RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 Q6ZQT0 140 aa7.48□□□□□ -1.21
LIMS1-201ENST00000332345 FAT4Q6V0I7 4981 aa7.48□□□□□ -1.21
LIMS1-201ENST00000332345 H3BT86 120 aa7.47□□□□□ -1.21
LIMS1-201ENST00000332345 LINC00313P59037 77 aa7.47□□□□□ -1.21
LIMS1-201ENST00000332345 C14orf132Q9NPU4 83 aa7.46□□□□□ -1.22
LIMS1-201ENST00000332345 J3KT08 172 aa7.44□□□□□ -1.22
LIMS1-201ENST00000332345 DSCR10P59022 87 aa7.44□□□□□ -1.22
LIMS1-201ENST00000332345 SPCS1Q9Y6A9 102 aa7.44□□□□□ -1.22
LIMS1-201ENST00000332345 C20orf166-AS1Q96NR2 134 aa7.43□□□□□ -1.22
LIMS1-201ENST00000332345 A8MUU9 505 aa7.42□□□□□ -1.22
LIMS1-201ENST00000332345 IGHV6-1A0A0B4J1U7 121 aa7.41□□□□□ -1.22
LIMS1-201ENST00000332345 MTURNQ8N3F0 131 aa7.41□□□□□ -1.22
LIMS1-201ENST00000332345 A0A1B0GVX0 72 aa7.39□□□□□ -1.23
LIMS1-201ENST00000332345 PCP4L1A6NKN8 68 aa7.39□□□□□ -1.23
LIMS1-201ENST00000332345 C8orf87E5RJ46 101 aa7.39□□□□□ -1.23
LIMS1-201ENST00000332345 NDUFB1O75438 58 aa7.39□□□□□ -1.23
LIMS1-201ENST00000332345 NREPQ16612 68 aa7.38□□□□□ -1.23
LIMS1-201ENST00000332345 NOTCH2NLQ7Z3S9 236 aa7.37□□□□□ -1.23
LIMS1-201ENST00000332345 KRTAP16-1A8MUX0 517 aa7.35□□□□□ -1.23
LIMS1-201ENST00000332345 K7EP34 96 aa7.33□□□□□ -1.24
LIMS1-201ENST00000332345 A8MWP4 228 aa7.32□□□□□ -1.24
LIMS1-201ENST00000332345 GTF2H5Q6ZYL4 71 aa7.32□□□□□ -1.24
LIMS1-201ENST00000332345 KRTAP19-2Q3LHN2 52 aa7.31□□□□□ -1.24
LIMS1-201ENST00000332345 PRO0461Q9UI25 63 aa7.3□□□□□ -1.24
LIMS1-201ENST00000332345 IGKV3D-7A0A0C4DH55 119 aa7.28□□□□□ -1.24
LIMS1-201ENST00000332345 COX6B2Q6YFQ2 88 aa7.28□□□□□ -1.24
LIMS1-201ENST00000332345 PRR15Q8IV56 129 aa7.27□□□□□ -1.25
LIMS1-201ENST00000332345 C8orf17Q9NRJ1 99 aa7.27□□□□□ -1.25
LIMS1-201ENST00000332345 F8W1H4 67 aa7.25□□□□□ -1.25
LIMS1-201ENST00000332345 BPY2O14599 106 aa7.25□□□□□ -1.25
LIMS1-201ENST00000332345 Q8N9P0 234 aaPredicted RBP7.23□□□□□ -1.25
LIMS1-201ENST00000332345 MT1HP80294 61 aa7.22□□□□□ -1.25
LIMS1-201ENST00000332345 Q6ZVQ6 151 aa7.22□□□□□ -1.25
LIMS1-201ENST00000332345 ZCCHC13Q8WW36 166 aaKnown RBP7.2□□□□□ -1.26
LIMS1-201ENST00000332345 UBL5Q9BZL1 73 aa7.2□□□□□ -1.26
LIMS1-201ENST00000332345 K7EQZ3 153 aa7.19□□□□□ -1.26
LIMS1-201ENST00000332345 TMEM254Q8TBM7 123 aa7.18□□□□□ -1.26
LIMS1-201ENST00000332345 MMP24-AS1A0A0U1RRL7 71 aa7.17□□□□□ -1.26
LIMS1-201ENST00000332345 hDV103S1A0JD37 113 aa7.17□□□□□ -1.26
LIMS1-201ENST00000332345 M0R2T5 61 aa7.17□□□□□ -1.26
LIMS1-201ENST00000332345 ETDBQ3ZM63 59 aa7.17□□□□□ -1.26
LIMS1-201ENST00000332345 MRPL34Q9BQ48 92 aaKnown RBP7.17□□□□□ -1.26
LIMS1-201ENST00000332345 LINC00846Q9NV44 126 aa7.17□□□□□ -1.26
LIMS1-201ENST00000332345 FLGP20930 4061 aaPredicted RBP7.15□□□□□ -1.27
LIMS1-201ENST00000332345 RBM12B-AS1Q9P1G2 102 aa7.14□□□□□ -1.27
LIMS1-201ENST00000332345 NDUFS5O43920 106 aa7.12□□□□□ -1.27
LIMS1-201ENST00000332345 KRTAP4-8Q9BYQ9 185 aa7.12□□□□□ -1.27
LIMS1-201ENST00000332345 FAM236DA0A1B0GTK5 79 aa7.11□□□□□ -1.27
LIMS1-201ENST00000332345 FAM236CP0DP71 79 aa7.11□□□□□ -1.27
LIMS1-201ENST00000332345 SPINK7P58062 85 aa7.11□□□□□ -1.27
LIMS1-201ENST00000332345 Q8N9L7 120 aa7.11□□□□□ -1.27
LIMS1-201ENST00000332345 HRES1P13985 223 aa7.1□□□□□ -1.27
LIMS1-201ENST00000332345 CASC2Q6XLA1 102 aa7.09□□□□□ -1.27
LIMS1-201ENST00000332345 WFDC13Q8IUB5 93 aa7.08□□□□□ -1.28
LIMS1-201ENST00000332345 MPLKIPQ8TAP9 179 aa7.08□□□□□ -1.28
LIMS1-201ENST00000332345 KRTAP9-2Q9BYQ4 174 aa7.08□□□□□ -1.28
LIMS1-201ENST00000332345 KRTAP10-6P60371 365 aaPredicted RBP7.06□□□□□ -1.28
LIMS1-201ENST00000332345 CXCL6P80162 114 aa7.05□□□□□ -1.28
LIMS1-201ENST00000332345 ACYP1P07311 99 aa7.04□□□□□ -1.28
LIMS1-201ENST00000332345 HCG22E2RYF7 251 aa7.03□□□□□ -1.28
LIMS1-201ENST00000332345 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
LIMS1-201ENST00000332345 FAM240AA0A1B0GVK7 77 aa6.98□□□□□ -1.29
LIMS1-201ENST00000332345 Q5W150 140 aa6.98□□□□□ -1.29
LIMS1-201ENST00000332345 KRTAP4-12Q9BQ66 201 aa6.98□□□□□ -1.29
LIMS1-201ENST00000332345 A0A1B0GV90 55 aa6.97□□□□□ -1.29
LIMS1-201ENST00000332345 KRTAP19-4Q3LI73 84 aa6.97□□□□□ -1.29
LIMS1-201ENST00000332345 IGKV2D-30A0A075B6S6 120 aa6.96□□□□□ -1.3
LIMS1-201ENST00000332345 IGKV2-30P06310 120 aa6.96□□□□□ -1.3
LIMS1-201ENST00000332345 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.95□□□□□ -1.3
LIMS1-201ENST00000332345 KRTAP9-6A0A140TA67 174 aa6.94□□□□□ -1.3
LIMS1-201ENST00000332345 C7orf65Q6ZTY9 151 aa6.94□□□□□ -1.3
LIMS1-201ENST00000332345 TP53AIP1Q9HCN2 124 aa6.94□□□□□ -1.3
LIMS1-201ENST00000332345 ATP5EP2Q5VTU8 51 aa6.92□□□□□ -1.3
LIMS1-201ENST00000332345 HIST1H4AP62805 103 aaKnown RBP6.87□□□□□ -1.31
LIMS1-201ENST00000332345 H1FX-AS1Q4G0G2 97 aa6.86□□□□□ -1.31
LIMS1-201ENST00000332345 LINC00643Q86TS7 51 aa6.86□□□□□ -1.31
LIMS1-201ENST00000332345 KRTAP9-8Q9BYQ0 159 aa6.86□□□□□ -1.31
LIMS1-201ENST00000332345 J3QR89 54 aa6.83□□□□□ -1.32
LIMS1-201ENST00000332345 LCE3BQ5TA77 95 aa6.83□□□□□ -1.32
LIMS1-201ENST00000332345 C4orf26Q17RF5 130 aa6.81□□□□□ -1.32
LIMS1-201ENST00000332345 TRAV22A0A0B4J277 110 aa6.77□□□□□ -1.33
LIMS1-201ENST00000332345 MT2AP02795 61 aa6.77□□□□□ -1.33
LIMS1-201ENST00000332345 UQCRQO14949 82 aa6.75□□□□□ -1.33
LIMS1-201ENST00000332345 KRTAP10-10P60014 251 aa6.75□□□□□ -1.33
LIMS1-201ENST00000332345 FSIP2Q5CZC0 6907 aa6.74□□□□□ -1.33
LIMS1-201ENST00000332345 A0A087WVE0 104 aa6.74□□□□□ -1.33
LIMS1-201ENST00000332345 LOC101927531A0A1B0GV80 90 aa6.73□□□□□ -1.33
LIMS1-201ENST00000332345 C1orf64Q8NEQ6 169 aa6.73□□□□□ -1.33
LIMS1-201ENST00000332345 CYP4F30PQ9H0H9 118 aa6.73□□□□□ -1.33
LIMS1-201ENST00000332345 CRCT1Q9UGL9 99 aa6.73□□□□□ -1.33
LIMS1-201ENST00000332345 ATOX1O00244 68 aa6.71□□□□□ -1.34
LIMS1-201ENST00000332345 MT1FP04733 61 aa6.71□□□□□ -1.34
LIMS1-201ENST00000332345 H0Y9P7 68 aa6.69□□□□□ -1.34
LIMS1-201ENST00000332345 KRTAP3-1Q9BYR8 98 aa6.69□□□□□ -1.34
LIMS1-201ENST00000332345 S4R3F8 94 aa6.65□□□□□ -1.34
LIMS1-201ENST00000332345 KRTAP9-9Q9BYP9 154 aa6.64□□□□□ -1.35
LIMS1-201ENST00000332345 KRTAP9-4Q9BYQ2 154 aa6.64□□□□□ -1.35
LIMS1-201ENST00000332345 KRTAP9-3Q9BYQ3 159 aa6.64□□□□□ -1.35
LIMS1-201ENST00000332345 K7ERU9 68 aa6.63□□□□□ -1.35
LIMS1-201ENST00000332345 C5orf47Q569G3 176 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms