RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 IGLV9-49A0A0B4J1Y8 123 aa10.89□□□□□ -0.67
CLSTN3-202ENST00000331148 C14orf177Q52M58 125 aa10.89□□□□□ -0.67
CLSTN3-202ENST00000331148 KRTAP13-1Q8IUC0 172 aa10.89□□□□□ -0.67
CLSTN3-202ENST00000331148 DNAH10Q8IVF4 4471 aa10.89□□□□□ -0.67
CLSTN3-202ENST00000331148 VPS13DQ5THJ4 4388 aa10.87□□□□□ -0.67
CLSTN3-202ENST00000331148 Q6ZRN7 208 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-202ENST00000331148 MRPL34Q9BQ48 92 aaKnown RBP10.87□□□□□ -0.67
CLSTN3-202ENST00000331148 TGP01266 2768 aa10.83□□□□□ -0.68
CLSTN3-202ENST00000331148 CDK2AP2O75956 126 aa10.82□□□□□ -0.68
CLSTN3-202ENST00000331148 PRR26Q8N8Z3 221 aa10.82□□□□□ -0.68
CLSTN3-202ENST00000331148 A0A087X002 238 aa10.81□□□□□ -0.68
CLSTN3-202ENST00000331148 NOTCH2NLQ7Z3S9 236 aa10.81□□□□□ -0.68
CLSTN3-202ENST00000331148 LY6G6CO95867 125 aa10.79□□□□□ -0.68
CLSTN3-202ENST00000331148 PANO1I0J062 215 aa10.78□□□□□ -0.68
CLSTN3-202ENST00000331148 LINC00483Q53H64 154 aa10.78□□□□□ -0.68
CLSTN3-202ENST00000331148 LINC00313P59037 77 aa10.76□□□□□ -0.69
CLSTN3-202ENST00000331148 A0A087WTM6 91 aa10.73□□□□□ -0.69
CLSTN3-202ENST00000331148 Q5W150 140 aa10.73□□□□□ -0.69
CLSTN3-202ENST00000331148 KRTAP13-3Q3SY46 172 aa10.73□□□□□ -0.69
CLSTN3-202ENST00000331148 C1orf134Q5TEV5 83 aa10.72□□□□□ -0.69
CLSTN3-202ENST00000331148 PRAC1Q96KF2 57 aa10.71□□□□□ -0.69
CLSTN3-202ENST00000331148 ACYP2P14621 99 aa10.7□□□□□ -0.7
CLSTN3-202ENST00000331148 KMT2AQ03164 3969 aa10.7□□□□□ -0.7
CLSTN3-202ENST00000331148 C8orf87E5RJ46 101 aa10.68□□□□□ -0.7
CLSTN3-202ENST00000331148 ZNF706Q9Y5V0 76 aaPredicted RBP10.68□□□□□ -0.7
CLSTN3-202ENST00000331148 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.65□□□□□ -0.7
CLSTN3-202ENST00000331148 SPACA4Q8TDM5 124 aa10.64□□□□□ -0.71
CLSTN3-202ENST00000331148 ANAPC11Q9NYG5 84 aa10.64□□□□□ -0.71
CLSTN3-202ENST00000331148 DNAH2Q9P225 4427 aa10.64□□□□□ -0.71
CLSTN3-202ENST00000331148 ADM2Q7Z4H4 148 aa10.64□□□□□ -0.71
CLSTN3-202ENST00000331148 DMAC1Q96GE9 116 aa10.64□□□□□ -0.71
CLSTN3-202ENST00000331148 PLA2G1BP04054 148 aaKnown RBP10.63□□□□□ -0.71
CLSTN3-202ENST00000331148 ALMS1Q8TCU4 4167 aa10.63□□□□□ -0.71
CLSTN3-202ENST00000331148 SPINK6Q6UWN8 80 aa10.61□□□□□ -0.71
CLSTN3-202ENST00000331148 RTL8CO15255 209 aa10.61□□□□□ -0.71
CLSTN3-202ENST00000331148 A0A1B0GU69 56 aa10.59□□□□□ -0.71
CLSTN3-202ENST00000331148 DNAH6Q9C0G6 4158 aa10.59□□□□□ -0.71
CLSTN3-202ENST00000331148 SPATA8Q6RVD6 105 aa10.57□□□□□ -0.72
CLSTN3-202ENST00000331148 IGLV5-52A0A0A0MRZ9 124 aa10.56□□□□□ -0.72
CLSTN3-202ENST00000331148 PSORS1C2Q9UIG4 136 aa10.55□□□□□ -0.72
CLSTN3-202ENST00000331148 DNAH17Q9UFH2 4485 aa10.53□□□□□ -0.72
CLSTN3-202ENST00000331148 LINC01554Q52M75 96 aa10.52□□□□□ -0.73
CLSTN3-202ENST00000331148 ZNF861PO60384 105 aa10.51□□□□□ -0.73
CLSTN3-202ENST00000331148 HYDINQ4G0P3 5121 aa10.51□□□□□ -0.73
CLSTN3-202ENST00000331148 HECTD4Q9Y4D8 3996 aa10.5□□□□□ -0.73
CLSTN3-202ENST00000331148 MIR22HGQ0VDD5 57 aa10.49□□□□□ -0.73
CLSTN3-202ENST00000331148 FAM229AH3BQW9 127 aa10.46□□□□□ -0.73
CLSTN3-202ENST00000331148 UQCR11O14957 56 aa10.46□□□□□ -0.74
CLSTN3-202ENST00000331148 KRTAP10-2P60368 255 aa10.45□□□□□ -0.74
CLSTN3-202ENST00000331148 CIRBP-AS1Q8TBR5 109 aa10.45□□□□□ -0.74
CLSTN3-202ENST00000331148 IGKV2-30P06310 120 aa10.45□□□□□ -0.74
CLSTN3-202ENST00000331148 RETNLBQ9BQ08 111 aa10.45□□□□□ -0.74
CLSTN3-202ENST00000331148 FRAS1Q86XX4 4008 aa10.44□□□□□ -0.74
CLSTN3-202ENST00000331148 C4orf48Q5BLP8 95 aa10.44□□□□□ -0.74
CLSTN3-202ENST00000331148 DNAH8Q96JB1 4490 aa10.43□□□□□ -0.74
CLSTN3-202ENST00000331148 DNAH11Q96DT5 4516 aa10.38□□□□□ -0.75
CLSTN3-202ENST00000331148 SACSQ9NZJ4 4579 aa10.36□□□□□ -0.75
CLSTN3-202ENST00000331148 FAT2Q9NYQ8 4349 aa10.34□□□□□ -0.75
CLSTN3-202ENST00000331148 DNAH5Q8TE73 4624 aa10.33□□□□□ -0.76
CLSTN3-202ENST00000331148 IGLV7-43P04211 117 aa10.32□□□□□ -0.76
CLSTN3-202ENST00000331148 KRTAP10-1P60331 282 aa10.32□□□□□ -0.76
CLSTN3-202ENST00000331148 CSAG1Q6PB30 78 aa10.32□□□□□ -0.76
CLSTN3-202ENST00000331148 SSBP3-AS1Q7Z2R9 100 aa10.32□□□□□ -0.76
CLSTN3-202ENST00000331148 PKD1P98161 4303 aa10.32□□□□□ -0.76
CLSTN3-202ENST00000331148 Q6ZSA8 131 aa10.3□□□□□ -0.76
CLSTN3-202ENST00000331148 KRTAP16-1A8MUX0 517 aa10.27□□□□□ -0.76
CLSTN3-202ENST00000331148 IGKV2D-30A0A075B6S6 120 aa10.26□□□□□ -0.77
CLSTN3-202ENST00000331148 H3BS24 57 aa10.21□□□□□ -0.77
CLSTN3-202ENST00000331148 RYR2Q92736 4967 aa10.17□□□□□ -0.78
CLSTN3-202ENST00000331148 A0A1B0GVY2 172 aa10.16□□□□□ -0.78
CLSTN3-202ENST00000331148 KRTAP13-2Q52LG2 175 aa10.15□□□□□ -0.78
CLSTN3-202ENST00000331148 KMT2CQ8NEZ4 4911 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-202ENST00000331148 SPINK1P00995 79 aa10.13□□□□□ -0.79
CLSTN3-202ENST00000331148 LRP1BQ9NZR2 4599 aa10.1□□□□□ -0.79
CLSTN3-202ENST00000331148 PKHD1P08F94 4074 aa10.08□□□□□ -0.8
CLSTN3-202ENST00000331148 Q8N1X5 172 aa10.07□□□□□ -0.8
CLSTN3-202ENST00000331148 A8MUU9 505 aa10.04□□□□□ -0.8
CLSTN3-202ENST00000331148 H0YAA0 97 aa10.04□□□□□ -0.8
CLSTN3-202ENST00000331148 DYNC1H1Q14204 4646 aaKnown RBP10.02□□□□□ -0.8
CLSTN3-202ENST00000331148 KRTAP25-1Q3LHN0 102 aa9.99□□□□□ -0.81
CLSTN3-202ENST00000331148 LINC00304Q8N9R0 145 aa9.96□□□□□ -0.81
CLSTN3-202ENST00000331148 SMR3BP02814 79 aaPredicted RBP9.95□□□□□ -0.82
CLSTN3-202ENST00000331148 VPS13BQ7Z7G8 4022 aa9.95□□□□□ -0.82
CLSTN3-202ENST00000331148 TYMSOSQ8TAI1 123 aa9.94□□□□□ -0.82
CLSTN3-202ENST00000331148 KRTAP1-4P0C5Y4 121 aa9.93□□□□□ -0.82
CLSTN3-202ENST00000331148 RYR3Q15413 4870 aa9.91□□□□□ -0.82
CLSTN3-202ENST00000331148 APOBP04114 4563 aaKnown RBP9.89□□□□□ -0.83
CLSTN3-202ENST00000331148 A0A1B0GU33 70 aa9.89□□□□□ -0.83
CLSTN3-202ENST00000331148 ROMO1P60602 79 aa9.86□□□□□ -0.83
CLSTN3-202ENST00000331148 H1FX-AS1Q4G0G2 97 aa9.85□□□□□ -0.83
CLSTN3-202ENST00000331148 KRTAP10-4P60372 401 aaPredicted RBP9.82□□□□□ -0.84
CLSTN3-202ENST00000331148 FAT1Q14517 4588 aa9.78□□□□□ -0.84
CLSTN3-202ENST00000331148 KRTAP3-1Q9BYR8 98 aa9.77□□□□□ -0.84
CLSTN3-202ENST00000331148 CRIPTQ9P021 101 aa9.7□□□□□ -0.86
CLSTN3-202ENST00000331148 K7ERS5 55 aa9.68□□□□□ -0.86
CLSTN3-202ENST00000331148 Q5VSD8 79 aa9.65□□□□□ -0.86
CLSTN3-202ENST00000331148 C20orf166-AS1Q96NR2 134 aa9.65□□□□□ -0.86
CLSTN3-202ENST00000331148 RPS29P62273 56 aaKnown RBP9.65□□□□□ -0.87
CLSTN3-202ENST00000331148 COX6B2Q6YFQ2 88 aa9.64□□□□□ -0.87
CLSTN3-202ENST00000331148 C9orf92A6NGG3 77 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms