RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 FRAS1Q86XX4 4008 aa10.39□□□□□ -0.75
SCAMP4-201ENST00000316097 KTN1-AS1Q86SY8 53 aa10.36□□□□□ -0.75
SCAMP4-201ENST00000316097 ALMS1Q8TCU4 4167 aa10.36□□□□□ -0.75
SCAMP4-201ENST00000316097 SPAG11AQ6PDA7 123 aa10.36□□□□□ -0.75
SCAMP4-201ENST00000316097 ATP11AUNQ6ZP68 121 aa10.36□□□□□ -0.75
SCAMP4-201ENST00000316097 DNAH11Q96DT5 4516 aa10.36□□□□□ -0.75
SCAMP4-201ENST00000316097 DNAH8Q96JB1 4490 aa10.35□□□□□ -0.75
SCAMP4-201ENST00000316097 IGLV9-49A0A0B4J1Y8 123 aa10.34□□□□□ -0.75
SCAMP4-201ENST00000316097 Q96NJ1 140 aa10.34□□□□□ -0.75
SCAMP4-201ENST00000316097 DNAH5Q8TE73 4624 aa10.34□□□□□ -0.75
SCAMP4-201ENST00000316097 FAT2Q9NYQ8 4349 aa10.34□□□□□ -0.75
SCAMP4-201ENST00000316097 TP53AIP1Q9HCN2 124 aa10.34□□□□□ -0.75
SCAMP4-201ENST00000316097 NDUFS5O43920 106 aa10.33□□□□□ -0.76
SCAMP4-201ENST00000316097 MOBPQ13875 183 aa10.32□□□□□ -0.76
SCAMP4-201ENST00000316097 C8orf17Q9NRJ1 99 aa10.32□□□□□ -0.76
SCAMP4-201ENST00000316097 ASB16-AS1Q495Z4 193 aa10.31□□□□□ -0.76
SCAMP4-201ENST00000316097 SACSQ9NZJ4 4579 aa10.31□□□□□ -0.76
SCAMP4-201ENST00000316097 CDC42SE1Q9NRR8 79 aa10.3□□□□□ -0.76
SCAMP4-201ENST00000316097 LINC01558Q9Y6Z2 57 aa10.3□□□□□ -0.76
SCAMP4-201ENST00000316097 PKD1P98161 4303 aa10.3□□□□□ -0.76
SCAMP4-201ENST00000316097 IGHV6-1A0A0B4J1U7 121 aa10.29□□□□□ -0.76
SCAMP4-201ENST00000316097 A6NN06 94 aa10.28□□□□□ -0.76
SCAMP4-201ENST00000316097 KRTAP13-1Q8IUC0 172 aa10.28□□□□□ -0.76
SCAMP4-201ENST00000316097 HRES1P13985 223 aa10.26□□□□□ -0.77
SCAMP4-201ENST00000316097 PLAC8Q9NZF1 115 aa10.26□□□□□ -0.77
SCAMP4-201ENST00000316097 PSORS1C2Q9UIG4 136 aa10.26□□□□□ -0.77
SCAMP4-201ENST00000316097 RBM12B-AS1Q9P1G2 102 aa10.24□□□□□ -0.77
SCAMP4-201ENST00000316097 A0A1B0GVX0 72 aa10.24□□□□□ -0.77
SCAMP4-201ENST00000316097 KRTAP10-1P60331 282 aa10.23□□□□□ -0.77
SCAMP4-201ENST00000316097 SPINK7P58062 85 aa10.22□□□□□ -0.77
SCAMP4-201ENST00000316097 CIRBP-AS1Q8TBR5 109 aa10.22□□□□□ -0.77
SCAMP4-201ENST00000316097 MRPL34Q9BQ48 92 aaKnown RBP10.21□□□□□ -0.77
SCAMP4-201ENST00000316097 CDK2AP2O75956 126 aa10.21□□□□□ -0.78
SCAMP4-201ENST00000316097 KMT2CQ8NEZ4 4911 aaKnown RBP10.2□□□□□ -0.78
SCAMP4-201ENST00000316097 A0A087X002 238 aa10.19□□□□□ -0.78
SCAMP4-201ENST00000316097 NOTCH2NLQ7Z3S9 236 aa10.19□□□□□ -0.78
SCAMP4-201ENST00000316097 PKHD1P08F94 4074 aa10.18□□□□□ -0.78
SCAMP4-201ENST00000316097 LRP1BQ9NZR2 4599 aa10.18□□□□□ -0.78
SCAMP4-201ENST00000316097 ANAPC11Q9NYG5 84 aa10.18□□□□□ -0.78
SCAMP4-201ENST00000316097 LINC00483Q53H64 154 aa10.15□□□□□ -0.78
SCAMP4-201ENST00000316097 PRR26Q8N8Z3 221 aa10.14□□□□□ -0.79
SCAMP4-201ENST00000316097 C7orf65Q6ZTY9 151 aa10.13□□□□□ -0.79
SCAMP4-201ENST00000316097 RYR2Q92736 4967 aa10.1□□□□□ -0.79
SCAMP4-201ENST00000316097 ZNF861PO60384 105 aa10.1□□□□□ -0.79
SCAMP4-201ENST00000316097 Q6ZSA8 131 aa10.1□□□□□ -0.79
SCAMP4-201ENST00000316097 Q5W150 140 aa10.09□□□□□ -0.79
SCAMP4-201ENST00000316097 SPINK6Q6UWN8 80 aa10.09□□□□□ -0.79
SCAMP4-201ENST00000316097 ZNF706Q9Y5V0 76 aaPredicted RBP10.09□□□□□ -0.79
SCAMP4-201ENST00000316097 IGLV7-43P04211 117 aa10.07□□□□□ -0.8
SCAMP4-201ENST00000316097 KRTAP13-3Q3SY46 172 aa10.02□□□□□ -0.8
SCAMP4-201ENST00000316097 ACYP2P14621 99 aa10□□□□□ -0.81
SCAMP4-201ENST00000316097 VPS13BQ7Z7G8 4022 aa10□□□□□ -0.81
SCAMP4-201ENST00000316097 DYNC1H1Q14204 4646 aaKnown RBP10□□□□□ -0.81
SCAMP4-201ENST00000316097 A0A1B0GVY2 172 aa9.96□□□□□ -0.81
SCAMP4-201ENST00000316097 SMR3BP02814 79 aaPredicted RBP9.96□□□□□ -0.81
SCAMP4-201ENST00000316097 RYR3Q15413 4870 aa9.95□□□□□ -0.82
SCAMP4-201ENST00000316097 LINC00313P59037 77 aa9.93□□□□□ -0.82
SCAMP4-201ENST00000316097 DMAC1Q96GE9 116 aa9.92□□□□□ -0.82
SCAMP4-201ENST00000316097 PRAC1Q96KF2 57 aa9.91□□□□□ -0.82
SCAMP4-201ENST00000316097 RETNLBQ9BQ08 111 aa9.91□□□□□ -0.82
SCAMP4-201ENST00000316097 A0A1B0GU69 56 aa9.89□□□□□ -0.83
SCAMP4-201ENST00000316097 FAT1Q14517 4588 aa9.88□□□□□ -0.83
SCAMP4-201ENST00000316097 C8orf87E5RJ46 101 aa9.87□□□□□ -0.83
SCAMP4-201ENST00000316097 ADM2Q7Z4H4 148 aa9.86□□□□□ -0.83
SCAMP4-201ENST00000316097 APOBP04114 4563 aaKnown RBP9.85□□□□□ -0.83
SCAMP4-201ENST00000316097 FAM229AH3BQW9 127 aa9.82□□□□□ -0.84
SCAMP4-201ENST00000316097 KRTAP13-2Q52LG2 175 aa9.82□□□□□ -0.84
SCAMP4-201ENST00000316097 KRTAP1-4P0C5Y4 121 aa9.8□□□□□ -0.84
SCAMP4-201ENST00000316097 IGKV2-30P06310 120 aa9.79□□□□□ -0.84
SCAMP4-201ENST00000316097 SPATA8Q6RVD6 105 aa9.79□□□□□ -0.84
SCAMP4-201ENST00000316097 PLA2G1BP04054 148 aaKnown RBP9.79□□□□□ -0.84
SCAMP4-201ENST00000316097 MIR22HGQ0VDD5 57 aa9.76□□□□□ -0.85
SCAMP4-201ENST00000316097 SSBP3-AS1Q7Z2R9 100 aa9.76□□□□□ -0.85
SCAMP4-201ENST00000316097 UQCR11O14957 56 aa9.74□□□□□ -0.85
SCAMP4-201ENST00000316097 IGKV2D-30A0A075B6S6 120 aa9.7□□□□□ -0.86
SCAMP4-201ENST00000316097 KRTAP10-4P60372 401 aaPredicted RBP9.69□□□□□ -0.86
SCAMP4-201ENST00000316097 KRTAP16-1A8MUX0 517 aa9.66□□□□□ -0.86
SCAMP4-201ENST00000316097 LINC01554Q52M75 96 aa9.66□□□□□ -0.86
SCAMP4-201ENST00000316097 TYMSOSQ8TAI1 123 aa9.65□□□□□ -0.87
SCAMP4-201ENST00000316097 EPPK1P58107 5090 aaKnown RBP9.62□□□□□ -0.87
SCAMP4-201ENST00000316097 C4orf48Q5BLP8 95 aa9.6□□□□□ -0.87
SCAMP4-201ENST00000316097 HSPG2P98160 4391 aa9.6□□□□□ -0.87
SCAMP4-201ENST00000316097 KIAA1109Q2LD37 5005 aa9.59□□□□□ -0.87
SCAMP4-201ENST00000316097 KRTAP17-1Q9BYP8 105 aa9.59□□□□□ -0.87
SCAMP4-201ENST00000316097 SPINK1P00995 79 aa9.57□□□□□ -0.88
SCAMP4-201ENST00000316097 CSAG1Q6PB30 78 aa9.55□□□□□ -0.88
SCAMP4-201ENST00000316097 RYR1P21817 5038 aa9.53□□□□□ -0.88
SCAMP4-201ENST00000316097 LRP1Q07954 4544 aaKnown RBP9.53□□□□□ -0.88
SCAMP4-201ENST00000316097 Q5VSD8 79 aa9.5□□□□□ -0.89
SCAMP4-201ENST00000316097 Q8N1X5 172 aa9.5□□□□□ -0.89
SCAMP4-201ENST00000316097 LINC00304Q8N9R0 145 aa9.5□□□□□ -0.89
SCAMP4-201ENST00000316097 PKHD1L1Q86WI1 4243 aa9.48□□□□□ -0.89
SCAMP4-201ENST00000316097 FLG2Q5D862 2391 aaPredicted RBP9.43□□□□□ -0.9
SCAMP4-201ENST00000316097 MYCBP2O75592 4640 aa9.38□□□□□ -0.91
SCAMP4-201ENST00000316097 H0YAA0 97 aa9.36□□□□□ -0.91
SCAMP4-201ENST00000316097 TNXBP22105 4242 aa9.33□□□□□ -0.92
SCAMP4-201ENST00000316097 A8MUU9 505 aa9.31□□□□□ -0.92
SCAMP4-201ENST00000316097 H3BS24 57 aa9.28□□□□□ -0.92
SCAMP4-201ENST00000316097 RPS29P62273 56 aaKnown RBP9.28□□□□□ -0.92
SCAMP4-201ENST00000316097 C9orf92A6NGG3 77 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms