RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 PRAC1Q96KF2 57 aa12.1□□□□□ -0.47
RUNX3-202ENST00000338888 LINC00483Q53H64 154 aa12.09□□□□□ -0.47
RUNX3-202ENST00000338888 WWC2-AS2Q96NR7 200 aa12.08□□□□□ -0.48
RUNX3-202ENST00000338888 SPINK6Q6UWN8 80 aa12.07□□□□□ -0.48
RUNX3-202ENST00000338888 PRKDCP78527 4128 aaKnown RBP12.06□□□□□ -0.48
RUNX3-202ENST00000338888 ACYP2P14621 99 aa12.06□□□□□ -0.48
RUNX3-202ENST00000338888 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.06□□□□□ -0.48
RUNX3-202ENST00000338888 MEGF8Q7Z7M0 2845 aa12.06□□□□□ -0.48
RUNX3-202ENST00000338888 ADM2Q7Z4H4 148 aa12.04□□□□□ -0.48
RUNX3-202ENST00000338888 APLNQ9ULZ1 77 aa12.04□□□□□ -0.48
RUNX3-202ENST00000338888 KRTAP13-3Q3SY46 172 aa12.03□□□□□ -0.48
RUNX3-202ENST00000338888 DNAH7Q8WXX0 4024 aa12.03□□□□□ -0.48
RUNX3-202ENST00000338888 C8orf87E5RJ46 101 aa12□□□□□ -0.49
RUNX3-202ENST00000338888 PLECQ15149 4684 aaKnown RBP11.99□□□□□ -0.49
RUNX3-202ENST00000338888 ZNF706Q9Y5V0 76 aaPredicted RBP11.99□□□□□ -0.49
RUNX3-202ENST00000338888 SPACA4Q8TDM5 124 aa11.98□□□□□ -0.49
RUNX3-202ENST00000338888 ALMS1Q8TCU4 4167 aa11.96□□□□□ -0.49
RUNX3-202ENST00000338888 A0A1B0GU69 56 aa11.95□□□□□ -0.5
RUNX3-202ENST00000338888 PSORS1C2Q9UIG4 136 aa11.95□□□□□ -0.5
RUNX3-202ENST00000338888 DYNC2H1Q8NCM8 4307 aaKnown RBP11.93□□□□□ -0.5
RUNX3-202ENST00000338888 DMAC1Q96GE9 116 aa11.93□□□□□ -0.5
RUNX3-202ENST00000338888 NUPR2A6NF83 97 aa11.92□□□□□ -0.5
RUNX3-202ENST00000338888 PLA2G1BP04054 148 aaKnown RBP11.92□□□□□ -0.5
RUNX3-202ENST00000338888 RETNLBQ9BQ08 111 aa11.91□□□□□ -0.5
RUNX3-202ENST00000338888 STARD9Q9P2P6 4700 aa11.91□□□□□ -0.5
RUNX3-202ENST00000338888 NBDYA0A0U1RRE5 68 aa11.9□□□□□ -0.5
RUNX3-202ENST00000338888 Q6ZRN7 208 aaPredicted RBP11.89□□□□□ -0.51
RUNX3-202ENST00000338888 FRAS1Q86XX4 4008 aa11.89□□□□□ -0.51
RUNX3-202ENST00000338888 IGLV5-52A0A0A0MRZ9 124 aa11.89□□□□□ -0.51
RUNX3-202ENST00000338888 ZNF861PO60384 105 aa11.87□□□□□ -0.51
RUNX3-202ENST00000338888 DNAH8Q96JB1 4490 aa11.87□□□□□ -0.51
RUNX3-202ENST00000338888 SPATA8Q6RVD6 105 aa11.87□□□□□ -0.51
RUNX3-202ENST00000338888 CIRBP-AS1Q8TBR5 109 aa11.87□□□□□ -0.51
RUNX3-202ENST00000338888 RTL8CO15255 209 aa11.83□□□□□ -0.52
RUNX3-202ENST00000338888 LINC01554Q52M75 96 aa11.82□□□□□ -0.52
RUNX3-202ENST00000338888 MIR22HGQ0VDD5 57 aa11.82□□□□□ -0.52
RUNX3-202ENST00000338888 TGP01266 2768 aa11.81□□□□□ -0.52
RUNX3-202ENST00000338888 FBN3Q75N90 2809 aa11.8□□□□□ -0.52
RUNX3-202ENST00000338888 UQCR11O14957 56 aa11.78□□□□□ -0.52
RUNX3-202ENST00000338888 FAM229AH3BQW9 127 aa11.76□□□□□ -0.53
RUNX3-202ENST00000338888 IGKV2-30P06310 120 aa11.75□□□□□ -0.53
RUNX3-202ENST00000338888 A0A087WTM6 91 aa11.73□□□□□ -0.53
RUNX3-202ENST00000338888 C4orf48Q5BLP8 95 aa11.73□□□□□ -0.53
RUNX3-202ENST00000338888 VPS13DQ5THJ4 4388 aa11.72□□□□□ -0.53
RUNX3-202ENST00000338888 KMT2AQ03164 3969 aa11.71□□□□□ -0.54
RUNX3-202ENST00000338888 IGLV7-43P04211 117 aa11.66□□□□□ -0.54
RUNX3-202ENST00000338888 HECTD4Q9Y4D8 3996 aa11.66□□□□□ -0.54
RUNX3-202ENST00000338888 CSAG1Q6PB30 78 aa11.65□□□□□ -0.54
RUNX3-202ENST00000338888 IGKV2D-30A0A075B6S6 120 aa11.64□□□□□ -0.55
RUNX3-202ENST00000338888 LY6G6CO95867 125 aa11.63□□□□□ -0.55
RUNX3-202ENST00000338888 SSBP3-AS1Q7Z2R9 100 aa11.63□□□□□ -0.55
RUNX3-202ENST00000338888 DNAH17Q9UFH2 4485 aa11.61□□□□□ -0.55
RUNX3-202ENST00000338888 DNAH2Q9P225 4427 aa11.61□□□□□ -0.55
RUNX3-202ENST00000338888 KRTAP21-3Q3LHN1 58 aa11.58□□□□□ -0.55
RUNX3-202ENST00000338888 KRTAP16-1A8MUX0 517 aa11.56□□□□□ -0.56
RUNX3-202ENST00000338888 SPINK1P00995 79 aa11.53□□□□□ -0.56
RUNX3-202ENST00000338888 C1orf134Q5TEV5 83 aa11.51□□□□□ -0.57
RUNX3-202ENST00000338888 H3BS24 57 aa11.49□□□□□ -0.57
RUNX3-202ENST00000338888 KRTAP13-2Q52LG2 175 aa11.47□□□□□ -0.57
RUNX3-202ENST00000338888 Q8N1X5 172 aa11.42□□□□□ -0.58
RUNX3-202ENST00000338888 HYDINQ4G0P3 5121 aa11.37□□□□□ -0.59
RUNX3-202ENST00000338888 DNAH11Q96DT5 4516 aa11.33□□□□□ -0.6
RUNX3-202ENST00000338888 DNAH6Q9C0G6 4158 aa11.32□□□□□ -0.6
RUNX3-202ENST00000338888 Q6ZSA8 131 aa11.32□□□□□ -0.6
RUNX3-202ENST00000338888 KRTAP10-2P60368 255 aa11.31□□□□□ -0.6
RUNX3-202ENST00000338888 H0YAA0 97 aa11.3□□□□□ -0.6
RUNX3-202ENST00000338888 A8MUU9 505 aa11.28□□□□□ -0.6
RUNX3-202ENST00000338888 DNAH5Q8TE73 4624 aa11.25□□□□□ -0.61
RUNX3-202ENST00000338888 TYMSOSQ8TAI1 123 aa11.24□□□□□ -0.61
RUNX3-202ENST00000338888 LINC00304Q8N9R0 145 aa11.23□□□□□ -0.61
RUNX3-202ENST00000338888 KRTAP25-1Q3LHN0 102 aa11.22□□□□□ -0.61
RUNX3-202ENST00000338888 KRTAP1-4P0C5Y4 121 aa11.2□□□□□ -0.62
RUNX3-202ENST00000338888 FAT2Q9NYQ8 4349 aa11.19□□□□□ -0.62
RUNX3-202ENST00000338888 LRP1BQ9NZR2 4599 aa11.17□□□□□ -0.62
RUNX3-202ENST00000338888 A0A1B0GU33 70 aa11.16□□□□□ -0.62
RUNX3-202ENST00000338888 PKD1P98161 4303 aa11.15□□□□□ -0.62
RUNX3-202ENST00000338888 KRTAP10-1P60331 282 aa11.15□□□□□ -0.62
RUNX3-202ENST00000338888 SACSQ9NZJ4 4579 aa11.12□□□□□ -0.63
RUNX3-202ENST00000338888 FLG2Q5D862 2391 aaPredicted RBP11.11□□□□□ -0.63
RUNX3-202ENST00000338888 ROMO1P60602 79 aa11.09□□□□□ -0.63
RUNX3-202ENST00000338888 H1FX-AS1Q4G0G2 97 aa11.07□□□□□ -0.64
RUNX3-202ENST00000338888 CRIPTQ9P021 101 aa11.07□□□□□ -0.64
RUNX3-202ENST00000338888 KRTAP3-1Q9BYR8 98 aa11.04□□□□□ -0.64
RUNX3-202ENST00000338888 PKHD1P08F94 4074 aa11.01□□□□□ -0.65
RUNX3-202ENST00000338888 VPS13BQ7Z7G8 4022 aa10.99□□□□□ -0.65
RUNX3-202ENST00000338888 C9orf92A6NGG3 77 aa10.95□□□□□ -0.66
RUNX3-202ENST00000338888 K7ERS5 55 aa10.9□□□□□ -0.66
RUNX3-202ENST00000338888 KMT2CQ8NEZ4 4911 aaKnown RBP10.9□□□□□ -0.66
RUNX3-202ENST00000338888 COX6B2Q6YFQ2 88 aa10.88□□□□□ -0.67
RUNX3-202ENST00000338888 C20orf166-AS1Q96NR2 134 aa10.84□□□□□ -0.67
RUNX3-202ENST00000338888 RYR2Q92736 4967 aa10.83□□□□□ -0.67
RUNX3-202ENST00000338888 DYNC1H1Q14204 4646 aaKnown RBP10.83□□□□□ -0.68
RUNX3-202ENST00000338888 SMR3BP02814 79 aaPredicted RBP10.83□□□□□ -0.68
RUNX3-202ENST00000338888 P0C880 135 aa10.81□□□□□ -0.68
RUNX3-202ENST00000338888 A0A1B0GVY2 172 aa10.78□□□□□ -0.68
RUNX3-202ENST00000338888 RPS29P62273 56 aaKnown RBP10.78□□□□□ -0.68
RUNX3-202ENST00000338888 FAT1Q14517 4588 aa10.7□□□□□ -0.7
RUNX3-202ENST00000338888 APOBP04114 4563 aaKnown RBP10.67□□□□□ -0.7
RUNX3-202ENST00000338888 RPL37P61927 97 aaKnown RBP10.66□□□□□ -0.7
RUNX3-202ENST00000338888 A0A0D9SG42 100 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms