RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 DNAH6Q9C0G6 4158 aa9.41□□□□□ -0.9
SHROOM1-201ENST00000319854 NDUFS5O43920 106 aa9.41□□□□□ -0.9
SHROOM1-201ENST00000319854 MMP24-AS1A0A0U1RRL7 71 aa9.4□□□□□ -0.9
SHROOM1-201ENST00000319854 C1orf134Q5TEV5 83 aa9.4□□□□□ -0.9
SHROOM1-201ENST00000319854 Q6ZR54 194 aa9.37□□□□□ -0.91
SHROOM1-201ENST00000319854 CDC42SE1Q9NRR8 79 aa9.37□□□□□ -0.91
SHROOM1-201ENST00000319854 KRTAP13-1Q8IUC0 172 aa9.37□□□□□ -0.91
SHROOM1-201ENST00000319854 MOBPQ13875 183 aa9.36□□□□□ -0.91
SHROOM1-201ENST00000319854 DNAH17Q9UFH2 4485 aa9.36□□□□□ -0.91
SHROOM1-201ENST00000319854 SPINK7P58062 85 aa9.35□□□□□ -0.91
SHROOM1-201ENST00000319854 C8orf87E5RJ46 101 aa9.34□□□□□ -0.91
SHROOM1-201ENST00000319854 SPRR1BP22528 89 aa9.34□□□□□ -0.91
SHROOM1-201ENST00000319854 DNAH8Q96JB1 4490 aa9.34□□□□□ -0.91
SHROOM1-201ENST00000319854 PLAC8Q9NZF1 115 aa9.34□□□□□ -0.91
SHROOM1-201ENST00000319854 DNAH11Q96DT5 4516 aa9.33□□□□□ -0.92
SHROOM1-201ENST00000319854 LINC01558Q9Y6Z2 57 aa9.33□□□□□ -0.92
SHROOM1-201ENST00000319854 H3BS24 57 aa9.33□□□□□ -0.92
SHROOM1-201ENST00000319854 C7orf65Q6ZTY9 151 aa9.32□□□□□ -0.92
SHROOM1-201ENST00000319854 KRTAP10-2P60368 255 aa9.31□□□□□ -0.92
SHROOM1-201ENST00000319854 HRES1P13985 223 aa9.29□□□□□ -0.92
SHROOM1-201ENST00000319854 Q96NJ1 140 aa9.28□□□□□ -0.92
SHROOM1-201ENST00000319854 SPINK6Q6UWN8 80 aa9.27□□□□□ -0.93
SHROOM1-201ENST00000319854 ZNF861PO60384 105 aa9.27□□□□□ -0.93
SHROOM1-201ENST00000319854 HYDINQ4G0P3 5121 aa9.27□□□□□ -0.93
SHROOM1-201ENST00000319854 ASB16-AS1Q495Z4 193 aa9.26□□□□□ -0.93
SHROOM1-201ENST00000319854 WWC2-AS2Q96NR7 200 aa9.25□□□□□ -0.93
SHROOM1-201ENST00000319854 CIRBP-AS1Q8TBR5 109 aa9.24□□□□□ -0.93
SHROOM1-201ENST00000319854 IGHV6-1A0A0B4J1U7 121 aa9.24□□□□□ -0.93
SHROOM1-201ENST00000319854 C8orf17Q9NRJ1 99 aa9.22□□□□□ -0.93
SHROOM1-201ENST00000319854 DNAH5Q8TE73 4624 aa9.22□□□□□ -0.93
SHROOM1-201ENST00000319854 PRR26Q8N8Z3 221 aa9.21□□□□□ -0.93
SHROOM1-201ENST00000319854 PRAC1Q96KF2 57 aa9.21□□□□□ -0.93
SHROOM1-201ENST00000319854 ZNF706Q9Y5V0 76 aaPredicted RBP9.21□□□□□ -0.93
SHROOM1-201ENST00000319854 A0A087X002 238 aa9.2□□□□□ -0.94
SHROOM1-201ENST00000319854 NOTCH2NLQ7Z3S9 236 aa9.2□□□□□ -0.94
SHROOM1-201ENST00000319854 TP53AIP1Q9HCN2 124 aa9.2□□□□□ -0.94
SHROOM1-201ENST00000319854 IGLV7-43P04211 117 aa9.2□□□□□ -0.94
SHROOM1-201ENST00000319854 LINC00483Q53H64 154 aa9.18□□□□□ -0.94
SHROOM1-201ENST00000319854 LRP1BQ9NZR2 4599 aa9.18□□□□□ -0.94
SHROOM1-201ENST00000319854 CDK2AP2O75956 126 aa9.17□□□□□ -0.94
SHROOM1-201ENST00000319854 KRTAP10-1P60331 282 aa9.15□□□□□ -0.94
SHROOM1-201ENST00000319854 ALMS1Q8TCU4 4167 aa9.14□□□□□ -0.95
SHROOM1-201ENST00000319854 LINC00313P59037 77 aa9.14□□□□□ -0.95
SHROOM1-201ENST00000319854 ADM2Q7Z4H4 148 aa9.13□□□□□ -0.95
SHROOM1-201ENST00000319854 A0A1B0GVX0 72 aa9.12□□□□□ -0.95
SHROOM1-201ENST00000319854 Q5W150 140 aa9.11□□□□□ -0.95
SHROOM1-201ENST00000319854 MRPL34Q9BQ48 92 aaKnown RBP9.11□□□□□ -0.95
SHROOM1-201ENST00000319854 PKHD1P08F94 4074 aa9.1□□□□□ -0.95
SHROOM1-201ENST00000319854 RETNLBQ9BQ08 111 aa9.08□□□□□ -0.96
SHROOM1-201ENST00000319854 FAT2Q9NYQ8 4349 aa9.06□□□□□ -0.96
SHROOM1-201ENST00000319854 PKD1P98161 4303 aa9.06□□□□□ -0.96
SHROOM1-201ENST00000319854 VPS13BQ7Z7G8 4022 aa9.06□□□□□ -0.96
SHROOM1-201ENST00000319854 LINC01554Q52M75 96 aa9.05□□□□□ -0.96
SHROOM1-201ENST00000319854 KRTAP13-3Q3SY46 172 aa9.02□□□□□ -0.97
SHROOM1-201ENST00000319854 KRTAP13-2Q52LG2 175 aa8.99□□□□□ -0.97
SHROOM1-201ENST00000319854 SMR3BP02814 79 aaPredicted RBP8.98□□□□□ -0.97
SHROOM1-201ENST00000319854 ACYP2P14621 99 aa8.97□□□□□ -0.97
SHROOM1-201ENST00000319854 PLA2G1BP04054 148 aaKnown RBP8.95□□□□□ -0.98
SHROOM1-201ENST00000319854 Q6ZSA8 131 aa8.94□□□□□ -0.98
SHROOM1-201ENST00000319854 SSBP3-AS1Q7Z2R9 100 aa8.94□□□□□ -0.98
SHROOM1-201ENST00000319854 SACSQ9NZJ4 4579 aa8.92□□□□□ -0.98
SHROOM1-201ENST00000319854 A0A1B0GU69 56 aa8.9□□□□□ -0.98
SHROOM1-201ENST00000319854 DMAC1Q96GE9 116 aa8.9□□□□□ -0.98
SHROOM1-201ENST00000319854 FAT1Q14517 4588 aa8.89□□□□□ -0.99
SHROOM1-201ENST00000319854 SPATA8Q6RVD6 105 aa8.89□□□□□ -0.99
SHROOM1-201ENST00000319854 KRTAP21-3Q3LHN1 58 aa8.88□□□□□ -0.99
SHROOM1-201ENST00000319854 KRTAP1-4P0C5Y4 121 aa8.87□□□□□ -0.99
SHROOM1-201ENST00000319854 TYMSOSQ8TAI1 123 aa8.85□□□□□ -0.99
SHROOM1-201ENST00000319854 MIR22HGQ0VDD5 57 aa8.83□□□□□ -1
SHROOM1-201ENST00000319854 DYNC1H1Q14204 4646 aaKnown RBP8.82□□□□□ -1
SHROOM1-201ENST00000319854 KMT2CQ8NEZ4 4911 aaKnown RBP8.8□□□□□ -1
SHROOM1-201ENST00000319854 CSAG1Q6PB30 78 aa8.79□□□□□ -1
SHROOM1-201ENST00000319854 UQCR11O14957 56 aa8.78□□□□□ -1
SHROOM1-201ENST00000319854 IGKV2-30P06310 120 aa8.75□□□□□ -1.01
SHROOM1-201ENST00000319854 IGKV2D-30A0A075B6S6 120 aa8.74□□□□□ -1.01
SHROOM1-201ENST00000319854 FAM229AH3BQW9 127 aa8.71□□□□□ -1.01
SHROOM1-201ENST00000319854 LINC00304Q8N9R0 145 aa8.69□□□□□ -1.02
SHROOM1-201ENST00000319854 FLG2Q5D862 2391 aaPredicted RBP8.68□□□□□ -1.02
SHROOM1-201ENST00000319854 SPINK1P00995 79 aa8.67□□□□□ -1.02
SHROOM1-201ENST00000319854 C9orf92A6NGG3 77 aa8.67□□□□□ -1.02
SHROOM1-201ENST00000319854 KRTAP16-1A8MUX0 517 aa8.65□□□□□ -1.03
SHROOM1-201ENST00000319854 DMBT1Q9UGM3 2413 aaPredicted RBP8.64□□□□□ -1.03
SHROOM1-201ENST00000319854 APOBP04114 4563 aaKnown RBP8.63□□□□□ -1.03
SHROOM1-201ENST00000319854 RYR2Q92736 4967 aa8.61□□□□□ -1.03
SHROOM1-201ENST00000319854 A0A1B0GVY2 172 aa8.59□□□□□ -1.04
SHROOM1-201ENST00000319854 Q8N1X5 172 aa8.57□□□□□ -1.04
SHROOM1-201ENST00000319854 LRP1Q07954 4544 aaKnown RBP8.57□□□□□ -1.04
SHROOM1-201ENST00000319854 H0YAA0 97 aa8.49□□□□□ -1.05
SHROOM1-201ENST00000319854 KRTAP10-4P60372 401 aaPredicted RBP8.49□□□□□ -1.05
SHROOM1-201ENST00000319854 A8MUU9 505 aa8.47□□□□□ -1.05
SHROOM1-201ENST00000319854 RYR3Q15413 4870 aa8.46□□□□□ -1.05
SHROOM1-201ENST00000319854 MYCBP2O75592 4640 aa8.46□□□□□ -1.06
SHROOM1-201ENST00000319854 ROMO1P60602 79 aa8.45□□□□□ -1.06
SHROOM1-201ENST00000319854 PKHD1L1Q86WI1 4243 aa8.42□□□□□ -1.06
SHROOM1-201ENST00000319854 KRTAP25-1Q3LHN0 102 aa8.42□□□□□ -1.06
SHROOM1-201ENST00000319854 CRIPTQ9P021 101 aa8.38□□□□□ -1.07
SHROOM1-201ENST00000319854 KIAA1109Q2LD37 5005 aa8.37□□□□□ -1.07
SHROOM1-201ENST00000319854 Q5VSD8 79 aa8.36□□□□□ -1.07
SHROOM1-201ENST00000319854 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
SHROOM1-201ENST00000319854 HSPG2P98160 4391 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms