RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 HECTD4Q9Y4D8 3996 aa16.34■□□□□ 0.21
CBX4-201ENST00000269397 DNAH8Q96JB1 4490 aa16.34■□□□□ 0.21
CBX4-201ENST00000269397 ZNF706Q9Y5V0 76 aaPredicted RBP16.32■□□□□ 0.2
CBX4-201ENST00000269397 IGLV5-52A0A0A0MRZ9 124 aa16.32■□□□□ 0.2
CBX4-201ENST00000269397 A0A087WTM6 91 aa16.31■□□□□ 0.2
CBX4-201ENST00000269397 STARD9Q9P2P6 4700 aa16.28■□□□□ 0.2
CBX4-201ENST00000269397 Q5W150 140 aa16.27■□□□□ 0.19
CBX4-201ENST00000269397 LINC01558Q9Y6Z2 57 aa16.27■□□□□ 0.19
CBX4-201ENST00000269397 RTL8CO15255 209 aa16.26■□□□□ 0.19
CBX4-201ENST00000269397 ZNF861PO60384 105 aa16.25■□□□□ 0.19
CBX4-201ENST00000269397 NUPR2A6NF83 97 aa16.22■□□□□ 0.19
CBX4-201ENST00000269397 ATP11AUNQ6ZP68 121 aa16.22■□□□□ 0.19
CBX4-201ENST00000269397 PLAC8Q9NZF1 115 aa16.22■□□□□ 0.19
CBX4-201ENST00000269397 TGP01266 2768 aa16.2■□□□□ 0.18
CBX4-201ENST00000269397 KMT2AQ03164 3969 aa16.2■□□□□ 0.18
CBX4-201ENST00000269397 SPINK7P58062 85 aa16.19■□□□□ 0.18
CBX4-201ENST00000269397 PRR26Q8N8Z3 221 aa16.19■□□□□ 0.18
CBX4-201ENST00000269397 CIRBP-AS1Q8TBR5 109 aa16.19■□□□□ 0.18
CBX4-201ENST00000269397 CDC42SE1Q9NRR8 79 aa16.19■□□□□ 0.18
CBX4-201ENST00000269397 FBN3Q75N90 2809 aa16.16■□□□□ 0.18
CBX4-201ENST00000269397 VPS13DQ5THJ4 4388 aa16.16■□□□□ 0.18
CBX4-201ENST00000269397 MEGF8Q7Z7M0 2845 aa16.13■□□□□ 0.17
CBX4-201ENST00000269397 DNAH17Q9UFH2 4485 aa16.13■□□□□ 0.17
CBX4-201ENST00000269397 KTN1-AS1Q86SY8 53 aa16.12■□□□□ 0.17
CBX4-201ENST00000269397 DNAH2Q9P225 4427 aa16.11■□□□□ 0.17
CBX4-201ENST00000269397 A6NN06 94 aa16.09■□□□□ 0.17
CBX4-201ENST00000269397 KRTAP13-3Q3SY46 172 aa16.09■□□□□ 0.17
CBX4-201ENST00000269397 RETNLBQ9BQ08 111 aa16.05■□□□□ 0.16
CBX4-201ENST00000269397 IGLV7-43P04211 117 aa16.02■□□□□ 0.16
CBX4-201ENST00000269397 PRKDCP78527 4128 aaKnown RBP15.98■□□□□ 0.15
CBX4-201ENST00000269397 ACYP2P14621 99 aa15.94■□□□□ 0.14
CBX4-201ENST00000269397 ALMS1Q8TCU4 4167 aa15.92■□□□□ 0.14
CBX4-201ENST00000269397 DNAH6Q9C0G6 4158 aa15.91■□□□□ 0.14
CBX4-201ENST00000269397 RBM12B-AS1Q9P1G2 102 aa15.91■□□□□ 0.14
CBX4-201ENST00000269397 LINC00313P59037 77 aa15.87■□□□□ 0.13
CBX4-201ENST00000269397 C8orf87E5RJ46 101 aa15.85■□□□□ 0.13
CBX4-201ENST00000269397 SSBP3-AS1Q7Z2R9 100 aa15.83■□□□□ 0.12
CBX4-201ENST00000269397 C1orf134Q5TEV5 83 aa15.82■□□□□ 0.12
CBX4-201ENST00000269397 DMAC1Q96GE9 116 aa15.82■□□□□ 0.12
CBX4-201ENST00000269397 C7orf65Q6ZTY9 151 aa15.8■□□□□ 0.12
CBX4-201ENST00000269397 DNAH11Q96DT5 4516 aa15.79■□□□□ 0.12
CBX4-201ENST00000269397 FAM229AH3BQW9 127 aa15.77■□□□□ 0.11
CBX4-201ENST00000269397 KRTAP13-2Q52LG2 175 aa15.74■□□□□ 0.11
CBX4-201ENST00000269397 IGKV2-30P06310 120 aa15.72■□□□□ 0.11
CBX4-201ENST00000269397 KRTAP10-2P60368 255 aa15.71■□□□□ 0.11
CBX4-201ENST00000269397 A0A1B0GU69 56 aa15.7■□□□□ 0.1
CBX4-201ENST00000269397 LY6G6CO95867 125 aa15.7■□□□□ 0.1
CBX4-201ENST00000269397 DNAH5Q8TE73 4624 aa15.67■□□□□ 0.1
CBX4-201ENST00000269397 IGKV2D-30A0A075B6S6 120 aa15.65■□□□□ 0.1
CBX4-201ENST00000269397 KRTAP16-1A8MUX0 517 aa15.62■□□□□ 0.09
CBX4-201ENST00000269397 DNHD1Q96M86 4753 aa15.6■□□□□ 0.09
CBX4-201ENST00000269397 LRP1BQ9NZR2 4599 aa15.6■□□□□ 0.09
CBX4-201ENST00000269397 PRAC1Q96KF2 57 aa15.57■□□□□ 0.08
CBX4-201ENST00000269397 ADM2Q7Z4H4 148 aa15.53■□□□□ 0.08
CBX4-201ENST00000269397 KRTAP10-1P60331 282 aa15.48■□□□□ 0.07
CBX4-201ENST00000269397 SPATA8Q6RVD6 105 aa15.46■□□□□ 0.07
CBX4-201ENST00000269397 KRTAP1-4P0C5Y4 121 aa15.45■□□□□ 0.06
CBX4-201ENST00000269397 MIR22HGQ0VDD5 57 aa15.44■□□□□ 0.06
CBX4-201ENST00000269397 VPS13BQ7Z7G8 4022 aa15.41■□□□□ 0.06
CBX4-201ENST00000269397 UQCR11O14957 56 aa15.4■□□□□ 0.06
CBX4-201ENST00000269397 SPINK1P00995 79 aa15.4■□□□□ 0.06
CBX4-201ENST00000269397 PKD1P98161 4303 aa15.37■□□□□ 0.05
CBX4-201ENST00000269397 Q6ZSA8 131 aa15.35■□□□□ 0.05
CBX4-201ENST00000269397 Q8N1X5 172 aa15.34■□□□□ 0.05
CBX4-201ENST00000269397 PLA2G1BP04054 148 aaKnown RBP15.33■□□□□ 0.05
CBX4-201ENST00000269397 C4orf48Q5BLP8 95 aa15.33■□□□□ 0.05
CBX4-201ENST00000269397 TYMSOSQ8TAI1 123 aa15.3■□□□□ 0.04
CBX4-201ENST00000269397 HYDINQ4G0P3 5121 aa15.29■□□□□ 0.04
CBX4-201ENST00000269397 FAT2Q9NYQ8 4349 aa15.24■□□□□ 0.03
CBX4-201ENST00000269397 LINC00304Q8N9R0 145 aa15.04■□□□□ -0
CBX4-201ENST00000269397 C9orf92A6NGG3 77 aa15.02■□□□□ -0
CBX4-201ENST00000269397 PKHD1P08F94 4074 aa15.02■□□□□ -0
CBX4-201ENST00000269397 LINC01554Q52M75 96 aa15.01□□□□□ -0.01
CBX4-201ENST00000269397 CSAG1Q6PB30 78 aa15□□□□□ -0.01
CBX4-201ENST00000269397 H0YAA0 97 aa14.9□□□□□ -0.02
CBX4-201ENST00000269397 SMR3BP02814 79 aaPredicted RBP14.9□□□□□ -0.02
CBX4-201ENST00000269397 KRTAP3-1Q9BYR8 98 aa14.87□□□□□ -0.03
CBX4-201ENST00000269397 RPS29P62273 56 aaKnown RBP14.79□□□□□ -0.04
CBX4-201ENST00000269397 A8MUU9 505 aa14.77□□□□□ -0.05
CBX4-201ENST00000269397 C20orf166-AS1Q96NR2 134 aa14.76□□□□□ -0.05
CBX4-201ENST00000269397 A0A1B0GU33 70 aa14.75□□□□□ -0.05
CBX4-201ENST00000269397 FAT1Q14517 4588 aa14.73□□□□□ -0.05
CBX4-201ENST00000269397 SACSQ9NZJ4 4579 aa14.7□□□□□ -0.06
CBX4-201ENST00000269397 H1FX-AS1Q4G0G2 97 aa14.65□□□□□ -0.06
CBX4-201ENST00000269397 FLG2Q5D862 2391 aaPredicted RBP14.64□□□□□ -0.07
CBX4-201ENST00000269397 DYNC1H1Q14204 4646 aaKnown RBP14.64□□□□□ -0.07
CBX4-201ENST00000269397 PKHD1L1Q86WI1 4243 aa14.54□□□□□ -0.08
CBX4-201ENST00000269397 APOBP04114 4563 aaKnown RBP14.48□□□□□ -0.09
CBX4-201ENST00000269397 KRTAP10-4P60372 401 aaPredicted RBP14.46□□□□□ -0.09
CBX4-201ENST00000269397 KRTAP25-1Q3LHN0 102 aa14.46□□□□□ -0.1
CBX4-201ENST00000269397 COX6B2Q6YFQ2 88 aa14.46□□□□□ -0.1
CBX4-201ENST00000269397 CRIPTQ9P021 101 aa14.46□□□□□ -0.1
CBX4-201ENST00000269397 DMBT1Q9UGM3 2413 aaPredicted RBP14.38□□□□□ -0.11
CBX4-201ENST00000269397 K7ERS5 55 aa14.28□□□□□ -0.12
CBX4-201ENST00000269397 A0A1B0GVY2 172 aa14.26□□□□□ -0.13
CBX4-201ENST00000269397 LRP1Q07954 4544 aaKnown RBP14.23□□□□□ -0.13
CBX4-201ENST00000269397 H3BS24 57 aa14.18□□□□□ -0.14
CBX4-201ENST00000269397 KRTAP3-3Q9BYR6 98 aa14.18□□□□□ -0.14
CBX4-201ENST00000269397 A0A0D9SG42 100 aa14.18□□□□□ -0.14
CBX4-201ENST00000269397 KRTAP10-6P60371 365 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms