RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 HRES1P13985 223 aa7.51□□□□□ -1.21
SNRNP48-201ENST00000342415 Q8N1X5 172 aa7.51□□□□□ -1.21
SNRNP48-201ENST00000342415 WWC2-AS2Q96NR7 200 aa7.51□□□□□ -1.21
SNRNP48-201ENST00000342415 A0A087X002 238 aa7.51□□□□□ -1.21
SNRNP48-201ENST00000342415 NOTCH2NLQ7Z3S9 236 aa7.51□□□□□ -1.21
SNRNP48-201ENST00000342415 SSBP3-AS1Q7Z2R9 100 aa7.5□□□□□ -1.21
SNRNP48-201ENST00000342415 SPRR1BP22528 89 aa7.5□□□□□ -1.21
SNRNP48-201ENST00000342415 SPINK7P58062 85 aa7.5□□□□□ -1.21
SNRNP48-201ENST00000342415 C8orf87E5RJ46 101 aa7.5□□□□□ -1.21
SNRNP48-201ENST00000342415 CDC42SE1Q9NRR8 79 aa7.5□□□□□ -1.21
SNRNP48-201ENST00000342415 C9orf92A6NGG3 77 aa7.49□□□□□ -1.21
SNRNP48-201ENST00000342415 UQCR11O14957 56 aa7.48□□□□□ -1.21
SNRNP48-201ENST00000342415 ZNF469Q96JG9 3925 aaPredicted RBP7.47□□□□□ -1.21
SNRNP48-201ENST00000342415 MIR22HGQ0VDD5 57 aa7.47□□□□□ -1.21
SNRNP48-201ENST00000342415 Q75L30 129 aa7.45□□□□□ -1.22
SNRNP48-201ENST00000342415 PRAC1Q96KF2 57 aa7.44□□□□□ -1.22
SNRNP48-201ENST00000342415 RBM12B-AS1Q9P1G2 102 aa7.42□□□□□ -1.22
SNRNP48-201ENST00000342415 LINC01558Q9Y6Z2 57 aa7.41□□□□□ -1.22
SNRNP48-201ENST00000342415 LCA10Q71F78 164 aa7.41□□□□□ -1.22
SNRNP48-201ENST00000342415 LCE6AA0A183 80 aa7.4□□□□□ -1.22
SNRNP48-201ENST00000342415 Q5W150 140 aa7.39□□□□□ -1.23
SNRNP48-201ENST00000342415 PLAC8Q9NZF1 115 aa7.37□□□□□ -1.23
SNRNP48-201ENST00000342415 COL7A1Q02388 2944 aa7.36□□□□□ -1.23
SNRNP48-201ENST00000342415 LINC00304Q8N9R0 145 aa7.35□□□□□ -1.23
SNRNP48-201ENST00000342415 KRTAP10-2P60368 255 aa7.32□□□□□ -1.24
SNRNP48-201ENST00000342415 CSMD3Q7Z407 3707 aa7.31□□□□□ -1.24
SNRNP48-201ENST00000342415 Q6ZR54 194 aa7.3□□□□□ -1.24
SNRNP48-201ENST00000342415 FBN3Q75N90 2809 aa7.29□□□□□ -1.24
SNRNP48-201ENST00000342415 Q6ZRN7 208 aaPredicted RBP7.27□□□□□ -1.24
SNRNP48-201ENST00000342415 LINC00483Q53H64 154 aa7.27□□□□□ -1.25
SNRNP48-201ENST00000342415 KRTAP13-1Q8IUC0 172 aa7.24□□□□□ -1.25
SNRNP48-201ENST00000342415 A0A0D9SG42 100 aa7.23□□□□□ -1.25
SNRNP48-201ENST00000342415 KRTAP10-1P60331 282 aa7.23□□□□□ -1.25
SNRNP48-201ENST00000342415 ANK3Q12955 4377 aaKnown RBP7.21□□□□□ -1.25
SNRNP48-201ENST00000342415 CRIPTQ9P021 101 aa7.21□□□□□ -1.25
SNRNP48-201ENST00000342415 ADM2Q7Z4H4 148 aa7.19□□□□□ -1.26
SNRNP48-201ENST00000342415 DMAC1Q96GE9 116 aa7.19□□□□□ -1.26
SNRNP48-201ENST00000342415 CSAG1Q6PB30 78 aa7.17□□□□□ -1.26
SNRNP48-201ENST00000342415 A0A1B0GU33 70 aa7.14□□□□□ -1.27
SNRNP48-201ENST00000342415 AKAP9Q99996 3911 aa7.14□□□□□ -1.27
SNRNP48-201ENST00000342415 A6NN06 94 aa7.14□□□□□ -1.27
SNRNP48-201ENST00000342415 LINC01554Q52M75 96 aa7.14□□□□□ -1.27
SNRNP48-201ENST00000342415 SPINT4Q6UDR6 99 aa7.12□□□□□ -1.27
SNRNP48-201ENST00000342415 KRTAP13-2Q52LG2 175 aa7.11□□□□□ -1.27
SNRNP48-201ENST00000342415 MEGF8Q7Z7M0 2845 aa7.07□□□□□ -1.28
SNRNP48-201ENST00000342415 SPATA8Q6RVD6 105 aa7.05□□□□□ -1.28
SNRNP48-201ENST00000342415 ASB16-AS1Q495Z4 193 aa6.98□□□□□ -1.29
SNRNP48-201ENST00000342415 J3QL48 77 aa6.95□□□□□ -1.3
SNRNP48-201ENST00000342415 H3BS24 57 aa6.94□□□□□ -1.3
SNRNP48-201ENST00000342415 H1FX-AS1Q4G0G2 97 aa6.88□□□□□ -1.31
SNRNP48-201ENST00000342415 COX6B2Q6YFQ2 88 aa6.87□□□□□ -1.31
SNRNP48-201ENST00000342415 Q5VSD8 79 aa6.84□□□□□ -1.31
SNRNP48-201ENST00000342415 KRTAP1-4P0C5Y4 121 aa6.84□□□□□ -1.31
SNRNP48-201ENST00000342415 Q6ZSA8 131 aa6.82□□□□□ -1.32
SNRNP48-201ENST00000342415 RPL37P61927 97 aaKnown RBP6.8□□□□□ -1.32
SNRNP48-201ENST00000342415 S4R3F8 94 aa6.8□□□□□ -1.32
SNRNP48-201ENST00000342415 KRTAP13-3Q3SY46 172 aa6.78□□□□□ -1.32
SNRNP48-201ENST00000342415 KRTAP16-1A8MUX0 517 aa6.77□□□□□ -1.33
SNRNP48-201ENST00000342415 ROMO1P60602 79 aa6.73□□□□□ -1.33
SNRNP48-201ENST00000342415 KRTAP25-1Q3LHN0 102 aa6.72□□□□□ -1.33
SNRNP48-201ENST00000342415 H0YAA0 97 aa6.7□□□□□ -1.34
SNRNP48-201ENST00000342415 DNAH10Q8IVF4 4471 aa6.67□□□□□ -1.34
SNRNP48-201ENST00000342415 HUWE1Q7Z6Z7 4374 aaKnown RBP6.66□□□□□ -1.34
SNRNP48-201ENST00000342415 A8MUU9 505 aa6.65□□□□□ -1.34
SNRNP48-201ENST00000342415 C20orf166-AS1Q96NR2 134 aa6.63□□□□□ -1.35
SNRNP48-201ENST00000342415 R4GN34 69 aa6.63□□□□□ -1.35
SNRNP48-201ENST00000342415 RPS29P62273 56 aaKnown RBP6.61□□□□□ -1.35
SNRNP48-201ENST00000342415 M0QZ58 72 aa6.59□□□□□ -1.35
SNRNP48-201ENST00000342415 C10orf95Q9H7T3 257 aa6.59□□□□□ -1.35
SNRNP48-201ENST00000342415 CAMK2N1Q7Z7J9 78 aa6.59□□□□□ -1.35
SNRNP48-201ENST00000342415 ANK2Q01484 3957 aa6.51□□□□□ -1.37
SNRNP48-201ENST00000342415 M0R2T5 61 aa6.49□□□□□ -1.37
SNRNP48-201ENST00000342415 NDUFAF8A1L188 74 aa6.48□□□□□ -1.37
SNRNP48-201ENST00000342415 PLECQ15149 4684 aaKnown RBP6.48□□□□□ -1.37
SNRNP48-201ENST00000342415 P0C880 135 aa6.47□□□□□ -1.37
SNRNP48-201ENST00000342415 KRTAP3-1Q9BYR8 98 aa6.47□□□□□ -1.37
SNRNP48-201ENST00000342415 SEC61BP60468 96 aaKnown RBP6.45□□□□□ -1.38
SNRNP48-201ENST00000342415 XP32Q5T750 250 aa6.44□□□□□ -1.38
SNRNP48-201ENST00000342415 LUZP6Q538Z0 58 aa6.43□□□□□ -1.38
SNRNP48-201ENST00000342415 LYSTQ99698 3801 aa6.41□□□□□ -1.38
SNRNP48-201ENST00000342415 DNAH9Q9NYC9 4486 aa6.39□□□□□ -1.39
SNRNP48-201ENST00000342415 DNAH11Q96DT5 4516 aa6.39□□□□□ -1.39
SNRNP48-201ENST00000342415 KRTAP21-3Q3LHN1 58 aa6.34□□□□□ -1.4
SNRNP48-201ENST00000342415 DNAH1Q9P2D7 4330 aa6.33□□□□□ -1.4
SNRNP48-201ENST00000342415 KRTAP10-8P60410 259 aa6.31□□□□□ -1.4
SNRNP48-201ENST00000342415 STARD9Q9P2P6 4700 aa6.29□□□□□ -1.4
SNRNP48-201ENST00000342415 DNAH8Q96JB1 4490 aa6.27□□□□□ -1.41
SNRNP48-201ENST00000342415 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
SNRNP48-201ENST00000342415 DNHD1Q96M86 4753 aa6.26□□□□□ -1.41
SNRNP48-201ENST00000342415 A0A1B0GVY2 172 aa6.25□□□□□ -1.41
SNRNP48-201ENST00000342415 KRTAP12-2P59991 146 aa6.25□□□□□ -1.41
SNRNP48-201ENST00000342415 KMT2AQ03164 3969 aa6.24□□□□□ -1.41
SNRNP48-201ENST00000342415 TPRXLQ17RH7 258 aa6.22□□□□□ -1.41
SNRNP48-201ENST00000342415 LRP1BQ9NZR2 4599 aa6.2□□□□□ -1.42
SNRNP48-201ENST00000342415 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
SNRNP48-201ENST00000342415 FRAS1Q86XX4 4008 aa6.2□□□□□ -1.42
SNRNP48-201ENST00000342415 PRKDCP78527 4128 aaKnown RBP6.19□□□□□ -1.42
SNRNP48-201ENST00000342415 FAT1Q14517 4588 aa6.18□□□□□ -1.42
SNRNP48-201ENST00000342415 DNAH5Q8TE73 4624 aa6.18□□□□□ -1.42
SNRNP48-201ENST00000342415 DNAH7Q8WXX0 4024 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms