RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SPATA8Q6RVD6 105 aa6.89□□□□□ -1.31
VPS39-201ENST00000318006 RPL37P61927 97 aaKnown RBP6.88□□□□□ -1.31
VPS39-201ENST00000318006 LINC00483Q53H64 154 aa6.88□□□□□ -1.31
VPS39-201ENST00000318006 FBN2P35556 2912 aa6.88□□□□□ -1.31
VPS39-201ENST00000318006 KRTAP4-16G5E9R7 235 aaPredicted RBP6.88□□□□□ -1.31
VPS39-201ENST00000318006 LCE6AA0A183 80 aa6.88□□□□□ -1.31
VPS39-201ENST00000318006 SMG1Q96Q15 3661 aaKnown RBP6.88□□□□□ -1.31
VPS39-201ENST00000318006 CAMK2N1Q7Z7J9 78 aa6.87□□□□□ -1.31
VPS39-201ENST00000318006 H1FX-AS1Q4G0G2 97 aa6.85□□□□□ -1.31
VPS39-201ENST00000318006 STAB2Q8WWQ8 2551 aa6.83□□□□□ -1.32
VPS39-201ENST00000318006 MXRA5Q9NR99 2828 aa6.83□□□□□ -1.32
VPS39-201ENST00000318006 S4R3F8 94 aa6.82□□□□□ -1.32
VPS39-201ENST00000318006 Q6ZSA8 131 aa6.79□□□□□ -1.32
VPS39-201ENST00000318006 PANO1I0J062 215 aa6.78□□□□□ -1.32
VPS39-201ENST00000318006 KRTAP10-1P60331 282 aa6.78□□□□□ -1.32
VPS39-201ENST00000318006 KRTAP10-2P60368 255 aa6.78□□□□□ -1.32
VPS39-201ENST00000318006 A8MU10 97 aa6.77□□□□□ -1.33
VPS39-201ENST00000318006 KRTAP25-1Q3LHN0 102 aa6.77□□□□□ -1.33
VPS39-201ENST00000318006 NIPBLQ6KC79 2804 aaeCLIP6.76□□□□□ -1.33
VPS39-201ENST00000318006 KRTAP16-1A8MUX0 517 aa6.76□□□□□ -1.33
VPS39-201ENST00000318006 ADM2Q7Z4H4 148 aa6.75□□□□□ -1.33
VPS39-201ENST00000318006 CSMD1Q96PZ7 3565 aa6.74□□□□□ -1.33
VPS39-201ENST00000318006 SPENQ96T58 3664 aaKnown RBP6.72□□□□□ -1.33
VPS39-201ENST00000318006 TENM4Q6N022 2769 aa6.72□□□□□ -1.33
VPS39-201ENST00000318006 KMT2BQ9UMN6 2715 aaPredicted RBP6.71□□□□□ -1.33
VPS39-201ENST00000318006 R4GN34 69 aa6.71□□□□□ -1.34
VPS39-201ENST00000318006 FLG2Q5D862 2391 aaPredicted RBP6.71□□□□□ -1.34
VPS39-201ENST00000318006 A0A087X002 238 aa6.69□□□□□ -1.34
VPS39-201ENST00000318006 NOTCH2NLQ7Z3S9 236 aa6.69□□□□□ -1.34
VPS39-201ENST00000318006 CELSR1Q9NYQ6 3014 aa6.69□□□□□ -1.34
VPS39-201ENST00000318006 SVEP1Q4LDE5 3571 aa6.68□□□□□ -1.34
VPS39-201ENST00000318006 BSNQ9UPA5 3926 aa6.67□□□□□ -1.34
VPS39-201ENST00000318006 DMBT1Q9UGM3 2413 aaPredicted RBP6.67□□□□□ -1.34
VPS39-201ENST00000318006 Q6ZRN7 208 aaPredicted RBP6.66□□□□□ -1.34
VPS39-201ENST00000318006 KRTAP7-1Q8IUC3 87 aa6.65□□□□□ -1.35
VPS39-201ENST00000318006 KRTAP11-1Q8IUC1 163 aa6.65□□□□□ -1.35
VPS39-201ENST00000318006 Q5VSD8 79 aa6.64□□□□□ -1.35
VPS39-201ENST00000318006 PDZD2O15018 2839 aa6.63□□□□□ -1.35
VPS39-201ENST00000318006 NBPF19A0A087WUL8 3843 aa6.6□□□□□ -1.35
VPS39-201ENST00000318006 NDUFAF8A1L188 74 aa6.6□□□□□ -1.35
VPS39-201ENST00000318006 M0QZ58 72 aa6.6□□□□□ -1.35
VPS39-201ENST00000318006 KRTAP13-1Q8IUC0 172 aa6.53□□□□□ -1.36
VPS39-201ENST00000318006 TENM1Q9UKZ4 2725 aa6.53□□□□□ -1.36
VPS39-201ENST00000318006 CSMD2Q7Z408 3487 aa6.51□□□□□ -1.37
VPS39-201ENST00000318006 SEC61BP60468 96 aaKnown RBP6.51□□□□□ -1.37
VPS39-201ENST00000318006 A8MUU9 505 aa6.49□□□□□ -1.37
VPS39-201ENST00000318006 OTOGQ6ZRI0 2925 aa6.49□□□□□ -1.37
VPS39-201ENST00000318006 RPS29P62273 56 aaKnown RBP6.46□□□□□ -1.38
VPS39-201ENST00000318006 M0R2T5 61 aa6.46□□□□□ -1.38
VPS39-201ENST00000318006 KRTAP13-2Q52LG2 175 aa6.46□□□□□ -1.38
VPS39-201ENST00000318006 TENM3Q9P273 2699 aa6.44□□□□□ -1.38
VPS39-201ENST00000318006 VWFP04275 2813 aa6.44□□□□□ -1.38
VPS39-201ENST00000318006 PLAC4Q8WY50 150 aa6.42□□□□□ -1.38
VPS39-201ENST00000318006 CUBNO60494 3623 aa6.41□□□□□ -1.38
VPS39-201ENST00000318006 ZFHX3Q15911 3703 aa6.4□□□□□ -1.38
VPS39-201ENST00000318006 KRTAP21-3Q3LHN1 58 aa6.4□□□□□ -1.38
VPS39-201ENST00000318006 FBN1P35555 2871 aaKnown RBP6.36□□□□□ -1.39
VPS39-201ENST00000318006 C20orf166-AS1Q96NR2 134 aa6.34□□□□□ -1.39
VPS39-201ENST00000318006 ANK3Q12955 4377 aaKnown RBP6.34□□□□□ -1.39
VPS39-201ENST00000318006 VPS13CQ709C8 3753 aa6.3□□□□□ -1.4
VPS39-201ENST00000318006 H0YAA0 97 aa6.26□□□□□ -1.41
VPS39-201ENST00000318006 C10orf95Q9H7T3 257 aa6.24□□□□□ -1.41
VPS39-201ENST00000318006 TRRAPQ9Y4A5 3859 aa6.22□□□□□ -1.41
VPS39-201ENST00000318006 KRTAP1-4P0C5Y4 121 aa6.21□□□□□ -1.42
VPS39-201ENST00000318006 P0C880 135 aa6.17□□□□□ -1.42
VPS39-201ENST00000318006 TNP1P09430 55 aa6.17□□□□□ -1.42
VPS39-201ENST00000318006 PKD1L1Q8TDX9 2849 aa6.17□□□□□ -1.42
VPS39-201ENST00000318006 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
VPS39-201ENST00000318006 ZNF469Q96JG9 3925 aaPredicted RBP6.16□□□□□ -1.42
VPS39-201ENST00000318006 TENM2Q9NT68 2774 aa6.14□□□□□ -1.43
VPS39-201ENST00000318006 TGP01266 2768 aa6.1□□□□□ -1.43
VPS39-201ENST00000318006 XP32Q5T750 250 aa6.04□□□□□ -1.44
VPS39-201ENST00000318006 KRTAP13-3Q3SY46 172 aa6□□□□□ -1.45
VPS39-201ENST00000318006 KRTAP10-8P60410 259 aa5.99□□□□□ -1.45
VPS39-201ENST00000318006 AKAP9Q99996 3911 aa5.99□□□□□ -1.45
VPS39-201ENST00000318006 TPRXLQ17RH7 258 aa5.92□□□□□ -1.46
VPS39-201ENST00000318006 A0A1B0GVY2 172 aa5.88□□□□□ -1.47
VPS39-201ENST00000318006 HUWE1Q7Z6Z7 4374 aaKnown RBP5.83□□□□□ -1.48
VPS39-201ENST00000318006 FBN3Q75N90 2809 aa5.8□□□□□ -1.48
VPS39-201ENST00000318006 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
VPS39-201ENST00000318006 MEGF8Q7Z7M0 2845 aa5.78□□□□□ -1.48
VPS39-201ENST00000318006 SRRM2Q9UQ35 2752 aaKnown RBP5.74□□□□□ -1.49
VPS39-201ENST00000318006 KRTAP12-1P59990 96 aa5.7□□□□□ -1.5
VPS39-201ENST00000318006 COL7A1Q02388 2944 aa5.7□□□□□ -1.5
VPS39-201ENST00000318006 KRTAP13-4Q3LI77 160 aa5.66□□□□□ -1.5
VPS39-201ENST00000318006 DNAH9Q9NYC9 4486 aa5.65□□□□□ -1.5
VPS39-201ENST00000318006 CSMD3Q7Z407 3707 aa5.64□□□□□ -1.51
VPS39-201ENST00000318006 KRTAP3-1Q9BYR8 98 aa5.64□□□□□ -1.51
VPS39-201ENST00000318006 KRTAP10-10P60014 251 aa5.62□□□□□ -1.51
VPS39-201ENST00000318006 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
VPS39-201ENST00000318006 KRTAP10-6P60371 365 aaPredicted RBP5.54□□□□□ -1.52
VPS39-201ENST00000318006 PLECQ15149 4684 aaKnown RBP5.54□□□□□ -1.52
VPS39-201ENST00000318006 PRO2289Q9P1D8 64 aa5.53□□□□□ -1.52
VPS39-201ENST00000318006 DNHD1Q96M86 4753 aa5.48□□□□□ -1.53
VPS39-201ENST00000318006 DNAH10Q8IVF4 4471 aa5.46□□□□□ -1.54
VPS39-201ENST00000318006 DNAH1Q9P2D7 4330 aa5.44□□□□□ -1.54
VPS39-201ENST00000318006 STARD9Q9P2P6 4700 aa5.41□□□□□ -1.54
VPS39-201ENST00000318006 MT1HL1P0DM35 61 aa5.4□□□□□ -1.54
VPS39-201ENST00000318006 ANK2Q01484 3957 aa5.4□□□□□ -1.55
VPS39-201ENST00000318006 ALMS1Q8TCU4 4167 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms