RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 SVIPQ8NHG7 77 aa9.61□□□□□ -0.87
CCDC40-201ENST00000269318 FAT1Q14517 4588 aa9.58□□□□□ -0.88
CCDC40-201ENST00000269318 ZCCHC13Q8WW36 166 aaKnown RBP9.58□□□□□ -0.88
CCDC40-201ENST00000269318 NOTCH2NLQ7Z3S9 236 aa9.57□□□□□ -0.88
CCDC40-201ENST00000269318 TYMSOSQ8TAI1 123 aa9.57□□□□□ -0.88
CCDC40-201ENST00000269318 C1orf195Q5TG92 126 aa9.55□□□□□ -0.88
CCDC40-201ENST00000269318 FAM236DA0A1B0GTK5 79 aa9.54□□□□□ -0.88
CCDC40-201ENST00000269318 FAM236CP0DP71 79 aa9.54□□□□□ -0.88
CCDC40-201ENST00000269318 PRR26Q8N8Z3 221 aa9.53□□□□□ -0.88
CCDC40-201ENST00000269318 LIMD2Q9BT23 127 aa9.53□□□□□ -0.88
CCDC40-201ENST00000269318 MRPL34Q9BQ48 92 aaKnown RBP9.52□□□□□ -0.89
CCDC40-201ENST00000269318 MP68P56378 58 aa9.51□□□□□ -0.89
CCDC40-201ENST00000269318 SPINK1P00995 79 aa9.5□□□□□ -0.89
CCDC40-201ENST00000269318 C4orf48Q5BLP8 95 aa9.5□□□□□ -0.89
CCDC40-201ENST00000269318 H0Y9P7 68 aa9.5□□□□□ -0.89
CCDC40-201ENST00000269318 TP53AIP1Q9HCN2 124 aa9.5□□□□□ -0.89
CCDC40-201ENST00000269318 RPS28P62857 69 aaKnown RBP9.49□□□□□ -0.89
CCDC40-201ENST00000269318 C8orf87E5RJ46 101 aa9.48□□□□□ -0.89
CCDC40-201ENST00000269318 H3BPC8 53 aa9.47□□□□□ -0.89
CCDC40-201ENST00000269318 TRAV22A0A0B4J277 110 aa9.46□□□□□ -0.89
CCDC40-201ENST00000269318 LINC00304Q8N9R0 145 aa9.46□□□□□ -0.89
CCDC40-201ENST00000269318 LINC00208Q96KT6 92 aa9.46□□□□□ -0.89
CCDC40-201ENST00000269318 ATP5EP56381 51 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-201ENST00000269318 RPS29P62273 56 aaKnown RBP9.44□□□□□ -0.9
CCDC40-201ENST00000269318 BIRC6Q9NR09 4857 aa9.43□□□□□ -0.9
CCDC40-201ENST00000269318 PKHD1L1Q86WI1 4243 aa9.43□□□□□ -0.9
CCDC40-201ENST00000269318 NDUFS5O43920 106 aa9.43□□□□□ -0.9
CCDC40-201ENST00000269318 SPAG11AQ6PDA7 123 aa9.43□□□□□ -0.9
CCDC40-201ENST00000269318 OXTP01178 125 aa9.42□□□□□ -0.9
CCDC40-201ENST00000269318 LINC00313P59037 77 aa9.42□□□□□ -0.9
CCDC40-201ENST00000269318 C1orf64Q8NEQ6 169 aa9.41□□□□□ -0.9
CCDC40-201ENST00000269318 HSPG2P98160 4391 aa9.4□□□□□ -0.91
CCDC40-201ENST00000269318 SERP1Q9Y6X1 66 aa9.39□□□□□ -0.91
CCDC40-201ENST00000269318 FAM229AH3BQW9 127 aa9.38□□□□□ -0.91
CCDC40-201ENST00000269318 KRTAP16-1A8MUX0 517 aa9.37□□□□□ -0.91
CCDC40-201ENST00000269318 Q8N9P0 234 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-201ENST00000269318 EPPK1P58107 5090 aaKnown RBP9.35□□□□□ -0.91
CCDC40-201ENST00000269318 KRTAP13-3Q3SY46 172 aa9.35□□□□□ -0.91
CCDC40-201ENST00000269318 Q5VSD8 79 aa9.33□□□□□ -0.92
CCDC40-201ENST00000269318 Q5W150 140 aa9.33□□□□□ -0.92
CCDC40-201ENST00000269318 RYR1P21817 5038 aa9.33□□□□□ -0.92
CCDC40-201ENST00000269318 CYP4F30PQ9H0H9 118 aa9.3□□□□□ -0.92
CCDC40-201ENST00000269318 SPANXA2-OT1Q8N9U9 137 aa9.29□□□□□ -0.92
CCDC40-201ENST00000269318 KRTAP17-1Q9BYP8 105 aa9.28□□□□□ -0.92
CCDC40-201ENST00000269318 PRR4Q16378 134 aa9.26□□□□□ -0.93
CCDC40-201ENST00000269318 LOC101927531A0A1B0GV80 90 aa9.24□□□□□ -0.93
CCDC40-201ENST00000269318 PCOTHQ58A44 107 aa9.24□□□□□ -0.93
CCDC40-201ENST00000269318 KRTAP10-8P60410 259 aa9.23□□□□□ -0.93
CCDC40-201ENST00000269318 TNXBP22105 4242 aa9.23□□□□□ -0.93
CCDC40-201ENST00000269318 LRP1Q07954 4544 aaKnown RBP9.22□□□□□ -0.93
CCDC40-201ENST00000269318 IGLV7-46A0A075B6I9 117 aa9.21□□□□□ -0.94
CCDC40-201ENST00000269318 Q8N1X5 172 aa9.21□□□□□ -0.94
CCDC40-201ENST00000269318 KIAA1109Q2LD37 5005 aa9.21□□□□□ -0.94
CCDC40-201ENST00000269318 RETNLBQ9BQ08 111 aa9.18□□□□□ -0.94
CCDC40-201ENST00000269318 SMIM26A0A096LP01 95 aa9.17□□□□□ -0.94
CCDC40-201ENST00000269318 FLG2Q5D862 2391 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-201ENST00000269318 FAT3Q8TDW7 4589 aa9.15□□□□□ -0.94
CCDC40-201ENST00000269318 FP248Q71RG6 208 aaPredicted RBP9.15□□□□□ -0.95
CCDC40-201ENST00000269318 IGKV2-30P06310 120 aa9.13□□□□□ -0.95
CCDC40-201ENST00000269318 C9orf92A6NGG3 77 aa9.11□□□□□ -0.95
CCDC40-201ENST00000269318 C20orf166-AS1Q96NR2 134 aa9.09□□□□□ -0.95
CCDC40-201ENST00000269318 A8MUU9 505 aa9.08□□□□□ -0.96
CCDC40-201ENST00000269318 MT1HL1P0DM35 61 aa9.05□□□□□ -0.96
CCDC40-201ENST00000269318 HRES1P13985 223 aa9.05□□□□□ -0.96
CCDC40-201ENST00000269318 C4orf26Q17RF5 130 aa9.04□□□□□ -0.96
CCDC40-201ENST00000269318 COA5Q86WW8 74 aa9.03□□□□□ -0.96
CCDC40-201ENST00000269318 MYCBP2O75592 4640 aa9.03□□□□□ -0.96
CCDC40-201ENST00000269318 HERC2O95714 4834 aa9.03□□□□□ -0.96
CCDC40-201ENST00000269318 IGKV2D-30A0A075B6S6 120 aa9.02□□□□□ -0.97
CCDC40-201ENST00000269318 MPLKIPQ8TAP9 179 aa8.99□□□□□ -0.97
CCDC40-201ENST00000269318 DMAC1Q96GE9 116 aa8.97□□□□□ -0.97
CCDC40-201ENST00000269318 Q1T7F1 81 aa8.95□□□□□ -0.98
CCDC40-201ENST00000269318 C7orf65Q6ZTY9 151 aa8.95□□□□□ -0.98
CCDC40-201ENST00000269318 Q75L30 129 aa8.95□□□□□ -0.98
CCDC40-201ENST00000269318 DMBT1Q9UGM3 2413 aaPredicted RBP8.94□□□□□ -0.98
CCDC40-201ENST00000269318 PCLOQ9Y6V0 5065 aa8.93□□□□□ -0.98
CCDC40-201ENST00000269318 KRTAP4-5Q9BYR2 181 aa8.92□□□□□ -0.98
CCDC40-201ENST00000269318 ACYP2P14621 99 aa8.92□□□□□ -0.98
CCDC40-201ENST00000269318 V9GYY9 64 aa8.85□□□□□ -0.99
CCDC40-201ENST00000269318 XP32Q5T750 250 aa8.83□□□□□ -1
CCDC40-201ENST00000269318 SPINK7P58062 85 aa8.82□□□□□ -1
CCDC40-201ENST00000269318 RPL37P61927 97 aaKnown RBP8.82□□□□□ -1
CCDC40-201ENST00000269318 PSPHP1O15172 72 aa8.79□□□□□ -1
CCDC40-201ENST00000269318 ATP11AUNQ6ZP68 121 aa8.78□□□□□ -1
CCDC40-201ENST00000269318 CHKB-CPT1BH3BT56 60 aa8.77□□□□□ -1.01
CCDC40-201ENST00000269318 A8MUN3 132 aa8.76□□□□□ -1.01
CCDC40-201ENST00000269318 LINC01558Q9Y6Z2 57 aa8.75□□□□□ -1.01
CCDC40-201ENST00000269318 ABCA13Q86UQ4 5058 aa8.73□□□□□ -1.01
CCDC40-201ENST00000269318 Q5VV11 94 aa8.72□□□□□ -1.01
CCDC40-201ENST00000269318 KRTAP3-1Q9BYR8 98 aa8.72□□□□□ -1.01
CCDC40-201ENST00000269318 TPRXLQ17RH7 258 aa8.71□□□□□ -1.02
CCDC40-201ENST00000269318 PRR15LQ9BU68 103 aa8.71□□□□□ -1.02
CCDC40-201ENST00000269318 COX6B2Q6YFQ2 88 aa8.63□□□□□ -1.03
CCDC40-201ENST00000269318 BRK1Q8WUW1 75 aa8.61□□□□□ -1.03
CCDC40-201ENST00000269318 LRP2P98164 4655 aa8.58□□□□□ -1.04
CCDC40-201ENST00000269318 J3QL48 77 aa8.57□□□□□ -1.04
CCDC40-201ENST00000269318 LPAP08519 4548 aa8.57□□□□□ -1.04
CCDC40-201ENST00000269318 PRO0628Q9UI54 55 aa8.55□□□□□ -1.04
CCDC40-201ENST00000269318 A0A1B0GU69 56 aa8.51□□□□□ -1.05
CCDC40-201ENST00000269318 SPTSSBQ8NFR3 76 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms