RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 APLNQ9ULZ1 77 aa7.14□□□□□ -1.27
PTPN1-201ENST00000371621 KRTAP1-1Q07627 177 aa7.13□□□□□ -1.27
PTPN1-201ENST00000371621 Q5W150 140 aa7.13□□□□□ -1.27
PTPN1-201ENST00000371621 FBN1P35555 2871 aaKnown RBP7.13□□□□□ -1.27
PTPN1-201ENST00000371621 SPATA8Q6RVD6 105 aa7.12□□□□□ -1.27
PTPN1-201ENST00000371621 TRRAPQ9Y4A5 3859 aa7.12□□□□□ -1.27
PTPN1-201ENST00000371621 IGLV5-52A0A0A0MRZ9 124 aa7.12□□□□□ -1.27
PTPN1-201ENST00000371621 SRRM2Q9UQ35 2752 aaKnown RBP7.12□□□□□ -1.27
PTPN1-201ENST00000371621 A0A1B0GU33 70 aa7.1□□□□□ -1.27
PTPN1-201ENST00000371621 PKD1L1Q8TDX9 2849 aa7.09□□□□□ -1.27
PTPN1-201ENST00000371621 KRTAP10-11P60412 298 aa7.09□□□□□ -1.28
PTPN1-201ENST00000371621 ROMO1P60602 79 aa7.07□□□□□ -1.28
PTPN1-201ENST00000371621 PSORS1C2Q9UIG4 136 aa7.07□□□□□ -1.28
PTPN1-201ENST00000371621 KRTAP7-1Q8IUC3 87 aa7.06□□□□□ -1.28
PTPN1-201ENST00000371621 ZNF861PO60384 105 aa7.04□□□□□ -1.28
PTPN1-201ENST00000371621 LY6G6CO95867 125 aa7.04□□□□□ -1.28
PTPN1-201ENST00000371621 DMAC1Q96GE9 116 aa7.04□□□□□ -1.28
PTPN1-201ENST00000371621 IGLV7-43P04211 117 aa7.03□□□□□ -1.28
PTPN1-201ENST00000371621 NDUFAF8A1L188 74 aa7.03□□□□□ -1.28
PTPN1-201ENST00000371621 TENM3Q9P273 2699 aa7.03□□□□□ -1.28
PTPN1-201ENST00000371621 KMT2BQ9UMN6 2715 aaPredicted RBP7.03□□□□□ -1.28
PTPN1-201ENST00000371621 KRTAP25-1Q3LHN0 102 aa7.02□□□□□ -1.29
PTPN1-201ENST00000371621 ASB16-AS1Q495Z4 193 aa7.02□□□□□ -1.29
PTPN1-201ENST00000371621 NBDYA0A0U1RRE5 68 aa7.01□□□□□ -1.29
PTPN1-201ENST00000371621 KRTAP11-1Q8IUC1 163 aa7.01□□□□□ -1.29
PTPN1-201ENST00000371621 TGP01266 2768 aa6.99□□□□□ -1.29
PTPN1-201ENST00000371621 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.98□□□□□ -1.29
PTPN1-201ENST00000371621 SPRR1BP22528 89 aa6.98□□□□□ -1.29
PTPN1-201ENST00000371621 C9orf92A6NGG3 77 aa6.97□□□□□ -1.29
PTPN1-201ENST00000371621 KRTAP16-1A8MUX0 517 aa6.94□□□□□ -1.3
PTPN1-201ENST00000371621 ANK3Q12955 4377 aaKnown RBP6.94□□□□□ -1.3
PTPN1-201ENST00000371621 NUPR2A6NF83 97 aa6.93□□□□□ -1.3
PTPN1-201ENST00000371621 A8MUU9 505 aa6.93□□□□□ -1.3
PTPN1-201ENST00000371621 KRTAP1-5Q9BYS1 174 aa6.92□□□□□ -1.3
PTPN1-201ENST00000371621 PANO1I0J062 215 aa6.92□□□□□ -1.3
PTPN1-201ENST00000371621 TYMSOSQ8TAI1 123 aa6.92□□□□□ -1.3
PTPN1-201ENST00000371621 KRTAP24-1Q3LI83 254 aa6.91□□□□□ -1.3
PTPN1-201ENST00000371621 WWC2-AS2Q96NR7 200 aa6.91□□□□□ -1.3
PTPN1-201ENST00000371621 PLAC8Q9NZF1 115 aa6.9□□□□□ -1.3
PTPN1-201ENST00000371621 A0A0A0MQY5 61 aa6.9□□□□□ -1.31
PTPN1-201ENST00000371621 TENM2Q9NT68 2774 aa6.87□□□□□ -1.31
PTPN1-201ENST00000371621 A0A087WTM6 91 aa6.85□□□□□ -1.31
PTPN1-201ENST00000371621 COL7A1Q02388 2944 aa6.85□□□□□ -1.31
PTPN1-201ENST00000371621 LINC00304Q8N9R0 145 aa6.85□□□□□ -1.31
PTPN1-201ENST00000371621 H1FX-AS1Q4G0G2 97 aa6.8□□□□□ -1.32
PTPN1-201ENST00000371621 LUZP6Q538Z0 58 aa6.79□□□□□ -1.32
PTPN1-201ENST00000371621 RPL37P61927 97 aaKnown RBP6.77□□□□□ -1.33
PTPN1-201ENST00000371621 LINC00483Q53H64 154 aa6.77□□□□□ -1.33
PTPN1-201ENST00000371621 CSMD3Q7Z407 3707 aa6.75□□□□□ -1.33
PTPN1-201ENST00000371621 Q6ZSA8 131 aa6.74□□□□□ -1.33
PTPN1-201ENST00000371621 C10orf95Q9H7T3 257 aa6.74□□□□□ -1.33
PTPN1-201ENST00000371621 C20orf166-AS1Q96NR2 134 aa6.73□□□□□ -1.33
PTPN1-201ENST00000371621 H0YAA0 97 aa6.7□□□□□ -1.34
PTPN1-201ENST00000371621 SMR3BP02814 79 aaPredicted RBP6.65□□□□□ -1.34
PTPN1-201ENST00000371621 ANK2Q01484 3957 aa6.65□□□□□ -1.35
PTPN1-201ENST00000371621 COX6B2Q6YFQ2 88 aa6.62□□□□□ -1.35
PTPN1-201ENST00000371621 KRTAP13-1Q8IUC0 172 aa6.61□□□□□ -1.35
PTPN1-201ENST00000371621 FBN3Q75N90 2809 aa6.61□□□□□ -1.35
PTPN1-201ENST00000371621 P0C880 135 aa6.58□□□□□ -1.36
PTPN1-201ENST00000371621 MEGF8Q7Z7M0 2845 aa6.49□□□□□ -1.37
PTPN1-201ENST00000371621 KRTAP13-3Q3SY46 172 aa6.47□□□□□ -1.37
PTPN1-201ENST00000371621 LYSTQ99698 3801 aa6.46□□□□□ -1.38
PTPN1-201ENST00000371621 KRTAP13-2Q52LG2 175 aa6.46□□□□□ -1.38
PTPN1-201ENST00000371621 S4R3F8 94 aa6.43□□□□□ -1.38
PTPN1-201ENST00000371621 KRTAP10-2P60368 255 aa6.42□□□□□ -1.38
PTPN1-201ENST00000371621 Q6ZRN7 208 aaPredicted RBP6.41□□□□□ -1.38
PTPN1-201ENST00000371621 CAMK2N1Q7Z7J9 78 aa6.38□□□□□ -1.39
PTPN1-201ENST00000371621 DNAH10Q8IVF4 4471 aa6.37□□□□□ -1.39
PTPN1-201ENST00000371621 TPRXLQ17RH7 258 aa6.37□□□□□ -1.39
PTPN1-201ENST00000371621 KRTAP10-1P60331 282 aa6.36□□□□□ -1.39
PTPN1-201ENST00000371621 R4GN34 69 aa6.35□□□□□ -1.39
PTPN1-201ENST00000371621 DNAH1Q9P2D7 4330 aa6.34□□□□□ -1.39
PTPN1-201ENST00000371621 CMYA5Q8N3K9 4069 aa6.34□□□□□ -1.39
PTPN1-201ENST00000371621 M0QZ58 72 aa6.32□□□□□ -1.4
PTPN1-201ENST00000371621 DNAH3Q8TD57 4116 aa6.3□□□□□ -1.4
PTPN1-201ENST00000371621 HUWE1Q7Z6Z7 4374 aaKnown RBP6.29□□□□□ -1.4
PTPN1-201ENST00000371621 PLAC4Q8WY50 150 aa6.27□□□□□ -1.41
PTPN1-201ENST00000371621 KRTAP10-8P60410 259 aa6.22□□□□□ -1.41
PTPN1-201ENST00000371621 DNAH7Q8WXX0 4024 aa6.21□□□□□ -1.42
PTPN1-201ENST00000371621 DNAH9Q9NYC9 4486 aa6.21□□□□□ -1.42
PTPN1-201ENST00000371621 PLECQ15149 4684 aaKnown RBP6.18□□□□□ -1.42
PTPN1-201ENST00000371621 DNHD1Q96M86 4753 aa6.17□□□□□ -1.42
PTPN1-201ENST00000371621 PRKDCP78527 4128 aaKnown RBP6.13□□□□□ -1.43
PTPN1-201ENST00000371621 KRTAP12-2P59991 146 aa6.13□□□□□ -1.43
PTPN1-201ENST00000371621 KRTAP15-1Q3LI76 137 aa6.12□□□□□ -1.43
PTPN1-201ENST00000371621 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
PTPN1-201ENST00000371621 KRTAP1-4P0C5Y4 121 aa6.11□□□□□ -1.43
PTPN1-201ENST00000371621 KRTAP13-4Q3LI77 160 aa6.1□□□□□ -1.43
PTPN1-201ENST00000371621 STARD9Q9P2P6 4700 aa6.09□□□□□ -1.43
PTPN1-201ENST00000371621 KMT2AQ03164 3969 aa6.08□□□□□ -1.44
PTPN1-201ENST00000371621 SEC61BP60468 96 aaKnown RBP6.07□□□□□ -1.44
PTPN1-201ENST00000371621 DYNC2H1Q8NCM8 4307 aaKnown RBP6.06□□□□□ -1.44
PTPN1-201ENST00000371621 FRAS1Q86XX4 4008 aa6.01□□□□□ -1.45
PTPN1-201ENST00000371621 RPS29P62273 56 aaKnown RBP5.99□□□□□ -1.45
PTPN1-201ENST00000371621 KRTAP12-1P59990 96 aa5.96□□□□□ -1.46
PTPN1-201ENST00000371621 KRTAP10-6P60371 365 aaPredicted RBP5.96□□□□□ -1.46
PTPN1-201ENST00000371621 DNAH11Q96DT5 4516 aa5.92□□□□□ -1.46
PTPN1-201ENST00000371621 VPS13DQ5THJ4 4388 aa5.91□□□□□ -1.46
PTPN1-201ENST00000371621 DNAH2Q9P225 4427 aa5.9□□□□□ -1.46
PTPN1-201ENST00000371621 DNAH6Q9C0G6 4158 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms