RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.22□□□□□ -1.09
USP49-201ENST00000373006 RETNLBQ9BQ08 111 aa8.22□□□□□ -1.09
USP49-201ENST00000373006 A0A1B0GVX0 72 aa8.21□□□□□ -1.09
USP49-201ENST00000373006 APLNQ9ULZ1 77 aa8.21□□□□□ -1.09
USP49-201ENST00000373006 CDK2AP2O75956 126 aa8.21□□□□□ -1.1
USP49-201ENST00000373006 SPINK6Q6UWN8 80 aa8.2□□□□□ -1.1
USP49-201ENST00000373006 LINC01558Q9Y6Z2 57 aa8.2□□□□□ -1.1
USP49-201ENST00000373006 LINC01554Q52M75 96 aa8.19□□□□□ -1.1
USP49-201ENST00000373006 MRPL34Q9BQ48 92 aaKnown RBP8.19□□□□□ -1.1
USP49-201ENST00000373006 FLG2Q5D862 2391 aaPredicted RBP8.19□□□□□ -1.1
USP49-201ENST00000373006 PLECQ15149 4684 aaKnown RBP8.17□□□□□ -1.1
USP49-201ENST00000373006 PLAC8Q9NZF1 115 aa8.16□□□□□ -1.1
USP49-201ENST00000373006 WWC2-AS2Q96NR7 200 aa8.15□□□□□ -1.1
USP49-201ENST00000373006 NBDYA0A0U1RRE5 68 aa8.15□□□□□ -1.11
USP49-201ENST00000373006 Q5W150 140 aa8.14□□□□□ -1.11
USP49-201ENST00000373006 SPACA4Q8TDM5 124 aa8.14□□□□□ -1.11
USP49-201ENST00000373006 LINC00483Q53H64 154 aa8.13□□□□□ -1.11
USP49-201ENST00000373006 PSORS1C2Q9UIG4 136 aa8.12□□□□□ -1.11
USP49-201ENST00000373006 FRAS1Q86XX4 4008 aa8.11□□□□□ -1.11
USP49-201ENST00000373006 Q6ZRN7 208 aaPredicted RBP8.11□□□□□ -1.11
USP49-201ENST00000373006 ZNF706Q9Y5V0 76 aaPredicted RBP8.08□□□□□ -1.12
USP49-201ENST00000373006 CSAG1Q6PB30 78 aa8.07□□□□□ -1.12
USP49-201ENST00000373006 A0A1B0GU69 56 aa8.06□□□□□ -1.12
USP49-201ENST00000373006 IGLV5-52A0A0A0MRZ9 124 aa8.06□□□□□ -1.12
USP49-201ENST00000373006 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
USP49-201ENST00000373006 DNAH8Q96JB1 4490 aa8.05□□□□□ -1.12
USP49-201ENST00000373006 FBN3Q75N90 2809 aa8.05□□□□□ -1.12
USP49-201ENST00000373006 ZNF861PO60384 105 aa8.04□□□□□ -1.12
USP49-201ENST00000373006 MEGF8Q7Z7M0 2845 aa8.03□□□□□ -1.12
USP49-201ENST00000373006 A0A087WTM6 91 aa8.02□□□□□ -1.13
USP49-201ENST00000373006 KMT2AQ03164 3969 aa8.02□□□□□ -1.13
USP49-201ENST00000373006 KRTAP13-3Q3SY46 172 aa8.02□□□□□ -1.13
USP49-201ENST00000373006 STARD9Q9P2P6 4700 aa8.01□□□□□ -1.13
USP49-201ENST00000373006 RTL8CO15255 209 aa8.01□□□□□ -1.13
USP49-201ENST00000373006 SPINK1P00995 79 aa8□□□□□ -1.13
USP49-201ENST00000373006 ACYP2P14621 99 aa8□□□□□ -1.13
USP49-201ENST00000373006 DNHD1Q96M86 4753 aa8□□□□□ -1.13
USP49-201ENST00000373006 NUPR2A6NF83 97 aa7.99□□□□□ -1.13
USP49-201ENST00000373006 DMBT1Q9UGM3 2413 aaPredicted RBP7.99□□□□□ -1.13
USP49-201ENST00000373006 MIR22HGQ0VDD5 57 aa7.97□□□□□ -1.13
USP49-201ENST00000373006 HECTD4Q9Y4D8 3996 aa7.97□□□□□ -1.13
USP49-201ENST00000373006 DYNC2H1Q8NCM8 4307 aaKnown RBP7.95□□□□□ -1.14
USP49-201ENST00000373006 LY6G6CO95867 125 aa7.94□□□□□ -1.14
USP49-201ENST00000373006 PRKDCP78527 4128 aaKnown RBP7.94□□□□□ -1.14
USP49-201ENST00000373006 PLA2G1BP04054 148 aaKnown RBP7.92□□□□□ -1.14
USP49-201ENST00000373006 IGLV7-43P04211 117 aa7.92□□□□□ -1.14
USP49-201ENST00000373006 DMAC1Q96GE9 116 aa7.92□□□□□ -1.14
USP49-201ENST00000373006 DNAH17Q9UFH2 4485 aa7.92□□□□□ -1.14
USP49-201ENST00000373006 CRIPTQ9P021 101 aa7.92□□□□□ -1.14
USP49-201ENST00000373006 UQCR11O14957 56 aa7.89□□□□□ -1.15
USP49-201ENST00000373006 DNAH2Q9P225 4427 aa7.89□□□□□ -1.15
USP49-201ENST00000373006 IGKV2D-30A0A075B6S6 120 aa7.88□□□□□ -1.15
USP49-201ENST00000373006 IGKV2-30P06310 120 aa7.88□□□□□ -1.15
USP49-201ENST00000373006 ALMS1Q8TCU4 4167 aa7.88□□□□□ -1.15
USP49-201ENST00000373006 C1orf134Q5TEV5 83 aa7.87□□□□□ -1.15
USP49-201ENST00000373006 VPS13DQ5THJ4 4388 aa7.87□□□□□ -1.15
USP49-201ENST00000373006 FAM229AH3BQW9 127 aa7.86□□□□□ -1.15
USP49-201ENST00000373006 SSBP3-AS1Q7Z2R9 100 aa7.84□□□□□ -1.15
USP49-201ENST00000373006 DNAH6Q9C0G6 4158 aa7.83□□□□□ -1.16
USP49-201ENST00000373006 SPATA8Q6RVD6 105 aa7.8□□□□□ -1.16
USP49-201ENST00000373006 DNAH11Q96DT5 4516 aa7.8□□□□□ -1.16
USP49-201ENST00000373006 KRTAP13-2Q52LG2 175 aa7.78□□□□□ -1.16
USP49-201ENST00000373006 KRTAP10-2P60368 255 aa7.77□□□□□ -1.17
USP49-201ENST00000373006 KRTAP16-1A8MUX0 517 aa7.75□□□□□ -1.17
USP49-201ENST00000373006 Q8N1X5 172 aa7.74□□□□□ -1.17
USP49-201ENST00000373006 LRP1BQ9NZR2 4599 aa7.7□□□□□ -1.18
USP49-201ENST00000373006 DNAH5Q8TE73 4624 aa7.66□□□□□ -1.18
USP49-201ENST00000373006 ROMO1P60602 79 aa7.65□□□□□ -1.19
USP49-201ENST00000373006 KRTAP10-1P60331 282 aa7.64□□□□□ -1.19
USP49-201ENST00000373006 KRTAP1-4P0C5Y4 121 aa7.61□□□□□ -1.19
USP49-201ENST00000373006 A0A0A0MQY5 61 aa7.61□□□□□ -1.19
USP49-201ENST00000373006 HYDINQ4G0P3 5121 aa7.59□□□□□ -1.19
USP49-201ENST00000373006 VPS13BQ7Z7G8 4022 aa7.58□□□□□ -1.2
USP49-201ENST00000373006 TYMSOSQ8TAI1 123 aa7.57□□□□□ -1.2
USP49-201ENST00000373006 KRTAP25-1Q3LHN0 102 aa7.56□□□□□ -1.2
USP49-201ENST00000373006 LINC00304Q8N9R0 145 aa7.54□□□□□ -1.2
USP49-201ENST00000373006 A8MUU9 505 aa7.53□□□□□ -1.2
USP49-201ENST00000373006 H0YAA0 97 aa7.52□□□□□ -1.21
USP49-201ENST00000373006 Q6ZSA8 131 aa7.52□□□□□ -1.21
USP49-201ENST00000373006 FAT2Q9NYQ8 4349 aa7.51□□□□□ -1.21
USP49-201ENST00000373006 P0C880 135 aa7.5□□□□□ -1.21
USP49-201ENST00000373006 SPINT4Q6UDR6 99 aa7.5□□□□□ -1.21
USP49-201ENST00000373006 SMR3BP02814 79 aaPredicted RBP7.49□□□□□ -1.21
USP49-201ENST00000373006 PKD1P98161 4303 aa7.47□□□□□ -1.21
USP49-201ENST00000373006 C9orf92A6NGG3 77 aa7.47□□□□□ -1.21
USP49-201ENST00000373006 PKHD1P08F94 4074 aa7.46□□□□□ -1.22
USP49-201ENST00000373006 A0A1B0GU33 70 aa7.45□□□□□ -1.22
USP49-201ENST00000373006 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
USP49-201ENST00000373006 A0A0D9SG42 100 aa7.41□□□□□ -1.22
USP49-201ENST00000373006 FAT1Q14517 4588 aa7.39□□□□□ -1.23
USP49-201ENST00000373006 K7ERS5 55 aa7.38□□□□□ -1.23
USP49-201ENST00000373006 NDUFAF8A1L188 74 aa7.36□□□□□ -1.23
USP49-201ENST00000373006 H1FX-AS1Q4G0G2 97 aa7.35□□□□□ -1.23
USP49-201ENST00000373006 C10orf95Q9H7T3 257 aa7.34□□□□□ -1.23
USP49-201ENST00000373006 C20orf166-AS1Q96NR2 134 aa7.3□□□□□ -1.24
USP49-201ENST00000373006 RPS29P62273 56 aaKnown RBP7.26□□□□□ -1.25
USP49-201ENST00000373006 COX6B2Q6YFQ2 88 aa7.25□□□□□ -1.25
USP49-201ENST00000373006 DYNC1H1Q14204 4646 aaKnown RBP7.25□□□□□ -1.25
USP49-201ENST00000373006 KRTAP21-3Q3LHN1 58 aa7.24□□□□□ -1.25
USP49-201ENST00000373006 SACSQ9NZJ4 4579 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms