RNA–Protein interactions for RNA: ENST00000299162.9

FOXN4-201, Transcript of forkhead box N4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXN4, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4-201ENST00000299162 LINC01554Q52M75 96 aa6.17□□□□□ -1.42
FOXN4-201ENST00000299162 COA5Q86WW8 74 aa6.17□□□□□ -1.42
FOXN4-201ENST00000299162 DNAH2Q9P225 4427 aa6.16□□□□□ -1.42
FOXN4-201ENST00000299162 SPINK7P58062 85 aa6.14□□□□□ -1.43
FOXN4-201ENST00000299162 SPINK6Q6UWN8 80 aa6.14□□□□□ -1.43
FOXN4-201ENST00000299162 DNAH6Q9C0G6 4158 aa6.12□□□□□ -1.43
FOXN4-201ENST00000299162 KRTAP10-2P60368 255 aa6.12□□□□□ -1.43
FOXN4-201ENST00000299162 LOC101927531A0A1B0GV80 90 aa6.12□□□□□ -1.43
FOXN4-201ENST00000299162 HECTD4Q9Y4D8 3996 aa6.12□□□□□ -1.43
FOXN4-201ENST00000299162 DYNC2H1Q8NCM8 4307 aaKnown RBP6.12□□□□□ -1.43
FOXN4-201ENST00000299162 IGHV6-1A0A0B4J1U7 121 aa6.12□□□□□ -1.43
FOXN4-201ENST00000299162 Q6ZR54 194 aa6.11□□□□□ -1.43
FOXN4-201ENST00000299162 RETNLBQ9BQ08 111 aa6.1□□□□□ -1.43
FOXN4-201ENST00000299162 CIRBP-AS1Q8TBR5 109 aa6.1□□□□□ -1.43
FOXN4-201ENST00000299162 DNAH11Q96DT5 4516 aa6.08□□□□□ -1.44
FOXN4-201ENST00000299162 CDK2AP2O75956 126 aa6.08□□□□□ -1.44
FOXN4-201ENST00000299162 ZNF706Q9Y5V0 76 aaPredicted RBP6.08□□□□□ -1.44
FOXN4-201ENST00000299162 KRTAP13-1Q8IUC0 172 aa6.07□□□□□ -1.44
FOXN4-201ENST00000299162 DNAH17Q9UFH2 4485 aa6.07□□□□□ -1.44
FOXN4-201ENST00000299162 A0A1B0GW54 56 aa6.07□□□□□ -1.44
FOXN4-201ENST00000299162 IGLV8-61A0A075B6I0 122 aa6.06□□□□□ -1.44
FOXN4-201ENST00000299162 ZNF861PO60384 105 aa6.06□□□□□ -1.44
FOXN4-201ENST00000299162 HYDINQ4G0P3 5121 aa6.05□□□□□ -1.44
FOXN4-201ENST00000299162 A8MWP4 228 aa6.05□□□□□ -1.44
FOXN4-201ENST00000299162 SPRR1BP22528 89 aa6.05□□□□□ -1.44
FOXN4-201ENST00000299162 DNAH8Q96JB1 4490 aa6.05□□□□□ -1.44
FOXN4-201ENST00000299162 KRTAP29-1A8MX34 341 aaPredicted RBP6.04□□□□□ -1.44
FOXN4-201ENST00000299162 LINC00472Q9H8W2 130 aa6.04□□□□□ -1.44
FOXN4-201ENST00000299162 PLAC8Q9NZF1 115 aa6.04□□□□□ -1.44
FOXN4-201ENST00000299162 WWC2-AS2Q96NR7 200 aa6.03□□□□□ -1.44
FOXN4-201ENST00000299162 SPANXA2-OT1Q8N9U9 137 aa6.03□□□□□ -1.44
FOXN4-201ENST00000299162 IGLV7-43P04211 117 aa6.01□□□□□ -1.45
FOXN4-201ENST00000299162 KRTAP10-1P60331 282 aa6.01□□□□□ -1.45
FOXN4-201ENST00000299162 A0A087X002 238 aa6□□□□□ -1.45
FOXN4-201ENST00000299162 NOTCH2NLQ7Z3S9 236 aa6□□□□□ -1.45
FOXN4-201ENST00000299162 MMP24-AS1A0A0U1RRL7 71 aa5.99□□□□□ -1.45
FOXN4-201ENST00000299162 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
FOXN4-201ENST00000299162 IGLV7-46A0A075B6I9 117 aa5.99□□□□□ -1.45
FOXN4-201ENST00000299162 PLA2G1BP04054 148 aaKnown RBP5.98□□□□□ -1.45
FOXN4-201ENST00000299162 HRES1P13985 223 aa5.98□□□□□ -1.45
FOXN4-201ENST00000299162 LRP1BQ9NZR2 4599 aa5.97□□□□□ -1.45
FOXN4-201ENST00000299162 H3BPC8 53 aa5.97□□□□□ -1.45
FOXN4-201ENST00000299162 FAM229AH3BQW9 127 aa5.97□□□□□ -1.45
FOXN4-201ENST00000299162 SMR3BP02814 79 aaPredicted RBP5.97□□□□□ -1.45
FOXN4-201ENST00000299162 DNAH5Q8TE73 4624 aa5.97□□□□□ -1.45
FOXN4-201ENST00000299162 CSAG1Q6PB30 78 aa5.96□□□□□ -1.46
FOXN4-201ENST00000299162 Q96NJ1 140 aa5.96□□□□□ -1.46
FOXN4-201ENST00000299162 LINC00483Q53H64 154 aa5.95□□□□□ -1.46
FOXN4-201ENST00000299162 C8orf17Q9NRJ1 99 aa5.94□□□□□ -1.46
FOXN4-201ENST00000299162 FLG2Q5D862 2391 aaPredicted RBP5.94□□□□□ -1.46
FOXN4-201ENST00000299162 PKHD1P08F94 4074 aa5.93□□□□□ -1.46
FOXN4-201ENST00000299162 A0A1B0GVX0 72 aa5.92□□□□□ -1.46
FOXN4-201ENST00000299162 SPINK1P00995 79 aa5.9□□□□□ -1.46
FOXN4-201ENST00000299162 ALMS1Q8TCU4 4167 aa5.9□□□□□ -1.47
FOXN4-201ENST00000299162 VPS13BQ7Z7G8 4022 aa5.89□□□□□ -1.47
FOXN4-201ENST00000299162 MRPL34Q9BQ48 92 aaKnown RBP5.88□□□□□ -1.47
FOXN4-201ENST00000299162 TP53AIP1Q9HCN2 124 aa5.88□□□□□ -1.47
FOXN4-201ENST00000299162 KRTAP13-2Q52LG2 175 aa5.87□□□□□ -1.47
FOXN4-201ENST00000299162 FAT2Q9NYQ8 4349 aa5.87□□□□□ -1.47
FOXN4-201ENST00000299162 A0A1B0GU69 56 aa5.87□□□□□ -1.47
FOXN4-201ENST00000299162 Q5W150 140 aa5.86□□□□□ -1.47
FOXN4-201ENST00000299162 DMBT1Q9UGM3 2413 aaPredicted RBP5.86□□□□□ -1.47
FOXN4-201ENST00000299162 FAT1Q14517 4588 aa5.84□□□□□ -1.47
FOXN4-201ENST00000299162 IGKV2D-30A0A075B6S6 120 aa5.84□□□□□ -1.48
FOXN4-201ENST00000299162 IGKV2-30P06310 120 aa5.84□□□□□ -1.48
FOXN4-201ENST00000299162 PKD1P98161 4303 aa5.83□□□□□ -1.48
FOXN4-201ENST00000299162 TYMSOSQ8TAI1 123 aa5.82□□□□□ -1.48
FOXN4-201ENST00000299162 ACYP2P14621 99 aa5.82□□□□□ -1.48
FOXN4-201ENST00000299162 SSBP3-AS1Q7Z2R9 100 aa5.82□□□□□ -1.48
FOXN4-201ENST00000299162 Q6ZSA8 131 aa5.81□□□□□ -1.48
FOXN4-201ENST00000299162 SACSQ9NZJ4 4579 aa5.8□□□□□ -1.48
FOXN4-201ENST00000299162 KRTAP1-4P0C5Y4 121 aa5.78□□□□□ -1.48
FOXN4-201ENST00000299162 MIR22HGQ0VDD5 57 aa5.78□□□□□ -1.48
FOXN4-201ENST00000299162 ROMO1P60602 79 aa5.77□□□□□ -1.49
FOXN4-201ENST00000299162 KMT2CQ8NEZ4 4911 aaKnown RBP5.76□□□□□ -1.49
FOXN4-201ENST00000299162 ASB16-AS1Q495Z4 193 aa5.76□□□□□ -1.49
FOXN4-201ENST00000299162 DYNC1H1Q14204 4646 aaKnown RBP5.74□□□□□ -1.49
FOXN4-201ENST00000299162 C9orf92A6NGG3 77 aa5.73□□□□□ -1.49
FOXN4-201ENST00000299162 SPATA8Q6RVD6 105 aa5.73□□□□□ -1.49
FOXN4-201ENST00000299162 UQCR11O14957 56 aa5.73□□□□□ -1.49
FOXN4-201ENST00000299162 P0C880 135 aa5.73□□□□□ -1.49
FOXN4-201ENST00000299162 CRIPTQ9P021 101 aa5.71□□□□□ -1.5
FOXN4-201ENST00000299162 Q8N1X5 172 aa5.71□□□□□ -1.5
FOXN4-201ENST00000299162 LINC00304Q8N9R0 145 aa5.7□□□□□ -1.5
FOXN4-201ENST00000299162 KRTAP21-3Q3LHN1 58 aa5.66□□□□□ -1.5
FOXN4-201ENST00000299162 DMAC1Q96GE9 116 aa5.65□□□□□ -1.51
FOXN4-201ENST00000299162 KRTAP25-1Q3LHN0 102 aa5.63□□□□□ -1.51
FOXN4-201ENST00000299162 APOBP04114 4563 aaKnown RBP5.62□□□□□ -1.51
FOXN4-201ENST00000299162 LRP1Q07954 4544 aaKnown RBP5.62□□□□□ -1.51
FOXN4-201ENST00000299162 KRTAP13-3Q3SY46 172 aa5.62□□□□□ -1.51
FOXN4-201ENST00000299162 KRTAP16-1A8MUX0 517 aa5.61□□□□□ -1.51
FOXN4-201ENST00000299162 A0A1B0GVY2 172 aa5.6□□□□□ -1.51
FOXN4-201ENST00000299162 RYR2Q92736 4967 aa5.59□□□□□ -1.51
FOXN4-201ENST00000299162 A8MUU9 505 aa5.58□□□□□ -1.52
FOXN4-201ENST00000299162 MYCBP2O75592 4640 aa5.57□□□□□ -1.52
FOXN4-201ENST00000299162 NDUFAF8A1L188 74 aa5.54□□□□□ -1.52
FOXN4-201ENST00000299162 RYR3Q15413 4870 aa5.53□□□□□ -1.52
FOXN4-201ENST00000299162 Q5VSD8 79 aa5.52□□□□□ -1.53
FOXN4-201ENST00000299162 KRTAP10-4P60372 401 aaPredicted RBP5.52□□□□□ -1.53
FOXN4-201ENST00000299162 KIAA1109Q2LD37 5005 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms