 2774 aa6.92□□□□□ -1.3
VPS13A-204ENST00000376634 KRTAP11-1Q8IUC1 163 aa6.92□□□□□ -1.3
VPS13A-204ENST00000376634 Q6ZRN7 208 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-204ENST00000376634 KRTAP13-2Q52LG2 175 aa6.9□□□□□ -1.3
VPS13A-204ENST00000376634 SPTBN5Q9NRC6 3674 aaKnown RBP6.89□□□□□ -1.31
VPS13A-204ENST00000376634 COL7A1Q02388 2944 aa6.87□□□□□ -1.31
VPS13A-204ENST00000376634 NBPF19A0A087WUL8 3843 aa6.85□□□□□ -1.31
VPS13A-204ENST00000376634 EYSQ5T1H1 3165 aa6.85□□□□□ -1.31
VPS13A-204ENST00000376634 SZT2Q5T011 3432 aa6.84□□□□□ -1.31
VPS13A-204ENST00000376634 WDFY3Q8IZQ1 3526 aa6.82□□□□□ -1.32
VPS13A-204ENST00000376634 KRTAP13-1Q8IUC0 172 aa6.82□□□□□ -1.32
VPS13A-204ENST00000376634 KRTAP10-8P60410 259 aa6.82□□□□□ -1.32
VPS13A-204ENST00000376634 MYO15AQ9UKN7 3530 aa6.79□□□□□ -1.32
VPS13A-204ENST00000376634 KRTAP7-1Q8IUC3 87 aa6.74□□□□□ -1.33
VPS13A-204ENST00000376634 PRO2289Q9P1D8 64 aa6.74□□□□□ -1.33
VPS13A-204ENST00000376634 P0C880 135 aa6.71□□□□□ -1.34
VPS13A-204ENST00000376634 H0YAA0 97 aa6.66□□□□□ -1.34
VPS13A-204ENST00000376634 ZFHX3Q15911 3703 aa6.66□□□□□ -1.34
VPS13A-204ENST00000376634 ZFHX4Q86UP3 3567 aa6.65□□□□□ -1.34
VPS13A-204ENST00000376634 XP32Q5T750 250 aa6.64□□□□□ -1.35
VPS13A-204ENST00000376634 MEGF8Q7Z7M0 2845 aa6.64□□□□□ -1.35
VPS13A-204ENST00000376634 A0A1B0GVY2 172 aa6.62□□□□□ -1.35
VPS13A-204ENST00000376634 LAMA5O15230 3695 aa6.61□□□□□ -1.35
VPS13A-204ENST00000376634 KRTAP10-10P60014 251 aa6.59□□□□□ -1.35
VPS13A-204ENST00000376634 DMDP11532 3685 aa6.59□□□□□ -1.35
VPS13A-204ENST00000376634 TPRXLQ17RH7 258 aa6.57□□□□□ -1.36
VPS13A-204ENST00000376634 FBN1P35555 2871 aaKnown RBP6.57□□□□□ -1.36
VPS13A-204ENST00000376634 SPENQ96T58 3664 aaKnown RBP6.56□□□□□ -1.36
VPS13A-204ENST00000376634 SMG1Q96Q15 3661 aaKnown RBP6.54□□□□□ -1.36
VPS13A-204ENST00000376634 ASPMQ8IZT6 3477 aa6.53□□□□□ -1.36
VPS13A-204ENST00000376634 KRTAP21-3Q3LHN1 58 aa6.52□□□□□ -1.37
VPS13A-204ENST00000376634 LOC400499M0QZD8 3231 aa6.48□□□□□ -1.37
VPS13A-204ENST00000376634 KRTAP1-4P0C5Y4 121 aa6.45□□□□□ -1.38
VPS13A-204ENST00000376634 FBN3Q75N90 2809 aa6.45□□□□□ -1.38
VPS13A-204ENST00000376634 RELNP78509 3460 aa6.43□□□□□ -1.38
VPS13A-204ENST00000376634 KRTAP13-3Q3SY46 172 aa6.35□□□□□ -1.39
VPS13A-204ENST00000376634 VPS13CQ709C8 3753 aa6.3□□□□□ -1.4
VPS13A-204ENST00000376634 OTOGQ6ZRI0 2925 aa6.28□□□□□ -1.4
VPS13A-204ENST00000376634 DCHS1Q96JQ0 3298 aa6.26□□□□□ -1.41
VPS13A-204ENST00000376634 CSMD1Q96PZ7 3565 aa6.25□□□□□ -1.41
VPS13A-204ENST00000376634 KRTAP12-2P59991 146 aa6.24□□□□□ -1.41
VPS13A-204ENST00000376634 TRRAPQ9Y4A5 3859 aa6.23□□□□□ -1.41
VPS13A-204ENST00000376634 KRTAP13-4Q3LI77 160 aa6.22□□□□□ -1.41
VPS13A-204ENST00000376634 AKAP9Q99996 3911 aa6.09□□□□□ -1.43
VPS13A-204ENST00000376634 KRTAP15-1Q3LI76 137 aa6.09□□□□□ -1.43
VPS13A-204ENST00000376634 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
VPS13A-204ENST00000376634 CUBNO60494 3623 aa6.01□□□□□ -1.45
VPS13A-204ENST00000376634 INE1O15225 51 aa5.99□□□□□ -1.45
VPS13A-204ENST00000376634 SVEP1Q4LDE5 3571 aa5.97□□□□□ -1.45
VPS13A-204ENST00000376634 CSMD3Q7Z407 3707 aa5.93□□□□□ -1.46
VPS13A-204ENST00000376634 MUC3AQ02505 3323 aa5.87□□□□□ -1.47
VPS13A-204ENST00000376634 KRTAP10-12P60413 245 aa5.76□□□□□ -1.49
VPS13A-204ENST00000376634 LYSTQ99698 3801 aa5.74□□□□□ -1.49
VPS13A-204ENST00000376634 CSMD2Q7Z408 3487 aa5.73□□□□□ -1.49
VPS13A-204ENST00000376634 KRTAP3-1Q9BYR8 98 aa5.73□□□□□ -1.49
VPS13A-204ENST00000376634 CRCT1Q9UGL9 99 aa5.72□□□□□ -1.49
VPS13A-204ENST00000376634 KRTAP10-6P60371 365 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-204ENST00000376634 BSNQ9UPA5 3926 aa5.67□□□□□ -1.5
VPS13A-204ENST00000376634 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
VPS13A-204ENST00000376634 DNAH7Q8WXX0 4024 aa5.46□□□□□ -1.54
VPS13A-204ENST00000376634 ZNF469Q96JG9 3925 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-204ENST00000376634 ALMS1Q8TCU4 4167 aa5.45□□□□□ -1.54
VPS13A-204ENST00000376634 KRTAP23-1A1A580 65 aa5.44□□□□□ -1.54
VPS13A-204ENST00000376634 CMYA5Q8N3K9 4069 aa5.42□□□□□ -1.54
VPS13A-204ENST00000376634 KRTAP3-2Q9BYR7 98 aa5.4□□□□□ -1.54
VPS13A-204ENST00000376634 KRTAP3-3Q9BYR6 98 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms