RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DNAH5Q8TE73 4624 aa9.82□□□□□ -0.84
VPS54-201ENST00000272322 A8MUN3 132 aa9.81□□□□□ -0.84
VPS54-201ENST00000272322 KRTAP10-1P60331 282 aa9.8□□□□□ -0.84
VPS54-201ENST00000272322 CD164Q04900 197 aa9.77□□□□□ -0.84
VPS54-201ENST00000272322 MRPL34Q9BQ48 92 aaKnown RBP9.77□□□□□ -0.85
VPS54-201ENST00000272322 A8MU10 97 aa9.76□□□□□ -0.85
VPS54-201ENST00000272322 Q5W150 140 aa9.75□□□□□ -0.85
VPS54-201ENST00000272322 ALMS1Q8TCU4 4167 aa9.74□□□□□ -0.85
VPS54-201ENST00000272322 PRO0628Q9UI54 55 aa9.73□□□□□ -0.85
VPS54-201ENST00000272322 CYP4F30PQ9H0H9 118 aa9.72□□□□□ -0.85
VPS54-201ENST00000272322 SMR3BP02814 79 aaPredicted RBP9.71□□□□□ -0.85
VPS54-201ENST00000272322 COA5Q86WW8 74 aa9.71□□□□□ -0.85
VPS54-201ENST00000272322 PKHD1P08F94 4074 aa9.71□□□□□ -0.85
VPS54-201ENST00000272322 SPAG11AQ6PDA7 123 aa9.71□□□□□ -0.86
VPS54-201ENST00000272322 VPS13BQ7Z7G8 4022 aa9.7□□□□□ -0.86
VPS54-201ENST00000272322 PRR15LQ9BU68 103 aa9.7□□□□□ -0.86
VPS54-201ENST00000272322 FAT2Q9NYQ8 4349 aa9.68□□□□□ -0.86
VPS54-201ENST00000272322 KRTAP13-2Q52LG2 175 aa9.68□□□□□ -0.86
VPS54-201ENST00000272322 Q8N9P0 234 aaPredicted RBP9.67□□□□□ -0.86
VPS54-201ENST00000272322 CHKB-CPT1BH3BT56 60 aa9.66□□□□□ -0.86
VPS54-201ENST00000272322 TP53AIP1Q9HCN2 124 aa9.66□□□□□ -0.86
VPS54-201ENST00000272322 H3BPC8 53 aa9.64□□□□□ -0.87
VPS54-201ENST00000272322 PLA2G1BP04054 148 aaKnown RBP9.63□□□□□ -0.87
VPS54-201ENST00000272322 Q1T7F1 81 aa9.63□□□□□ -0.87
VPS54-201ENST00000272322 PRR26Q8N8Z3 221 aa9.62□□□□□ -0.87
VPS54-201ENST00000272322 IGLV7-46A0A075B6I9 117 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 SPANXA2-OT1Q8N9U9 137 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 FAT1Q14517 4588 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 LINC00313P59037 77 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 ASB16-AS1Q495Z4 193 aa9.61□□□□□ -0.87
VPS54-201ENST00000272322 SSBP3-AS1Q7Z2R9 100 aa9.59□□□□□ -0.87
VPS54-201ENST00000272322 C1orf195Q5TG92 126 aa9.58□□□□□ -0.88
VPS54-201ENST00000272322 SPTSSBQ8NFR3 76 aa9.58□□□□□ -0.88
VPS54-201ENST00000272322 IGKV2D-30A0A075B6S6 120 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 IGKV2-30P06310 120 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 Q5VV11 94 aa9.57□□□□□ -0.88
VPS54-201ENST00000272322 HRES1P13985 223 aa9.56□□□□□ -0.88
VPS54-201ENST00000272322 C4orf48Q5BLP8 95 aa9.56□□□□□ -0.88
VPS54-201ENST00000272322 PKD1P98161 4303 aa9.54□□□□□ -0.88
VPS54-201ENST00000272322 A6NED7 52 aa9.54□□□□□ -0.88
VPS54-201ENST00000272322 TYMSOSQ8TAI1 123 aa9.53□□□□□ -0.88
VPS54-201ENST00000272322 FLG2Q5D862 2391 aaPredicted RBP9.51□□□□□ -0.89
VPS54-201ENST00000272322 DMBT1Q9UGM3 2413 aaPredicted RBP9.51□□□□□ -0.89
VPS54-201ENST00000272322 KRTAP1-4P0C5Y4 121 aa9.5□□□□□ -0.89
VPS54-201ENST00000272322 Q6ZSA8 131 aa9.47□□□□□ -0.89
VPS54-201ENST00000272322 V9GYY9 64 aa9.47□□□□□ -0.89
VPS54-201ENST00000272322 LOC101927531A0A1B0GV80 90 aa9.46□□□□□ -0.89
VPS54-201ENST00000272322 LIMD2Q9BT23 127 aa9.46□□□□□ -0.9
VPS54-201ENST00000272322 SACSQ9NZJ4 4579 aa9.44□□□□□ -0.9
VPS54-201ENST00000272322 C9orf92A6NGG3 77 aa9.44□□□□□ -0.9
VPS54-201ENST00000272322 SPINK1P00995 79 aa9.42□□□□□ -0.9
VPS54-201ENST00000272322 PMAIP1Q13794 54 aa9.41□□□□□ -0.9
VPS54-201ENST00000272322 DYNC1H1Q14204 4646 aaKnown RBP9.4□□□□□ -0.9
VPS54-201ENST00000272322 C8orf87E5RJ46 101 aa9.4□□□□□ -0.9
VPS54-201ENST00000272322 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.91
VPS54-201ENST00000272322 FAM229AH3BQW9 127 aa9.39□□□□□ -0.91
VPS54-201ENST00000272322 SPINK7P58062 85 aa9.39□□□□□ -0.91
VPS54-201ENST00000272322 LCA10Q71F78 164 aa9.38□□□□□ -0.91
VPS54-201ENST00000272322 Q8N1X5 172 aa9.36□□□□□ -0.91
VPS54-201ENST00000272322 KMT2CQ8NEZ4 4911 aaKnown RBP9.35□□□□□ -0.91
VPS54-201ENST00000272322 ACYP2P14621 99 aa9.34□□□□□ -0.91
VPS54-201ENST00000272322 LINC00304Q8N9R0 145 aa9.33□□□□□ -0.92
VPS54-201ENST00000272322 KRTAP16-1A8MUX0 517 aa9.31□□□□□ -0.92
VPS54-201ENST00000272322 C7orf65Q6ZTY9 151 aa9.3□□□□□ -0.92
VPS54-201ENST00000272322 LINC01558Q9Y6Z2 57 aa9.28□□□□□ -0.92
VPS54-201ENST00000272322 Q75L30 129 aa9.28□□□□□ -0.92
VPS54-201ENST00000272322 MYCBP2O75592 4640 aa9.25□□□□□ -0.93
VPS54-201ENST00000272322 LRP1Q07954 4544 aaKnown RBP9.24□□□□□ -0.93
VPS54-201ENST00000272322 DMAC1Q96GE9 116 aa9.22□□□□□ -0.93
VPS54-201ENST00000272322 APOBP04114 4563 aaKnown RBP9.2□□□□□ -0.94
VPS54-201ENST00000272322 A0A1B0GU69 56 aa9.19□□□□□ -0.94
VPS54-201ENST00000272322 CDC42SE1Q9NRR8 79 aa9.14□□□□□ -0.95
VPS54-201ENST00000272322 ATP11AUNQ6ZP68 121 aa9.09□□□□□ -0.95
VPS54-201ENST00000272322 RYR2Q92736 4967 aa9.07□□□□□ -0.96
VPS54-201ENST00000272322 A0A1B0GVY2 172 aa9.04□□□□□ -0.96
VPS54-201ENST00000272322 RYR3Q15413 4870 aa9□□□□□ -0.97
VPS54-201ENST00000272322 KRTAP10-4P60372 401 aaPredicted RBP8.99□□□□□ -0.97
VPS54-201ENST00000272322 KIAA1109Q2LD37 5005 aa8.99□□□□□ -0.97
VPS54-201ENST00000272322 FAT3Q8TDW7 4589 aa8.98□□□□□ -0.97
VPS54-201ENST00000272322 A6NN06 94 aa8.97□□□□□ -0.97
VPS54-201ENST00000272322 PRAC1Q96KF2 57 aa8.97□□□□□ -0.97
VPS54-201ENST00000272322 PKHD1L1Q86WI1 4243 aa8.96□□□□□ -0.97
VPS54-201ENST00000272322 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.98
VPS54-201ENST00000272322 MIR22HGQ0VDD5 57 aa8.96□□□□□ -0.98
VPS54-201ENST00000272322 KRTAP21-3Q3LHN1 58 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 SEC61GP60059 68 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 KTN1-AS1Q86SY8 53 aa8.94□□□□□ -0.98
VPS54-201ENST00000272322 UQCR11O14957 56 aa8.93□□□□□ -0.98
VPS54-201ENST00000272322 HSPG2P98160 4391 aa8.91□□□□□ -0.98
VPS54-201ENST00000272322 Q5VSD8 79 aa8.9□□□□□ -0.99
VPS54-201ENST00000272322 KRTAP3-1Q9BYR8 98 aa8.9□□□□□ -0.99
VPS54-201ENST00000272322 A8MUU9 505 aa8.88□□□□□ -0.99
VPS54-201ENST00000272322 C20orf166-AS1Q96NR2 134 aa8.86□□□□□ -0.99
VPS54-201ENST00000272322 RPS29P62273 56 aaKnown RBP8.84□□□□□ -0.99
VPS54-201ENST00000272322 KRTAP17-1Q9BYP8 105 aa8.83□□□□□ -1
VPS54-201ENST00000272322 RBM12B-AS1Q9P1G2 102 aa8.82□□□□□ -1
VPS54-201ENST00000272322 SPATA8Q6RVD6 105 aa8.8□□□□□ -1
VPS54-201ENST00000272322 RYR1P21817 5038 aa8.79□□□□□ -1
VPS54-201ENST00000272322 TNXBP22105 4242 aa8.75□□□□□ -1.01
VPS54-201ENST00000272322 LPAP08519 4548 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms