RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SPRR1BP22528 89 aa8.1□□□□□ -1.11
SKA3-201ENST00000298260 ASB16-AS1Q495Z4 193 aa8.1□□□□□ -1.11
SKA3-201ENST00000298260 TP53AIP1Q9HCN2 124 aa8.09□□□□□ -1.11
SKA3-201ENST00000298260 FBN3Q75N90 2809 aa8.09□□□□□ -1.11
SKA3-201ENST00000298260 SPINK6Q6UWN8 80 aa8.07□□□□□ -1.12
SKA3-201ENST00000298260 A0A1B0GVX0 72 aa8.06□□□□□ -1.12
SKA3-201ENST00000298260 RETNLBQ9BQ08 111 aa8.06□□□□□ -1.12
SKA3-201ENST00000298260 MRPL34Q9BQ48 92 aaKnown RBP8.06□□□□□ -1.12
SKA3-201ENST00000298260 DNAH7Q8WXX0 4024 aa8.04□□□□□ -1.12
SKA3-201ENST00000298260 CDK2AP2O75956 126 aa8.02□□□□□ -1.13
SKA3-201ENST00000298260 FRAS1Q86XX4 4008 aa8.01□□□□□ -1.13
SKA3-201ENST00000298260 H3BS24 57 aa8.01□□□□□ -1.13
SKA3-201ENST00000298260 LINC01554Q52M75 96 aa8.01□□□□□ -1.13
SKA3-201ENST00000298260 PLECQ15149 4684 aaKnown RBP7.97□□□□□ -1.13
SKA3-201ENST00000298260 KRTAP13-1Q8IUC0 172 aa7.97□□□□□ -1.13
SKA3-201ENST00000298260 A0A1B0GU69 56 aa7.96□□□□□ -1.13
SKA3-201ENST00000298260 PLA2G1BP04054 148 aaKnown RBP7.96□□□□□ -1.13
SKA3-201ENST00000298260 STARD9Q9P2P6 4700 aa7.95□□□□□ -1.14
SKA3-201ENST00000298260 ACYP2P14621 99 aa7.94□□□□□ -1.14
SKA3-201ENST00000298260 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.94□□□□□ -1.14
SKA3-201ENST00000298260 ALMS1Q8TCU4 4167 aa7.93□□□□□ -1.14
SKA3-201ENST00000298260 RTL8CO15255 209 aa7.93□□□□□ -1.14
SKA3-201ENST00000298260 CSAG1Q6PB30 78 aa7.93□□□□□ -1.14
SKA3-201ENST00000298260 KRTAP13-3Q3SY46 172 aa7.93□□□□□ -1.14
SKA3-201ENST00000298260 WWC2-AS2Q96NR7 200 aa7.92□□□□□ -1.14
SKA3-201ENST00000298260 UBE2DNLQ8IWF7 75 aa7.9□□□□□ -1.14
SKA3-201ENST00000298260 MIR22HGQ0VDD5 57 aa7.89□□□□□ -1.15
SKA3-201ENST00000298260 SPATA8Q6RVD6 105 aa7.88□□□□□ -1.15
SKA3-201ENST00000298260 DNAH8Q96JB1 4490 aa7.86□□□□□ -1.15
SKA3-201ENST00000298260 DMAC1Q96GE9 116 aa7.86□□□□□ -1.15
SKA3-201ENST00000298260 CIRBP-AS1Q8TBR5 109 aa7.85□□□□□ -1.15
SKA3-201ENST00000298260 KMT2AQ03164 3969 aa7.85□□□□□ -1.15
SKA3-201ENST00000298260 PSORS1C2Q9UIG4 136 aa7.84□□□□□ -1.16
SKA3-201ENST00000298260 FLG2Q5D862 2391 aaPredicted RBP7.83□□□□□ -1.16
SKA3-201ENST00000298260 LINC00483Q53H64 154 aa7.83□□□□□ -1.16
SKA3-201ENST00000298260 UQCR11O14957 56 aa7.82□□□□□ -1.16
SKA3-201ENST00000298260 SPINK1P00995 79 aa7.8□□□□□ -1.16
SKA3-201ENST00000298260 C14orf177Q52M58 125 aa7.79□□□□□ -1.16
SKA3-201ENST00000298260 SPACA4Q8TDM5 124 aa7.78□□□□□ -1.16
SKA3-201ENST00000298260 IGKV2D-30A0A075B6S6 120 aa7.77□□□□□ -1.17
SKA3-201ENST00000298260 IGKV2-30P06310 120 aa7.77□□□□□ -1.17
SKA3-201ENST00000298260 DNAH17Q9UFH2 4485 aa7.75□□□□□ -1.17
SKA3-201ENST00000298260 IGLV5-52A0A0A0MRZ9 124 aa7.73□□□□□ -1.17
SKA3-201ENST00000298260 ZNF861PO60384 105 aa7.73□□□□□ -1.17
SKA3-201ENST00000298260 APLNQ9ULZ1 77 aa7.73□□□□□ -1.17
SKA3-201ENST00000298260 ZNF706Q9Y5V0 76 aaPredicted RBP7.72□□□□□ -1.17
SKA3-201ENST00000298260 Q6ZRN7 208 aaPredicted RBP7.7□□□□□ -1.18
SKA3-201ENST00000298260 DYNC2H1Q8NCM8 4307 aaKnown RBP7.7□□□□□ -1.18
SKA3-201ENST00000298260 VPS13DQ5THJ4 4388 aa7.7□□□□□ -1.18
SKA3-201ENST00000298260 HECTD4Q9Y4D8 3996 aa7.69□□□□□ -1.18
SKA3-201ENST00000298260 NBDYA0A0U1RRE5 68 aa7.69□□□□□ -1.18
SKA3-201ENST00000298260 DNAH2Q9P225 4427 aa7.69□□□□□ -1.18
SKA3-201ENST00000298260 FAM229AH3BQW9 127 aa7.68□□□□□ -1.18
SKA3-201ENST00000298260 C1orf134Q5TEV5 83 aa7.68□□□□□ -1.18
SKA3-201ENST00000298260 Q8N1X5 172 aa7.67□□□□□ -1.18
SKA3-201ENST00000298260 CRIPTQ9P021 101 aa7.67□□□□□ -1.18
SKA3-201ENST00000298260 HYDINQ4G0P3 5121 aa7.67□□□□□ -1.18
SKA3-201ENST00000298260 IGLV7-43P04211 117 aa7.63□□□□□ -1.19
SKA3-201ENST00000298260 NUPR2A6NF83 97 aa7.62□□□□□ -1.19
SKA3-201ENST00000298260 LY6G6CO95867 125 aa7.62□□□□□ -1.19
SKA3-201ENST00000298260 A0A087WTM6 91 aa7.61□□□□□ -1.19
SKA3-201ENST00000298260 KRTAP16-1A8MUX0 517 aa7.58□□□□□ -1.2
SKA3-201ENST00000298260 H0YAA0 97 aa7.58□□□□□ -1.2
SKA3-201ENST00000298260 Q6ZSA8 131 aa7.57□□□□□ -1.2
SKA3-201ENST00000298260 DNAH6Q9C0G6 4158 aa7.56□□□□□ -1.2
SKA3-201ENST00000298260 TYMSOSQ8TAI1 123 aa7.56□□□□□ -1.2
SKA3-201ENST00000298260 LINC00304Q8N9R0 145 aa7.56□□□□□ -1.2
SKA3-201ENST00000298260 KRTAP13-2Q52LG2 175 aa7.53□□□□□ -1.2
SKA3-201ENST00000298260 A8MUU9 505 aa7.53□□□□□ -1.2
SKA3-201ENST00000298260 KRTAP25-1Q3LHN0 102 aa7.53□□□□□ -1.2
SKA3-201ENST00000298260 KMT2CQ8NEZ4 4911 aaKnown RBP7.53□□□□□ -1.2
SKA3-201ENST00000298260 ROMO1P60602 79 aa7.52□□□□□ -1.21
SKA3-201ENST00000298260 DNAH11Q96DT5 4516 aa7.5□□□□□ -1.21
SKA3-201ENST00000298260 DMBT1Q9UGM3 2413 aaPredicted RBP7.5□□□□□ -1.21
SKA3-201ENST00000298260 SSBP3-AS1Q7Z2R9 100 aa7.49□□□□□ -1.21
SKA3-201ENST00000298260 SACSQ9NZJ4 4579 aa7.48□□□□□ -1.21
SKA3-201ENST00000298260 PKHD1P08F94 4074 aa7.46□□□□□ -1.22
SKA3-201ENST00000298260 P0C880 135 aa7.42□□□□□ -1.22
SKA3-201ENST00000298260 LRP1BQ9NZR2 4599 aa7.42□□□□□ -1.22
SKA3-201ENST00000298260 A0A1B0GU33 70 aa7.41□□□□□ -1.22
SKA3-201ENST00000298260 DNAH5Q8TE73 4624 aa7.41□□□□□ -1.22
SKA3-201ENST00000298260 FAT2Q9NYQ8 4349 aa7.39□□□□□ -1.23
SKA3-201ENST00000298260 KRTAP10-2P60368 255 aa7.38□□□□□ -1.23
SKA3-201ENST00000298260 PKD1P98161 4303 aa7.34□□□□□ -1.23
SKA3-201ENST00000298260 KRTAP3-1Q9BYR8 98 aa7.34□□□□□ -1.23
SKA3-201ENST00000298260 H1FX-AS1Q4G0G2 97 aa7.33□□□□□ -1.24
SKA3-201ENST00000298260 RYR3Q15413 4870 aa7.31□□□□□ -1.24
SKA3-201ENST00000298260 C9orf92A6NGG3 77 aa7.3□□□□□ -1.24
SKA3-201ENST00000298260 KRTAP1-4P0C5Y4 121 aa7.3□□□□□ -1.24
SKA3-201ENST00000298260 RYR2Q92736 4967 aa7.28□□□□□ -1.24
SKA3-201ENST00000298260 VPS13BQ7Z7G8 4022 aa7.28□□□□□ -1.24
SKA3-201ENST00000298260 COX6B2Q6YFQ2 88 aa7.24□□□□□ -1.25
SKA3-201ENST00000298260 KRTAP10-1P60331 282 aa7.23□□□□□ -1.25
SKA3-201ENST00000298260 FAT1Q14517 4588 aa7.23□□□□□ -1.25
SKA3-201ENST00000298260 C10orf95Q9H7T3 257 aa7.23□□□□□ -1.25
SKA3-201ENST00000298260 DYNC1H1Q14204 4646 aaKnown RBP7.22□□□□□ -1.25
SKA3-201ENST00000298260 A0A0D9SG42 100 aa7.22□□□□□ -1.25
SKA3-201ENST00000298260 SPINT4Q6UDR6 99 aa7.2□□□□□ -1.26
SKA3-201ENST00000298260 TPRXLQ17RH7 258 aa7.19□□□□□ -1.26
SKA3-201ENST00000298260 K7ERS5 55 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms