RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ASB16-AS1Q495Z4 193 aa4.61□□□□□ -1.67
CIITA-201ENST00000324288 REV3LO60673 3130 aa4.6□□□□□ -1.67
CIITA-201ENST00000324288 PANO1I0J062 215 aa4.6□□□□□ -1.67
CIITA-201ENST00000324288 SPRR1BP22528 89 aa4.6□□□□□ -1.67
CIITA-201ENST00000324288 HTTP42858 3142 aa4.6□□□□□ -1.67
CIITA-201ENST00000324288 XIRP2A4UGR9 3374 aa4.59□□□□□ -1.67
CIITA-201ENST00000324288 ADGRG4Q8IZF6 3080 aa4.59□□□□□ -1.67
CIITA-201ENST00000324288 KRTAP29-1A8MX34 341 aaPredicted RBP4.59□□□□□ -1.68
CIITA-201ENST00000324288 C10orf95Q9H7T3 257 aa4.58□□□□□ -1.68
CIITA-201ENST00000324288 MKI67P46013 3256 aaKnown RBP4.57□□□□□ -1.68
CIITA-201ENST00000324288 LAMA1P25391 3075 aa4.55□□□□□ -1.68
CIITA-201ENST00000324288 LCE6AA0A183 80 aa4.55□□□□□ -1.68
CIITA-201ENST00000324288 DMXL1Q9Y485 3027 aa4.54□□□□□ -1.68
CIITA-201ENST00000324288 CELSR1Q9NYQ6 3014 aa4.54□□□□□ -1.68
CIITA-201ENST00000324288 CELSR3Q9NYQ7 3312 aa4.54□□□□□ -1.68
CIITA-201ENST00000324288 ATMQ13315 3056 aa4.54□□□□□ -1.68
CIITA-201ENST00000324288 A8MUU9 505 aa4.51□□□□□ -1.69
CIITA-201ENST00000324288 KRTAP4-16G5E9R7 235 aaPredicted RBP4.51□□□□□ -1.69
CIITA-201ENST00000324288 BRCA2P51587 3418 aa4.51□□□□□ -1.69
CIITA-201ENST00000324288 KRTAP11-1Q8IUC1 163 aa4.5□□□□□ -1.69
CIITA-201ENST00000324288 MXRA5Q9NR99 2828 aa4.49□□□□□ -1.69
CIITA-201ENST00000324288 LAMA3Q16787 3333 aa4.48□□□□□ -1.69
CIITA-201ENST00000324288 COL6A3P12111 3177 aa4.46□□□□□ -1.7
CIITA-201ENST00000324288 BOD1L1Q8NFC6 3051 aa4.45□□□□□ -1.7
CIITA-201ENST00000324288 TENM2Q9NT68 2774 aa4.42□□□□□ -1.7
CIITA-201ENST00000324288 COL7A1Q02388 2944 aa4.42□□□□□ -1.7
CIITA-201ENST00000324288 CFAP47Q6ZTR5 3102 aa4.41□□□□□ -1.7
CIITA-201ENST00000324288 KRTAP13-2Q52LG2 175 aa4.38□□□□□ -1.71
CIITA-201ENST00000324288 VCANP13611 3396 aa4.37□□□□□ -1.71
CIITA-201ENST00000324288 KRTAP7-1Q8IUC3 87 aa4.37□□□□□ -1.71
CIITA-201ENST00000324288 HRNRQ86YZ3 2850 aaPredicted RBP4.36□□□□□ -1.71
CIITA-201ENST00000324288 UNC80Q8N2C7 3258 aa4.35□□□□□ -1.71
CIITA-201ENST00000324288 TNP1P09430 55 aa4.35□□□□□ -1.71
CIITA-201ENST00000324288 A0A1B0GVY2 172 aa4.35□□□□□ -1.71
CIITA-201ENST00000324288 DNAH14Q0VDD8 3507 aa4.33□□□□□ -1.72
CIITA-201ENST00000324288 KRTAP10-8P60410 259 aa4.33□□□□□ -1.72
CIITA-201ENST00000324288 H0YAA0 97 aa4.32□□□□□ -1.72
CIITA-201ENST00000324288 P0C880 135 aa4.31□□□□□ -1.72
CIITA-201ENST00000324288 MEGF8Q7Z7M0 2845 aa4.31□□□□□ -1.72
CIITA-201ENST00000324288 Q6ZRN7 208 aaPredicted RBP4.3□□□□□ -1.72
CIITA-201ENST00000324288 FBN3Q75N90 2809 aa4.29□□□□□ -1.72
CIITA-201ENST00000324288 SPEGQ15772 3267 aa4.27□□□□□ -1.73
CIITA-201ENST00000324288 USP34Q70CQ2 3546 aa4.26□□□□□ -1.73
CIITA-201ENST00000324288 RPS29P62273 56 aaKnown RBP4.25□□□□□ -1.73
CIITA-201ENST00000324288 CDH23Q9H251 3354 aa4.25□□□□□ -1.73
CIITA-201ENST00000324288 KRTAP13-1Q8IUC0 172 aa4.23□□□□□ -1.73
CIITA-201ENST00000324288 PP632Q6XCG6 107 aa4.19□□□□□ -1.74
CIITA-201ENST00000324288 EYSQ5T1H1 3165 aa4.18□□□□□ -1.74
CIITA-201ENST00000324288 FBN1P35555 2871 aaKnown RBP4.18□□□□□ -1.74
CIITA-201ENST00000324288 SPTBN5Q9NRC6 3674 aaKnown RBP4.18□□□□□ -1.74
CIITA-201ENST00000324288 NBPF19A0A087WUL8 3843 aa4.18□□□□□ -1.74
CIITA-201ENST00000324288 SZT2Q5T011 3432 aa4.17□□□□□ -1.74
CIITA-201ENST00000324288 MYO15AQ9UKN7 3530 aa4.17□□□□□ -1.74
CIITA-201ENST00000324288 KRTAP10-10P60014 251 aa4.16□□□□□ -1.74
CIITA-201ENST00000324288 XP32Q5T750 250 aa4.15□□□□□ -1.74
CIITA-201ENST00000324288 OTOGQ6ZRI0 2925 aa4.12□□□□□ -1.75
CIITA-201ENST00000324288 AKAP9Q99996 3911 aa4.08□□□□□ -1.76
CIITA-201ENST00000324288 WDFY3Q8IZQ1 3526 aa4.07□□□□□ -1.76
CIITA-201ENST00000324288 ALMS1Q8TCU4 4167 aa4.05□□□□□ -1.76
CIITA-201ENST00000324288 KRTAP1-4P0C5Y4 121 aa4.05□□□□□ -1.76
CIITA-201ENST00000324288 KRTAP12-2P59991 146 aa4.04□□□□□ -1.76
CIITA-201ENST00000324288 TPRXLQ17RH7 258 aa4.04□□□□□ -1.76
CIITA-201ENST00000324288 ZFHX4Q86UP3 3567 aa4.04□□□□□ -1.76
CIITA-201ENST00000324288 PRO2289Q9P1D8 64 aa4.03□□□□□ -1.76
CIITA-201ENST00000324288 ZFHX3Q15911 3703 aa4.03□□□□□ -1.76
CIITA-201ENST00000324288 DMDP11532 3685 aa4□□□□□ -1.77
CIITA-201ENST00000324288 SMG1Q96Q15 3661 aaKnown RBP3.98□□□□□ -1.77
CIITA-201ENST00000324288 LAMA5O15230 3695 aa3.96□□□□□ -1.78
CIITA-201ENST00000324288 BSNQ9UPA5 3926 aa3.94□□□□□ -1.78
CIITA-201ENST00000324288 KRTAP13-3Q3SY46 172 aa3.94□□□□□ -1.78
CIITA-201ENST00000324288 LOC400499M0QZD8 3231 aa3.93□□□□□ -1.78
CIITA-201ENST00000324288 ASPMQ8IZT6 3477 aa3.93□□□□□ -1.78
CIITA-201ENST00000324288 DNAH1Q9P2D7 4330 aa3.9□□□□□ -1.78
CIITA-201ENST00000324288 KRTAP15-1Q3LI76 137 aa3.9□□□□□ -1.79
CIITA-201ENST00000324288 SPENQ96T58 3664 aaKnown RBP3.89□□□□□ -1.79
CIITA-201ENST00000324288 DCHS1Q96JQ0 3298 aa3.89□□□□□ -1.79
CIITA-201ENST00000324288 KRTAP12-1P59990 96 aa3.88□□□□□ -1.79
CIITA-201ENST00000324288 KRTAP13-4Q3LI77 160 aa3.87□□□□□ -1.79
CIITA-201ENST00000324288 TRRAPQ9Y4A5 3859 aa3.87□□□□□ -1.79
CIITA-201ENST00000324288 DNAH3Q8TD57 4116 aa3.85□□□□□ -1.79
CIITA-201ENST00000324288 CSMD1Q96PZ7 3565 aa3.83□□□□□ -1.8
CIITA-201ENST00000324288 CMYA5Q8N3K9 4069 aa3.83□□□□□ -1.8
CIITA-201ENST00000324288 RELNP78509 3460 aa3.82□□□□□ -1.8
CIITA-201ENST00000324288 DNAH2Q9P225 4427 aa3.81□□□□□ -1.8
CIITA-201ENST00000324288 KRTAP21-3Q3LHN1 58 aa3.81□□□□□ -1.8
CIITA-201ENST00000324288 CRCT1Q9UGL9 99 aa3.8□□□□□ -1.8
CIITA-201ENST00000324288 VPS13CQ709C8 3753 aa3.78□□□□□ -1.8
CIITA-201ENST00000324288 ZNF469Q96JG9 3925 aaPredicted RBP3.77□□□□□ -1.81
CIITA-201ENST00000324288 HUWE1Q7Z6Z7 4374 aaKnown RBP3.74□□□□□ -1.81
CIITA-201ENST00000324288 KRTAP3-1Q9BYR8 98 aa3.74□□□□□ -1.81
CIITA-201ENST00000324288 DNAH7Q8WXX0 4024 aa3.72□□□□□ -1.81
CIITA-201ENST00000324288 LYSTQ99698 3801 aa3.7□□□□□ -1.82
CIITA-201ENST00000324288 HECTD4Q9Y4D8 3996 aa3.7□□□□□ -1.82
CIITA-201ENST00000324288 CUBNO60494 3623 aa3.68□□□□□ -1.82
CIITA-201ENST00000324288 KRTAP10-6P60371 365 aaPredicted RBP3.68□□□□□ -1.82
CIITA-201ENST00000324288 INE1O15225 51 aa3.66□□□□□ -1.82
CIITA-201ENST00000324288 ANK3Q12955 4377 aaKnown RBP3.66□□□□□ -1.82
CIITA-201ENST00000324288 CSMD3Q7Z407 3707 aa3.66□□□□□ -1.82
CIITA-201ENST00000324288 DNAH11Q96DT5 4516 aa3.64□□□□□ -1.83
CIITA-201ENST00000324288 SVEP1Q4LDE5 3571 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms